Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0092

Experiment: apoplastic, grinding recovery; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0091 and Psyr_0092 are separated by 286 nucleotidesPsyr_0092 and Psyr_0093 are separated by 45 nucleotides Psyr_0091: Psyr_0091 - succinate semialdehyde dehydrogenase, at 99,948 to 101,390 _0091 Psyr_0092: Psyr_0092 - Lysine exporter protein (LYSE/YGGA), at 