Experiment: apoplastic, grinding recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0343 and Psyr_0344 are separated by 352 nucleotides Psyr_0344 and Psyr_0345 overlap by 4 nucleotides
Psyr_0343: Psyr_0343 - hypothetical protein, at 365,313 to 366,428
_0343
Psyr_0344: Psyr_0344 - Secretion protein HlyD, at 366,781 to 367,899
_0344
Psyr_0345: Psyr_0345 - Secretion protein HlyD, at 367,896 to 368,981
_0345
Position (kb) 366
367
368 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 365.781 kb on + strand, within Psyr_0343 at 365.781 kb on + strand, within Psyr_0343 at 365.781 kb on + strand, within Psyr_0343 at 365.781 kb on + strand, within Psyr_0343 at 365.860 kb on + strand, within Psyr_0343 at 365.860 kb on + strand, within Psyr_0343 at 365.860 kb on + strand, within Psyr_0343 at 365.860 kb on + strand, within Psyr_0343 at 365.860 kb on + strand, within Psyr_0343 at 365.860 kb on + strand, within Psyr_0343 at 365.861 kb on - strand, within Psyr_0343 at 365.861 kb on - strand, within Psyr_0343 at 365.861 kb on - strand, within Psyr_0343 at 365.861 kb on - strand, within Psyr_0343 at 365.864 kb on + strand, within Psyr_0343 at 365.864 kb on + strand, within Psyr_0343 at 365.864 kb on + strand, within Psyr_0343 at 365.865 kb on - strand, within Psyr_0343 at 365.865 kb on - strand, within Psyr_0343 at 365.865 kb on - strand, within Psyr_0343 at 365.865 kb on - strand, within Psyr_0343 at 365.865 kb on - strand, within Psyr_0343 at 365.922 kb on - strand, within Psyr_0343 at 365.922 kb on - strand, within Psyr_0343 at 365.988 kb on - strand, within Psyr_0343 at 366.005 kb on - strand, within Psyr_0343 at 366.026 kb on - strand, within Psyr_0343 at 366.047 kb on + strand, within Psyr_0343 at 366.197 kb on + strand at 366.197 kb on + strand, within Psyr_0343 at 366.197 kb on + strand, within Psyr_0343 at 366.197 kb on + strand, within Psyr_0343 at 366.198 kb on - strand, within Psyr_0343 at 366.198 kb on - strand, within Psyr_0343 at 366.198 kb on - strand, within Psyr_0343 at 366.198 kb on - strand, within Psyr_0343 at 366.198 kb on - strand, within Psyr_0343 at 366.215 kb on + strand, within Psyr_0343 at 366.255 kb on + strand, within Psyr_0343 at 366.255 kb on + strand, within Psyr_0343 at 366.255 kb on + strand, within Psyr_0343 at 366.255 kb on + strand, within Psyr_0343 at 366.255 kb on + strand, within Psyr_0343 at 366.256 kb on - strand, within Psyr_0343 at 366.291 kb on - strand, within Psyr_0343 at 366.295 kb on + strand, within Psyr_0343 at 366.295 kb on + strand, within Psyr_0343 at 366.296 kb on - strand, within Psyr_0343 at 366.322 kb on + strand at 366.323 kb on - strand at 366.323 kb on - strand at 366.323 kb on - strand at 366.325 kb on + strand at 366.325 kb on + strand at 366.325 kb on + strand at 366.326 kb on - strand at 366.339 kb on - strand at 366.339 kb on - strand at 366.341 kb on + strand at 366.341 kb on + strand at 366.458 kb on + strand at 366.458 kb on + strand at 366.458 kb on + strand at 366.498 kb on + strand at 366.498 kb on + strand at 366.498 kb on + strand at 366.499 kb on - strand at 366.499 kb on - strand at 366.499 kb on - strand at 366.502 kb on + strand at 366.580 kb on + strand at 366.580 kb on + strand at 366.580 kb on + strand at 366.580 kb on + strand at 366.580 kb on + strand at 366.580 kb on + strand at 366.580 kb on + strand at 366.580 kb on + strand at 366.580 kb on + strand at 366.580 kb on + strand at 366.581 kb on - strand at 366.581 kb on - strand at 366.581 kb on - strand at 366.581 kb on - strand at 366.581 kb on - strand at 366.581 kb on - strand at 366.581 kb on - strand at 366.581 kb on - strand at 366.581 kb on - strand at 366.581 kb on - strand at 366.581 kb on - strand at 366.584 kb on + strand at 366.584 kb on + strand at 366.584 kb on + strand at 366.584 kb on + strand at 366.584 kb on + strand at 366.584 kb on + strand at 366.584 kb on + strand at 366.584 kb on + strand at 366.584 kb on + strand at 366.584 kb on + strand at 366.584 kb on + strand at 366.584 kb on + strand at 366.585 kb on - strand at 366.585 kb on - strand at 366.585 kb on - strand at 366.585 kb on - strand at 366.585 kb on - strand at 366.585 kb on - strand at 366.585 kb on - strand at 366.585 kb on - strand at 366.585 kb on - strand at 366.585 kb on - strand at 366.585 kb on - strand at 366.585 kb on - strand at 366.585 kb on - strand at 366.585 kb on - strand at 366.585 kb on - strand at 366.585 kb on - strand at 366.585 kb on - strand at 366.585 kb on - strand at 366.585 kb on - strand at 366.645 kb on + strand at 366.645 kb on + strand at 366.645 kb on + strand at 366.645 kb on + strand at 366.646 kb on - strand at 366.646 kb on - strand at 366.646 kb on - strand at 366.646 kb on - strand at 366.648 kb on - strand at 366.648 kb on - strand at 366.648 kb on - strand at 366.679 kb on + strand at 366.679 kb on + strand at 366.680 kb on - strand at 366.721 kb on - strand at 366.792 kb on + strand at 366.793 kb on - strand at 366.793 kb on - strand at 366.807 kb on + strand at 366.807 kb on + strand at 366.807 kb on + strand at 366.807 kb on + strand at 367.177 kb on + strand, within Psyr_0344 at 367.177 kb on + strand, within Psyr_0344 at 367.178 kb on - strand, within Psyr_0344 at 367.179 kb on + strand, within Psyr_0344 at 367.180 kb on - strand, within Psyr_0344 at 367.180 kb on - strand, within Psyr_0344 at 367.180 kb on - strand, within Psyr_0344 at 367.180 kb on - strand, within Psyr_0344 at 367.195 kb on + strand, within Psyr_0344 at 367.195 kb on + strand, within Psyr_0344 at 367.195 kb on + strand, within Psyr_0344 at 367.195 kb on + strand, within Psyr_0344 at 367.196 kb on - strand, within Psyr_0344 at 367.417 kb on + strand, within Psyr_0344 at 367.418 kb on - strand, within Psyr_0344 at 367.418 kb on - strand, within Psyr_0344 at 367.515 kb on - strand, within Psyr_0344 at 367.542 kb on + strand, within Psyr_0344 at 367.700 kb on + strand, within Psyr_0344 at 367.832 kb on + strand at 367.832 kb on + strand at 367.832 kb on + strand at 367.833 kb on - strand at 367.833 kb on - strand at 367.948 kb on + strand at 367.949 kb on - strand at 367.949 kb on - strand at 368.128 kb on + strand, within Psyr_0345 at 368.129 kb on - strand, within Psyr_0345 at 368.534 kb on + strand, within Psyr_0345 at 368.566 kb on + strand, within Psyr_0345 at 368.566 kb on + strand, within Psyr_0345 at 368.567 kb on - strand, within Psyr_0345 at 368.654 kb on + strand, within Psyr_0345 at 368.654 kb on + strand, within Psyr_0345 at 368.654 kb on + strand, within Psyr_0345 at 368.655 kb on - strand, within Psyr_0345 at 368.655 kb on - strand, within Psyr_0345 at 368.655 kb on - strand, within Psyr_0345 at 368.723 kb on - strand, within Psyr_0345 at 368.850 kb on - strand, within Psyr_0345
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, grinding recovery; Green bean remove 365,781 + Psyr_0343 0.42 +1.6 365,781 + Psyr_0343 0.42 -0.3 365,781 + Psyr_0343 0.42 -0.3 365,781 + Psyr_0343 0.42 +0.1 365,860 + Psyr_0343 0.49 -0.5 365,860 + Psyr_0343 0.49 +1.4 365,860 + Psyr_0343 0.49 +0.4 365,860 + Psyr_0343 0.49 -1.4 365,860 + Psyr_0343 0.49 -3.7 365,860 + Psyr_0343 0.49 -1.2 365,861 - Psyr_0343 0.49 -3.3 365,861 - Psyr_0343 0.49 -0.6 365,861 - Psyr_0343 0.49 -3.0 365,861 - Psyr_0343 0.49 +0.7 365,864 + Psyr_0343 0.49 +1.2 365,864 + Psyr_0343 0.49 +1.7 365,864 + Psyr_0343 0.49 +0.6 365,865 - Psyr_0343 0.49 -0.2 365,865 - Psyr_0343 0.49 -2.3 365,865 - Psyr_0343 0.49 +1.2 365,865 - Psyr_0343 0.49 -3.6 365,865 - Psyr_0343 0.49 -1.0 365,922 - Psyr_0343 0.55 +0.0 365,922 - Psyr_0343 0.55 +0.0 365,988 - Psyr_0343 0.60 +1.2 366,005 - Psyr_0343 0.62 +0.5 366,026 - Psyr_0343 0.64 +2.0 366,047 + Psyr_0343 0.66 +3.2 366,197 + +0.7 366,197 + Psyr_0343 0.79 -2.2 366,197 + Psyr_0343 0.79 +1.3 366,197 + Psyr_0343 0.79 +1.2 366,198 - Psyr_0343 0.79 -2.1 366,198 - Psyr_0343 0.79 +1.5 366,198 - Psyr_0343 0.79 -0.6 366,198 - Psyr_0343 0.79 -1.6 366,198 - Psyr_0343 0.79 +0.5 366,215 + Psyr_0343 0.81 +0.3 366,255 + Psyr_0343 0.84 +0.6 366,255 + Psyr_0343 0.84 +1.9 366,255 + Psyr_0343 0.84 +0.9 366,255 + Psyr_0343 0.84 +0.1 366,255 + Psyr_0343 0.84 +1.6 366,256 - Psyr_0343 0.84 +0.9 366,291 - Psyr_0343 0.88 +1.3 366,295 + Psyr_0343 0.88 +0.7 366,295 + Psyr_0343 0.88 -0.3 366,296 - Psyr_0343 0.88 -1.3 366,322 + +2.3 366,323 - -2.6 366,323 - +1.0 366,323 - +1.3 366,325 + +0.2 366,325 + -2.5 366,325 + +1.9 366,326 - -0.9 366,339 - +0.2 366,339 - +0.6 366,341 + -1.4 366,341 + -0.4 366,458 + -0.4 366,458 + -1.3 366,458 + -2.1 366,498 + -2.6 366,498 + -1.7 366,498 + -2.1 366,499 - +0.3 366,499 - +0.7 366,499 - -2.3 366,502 + +0.4 366,580 + +1.2 366,580 + +0.6 366,580 + -1.6 366,580 + +2.3 366,580 + -2.3 366,580 + -0.3 366,580 + -1.6 366,580 + +2.7 366,580 + -1.2 366,580 + -2.6 366,581 - +1.1 366,581 - +0.7 366,581 - -1.1 366,581 - -0.3 366,581 - +0.8 366,581 - +0.4 366,581 - +0.9 366,581 - -1.1 366,581 - +0.7 366,581 - +0.9 366,581 - -0.2 366,584 + +0.4 366,584 + -0.2 366,584 + +0.9 366,584 + +2.0 366,584 + -3.3 366,584 + +1.0 366,584 + -0.3 366,584 + -2.8 366,584 + -1.9 366,584 + +0.5 366,584 + +3.7 366,584 + +1.1 366,585 - +0.8 366,585 - +0.6 366,585 - -2.4 366,585 - +1.6 366,585 - -2.3 366,585 - -1.8 366,585 - -1.3 366,585 - -0.1 366,585 - +0.5 366,585 - -1.4 366,585 - -0.6 366,585 - +0.9 366,585 - -1.1 366,585 - +1.5 366,585 - +0.8 366,585 - +0.4 366,585 - +0.4 366,585 - +2.5 366,585 - -0.3 366,645 + -3.2 366,645 + -1.6 366,645 + +1.8 366,645 + +0.2 366,646 - -2.9 366,646 - -0.9 366,646 - -2.3 366,646 - +0.2 366,648 - -3.3 366,648 - +0.9 366,648 - -1.4 366,679 + +1.8 366,679 + -0.8 366,680 - +1.9 366,721 - -2.0 366,792 + +0.7 366,793 - -0.2 366,793 - -0.6 366,807 + -0.0 366,807 + -0.1 366,807 + -3.0 366,807 + -1.6 367,177 + Psyr_0344 0.35 +1.1 367,177 + Psyr_0344 0.35 -1.5 367,178 - Psyr_0344 0.35 -1.8 367,179 + Psyr_0344 0.36 +0.8 367,180 - Psyr_0344 0.36 +1.3 367,180 - Psyr_0344 0.36 +0.3 367,180 - Psyr_0344 0.36 -1.9 367,180 - Psyr_0344 0.36 -1.6 367,195 + Psyr_0344 0.37 -1.8 367,195 + Psyr_0344 0.37 +1.1 367,195 + Psyr_0344 0.37 +0.9 367,195 + Psyr_0344 0.37 +0.5 367,196 - Psyr_0344 0.37 +0.5 367,417 + Psyr_0344 0.57 +0.6 367,418 - Psyr_0344 0.57 -0.8 367,418 - Psyr_0344 0.57 -2.4 367,515 - Psyr_0344 0.66 +0.2 367,542 + Psyr_0344 0.68 +2.1 367,700 + Psyr_0344 0.82 +1.6 367,832 + +0.6 367,832 + -2.4 367,832 + +1.6 367,833 - +1.7 367,833 - -2.2 367,948 + +0.0 367,949 - -2.8 367,949 - -1.8 368,128 + Psyr_0345 0.21 -0.4 368,129 - Psyr_0345 0.21 -2.5 368,534 + Psyr_0345 0.59 +1.7 368,566 + Psyr_0345 0.62 -1.3 368,566 + Psyr_0345 0.62 +0.6 368,567 - Psyr_0345 0.62 -2.8 368,654 + Psyr_0345 0.70 +0.8 368,654 + Psyr_0345 0.70 +2.5 368,654 + Psyr_0345 0.70 -1.7 368,655 - Psyr_0345 0.70 -1.0 368,655 - Psyr_0345 0.70 +0.8 368,655 - Psyr_0345 0.70 +0.4 368,723 - Psyr_0345 0.76 -0.6 368,850 - Psyr_0345 0.88 +1.0
Or see this region's nucleotide sequence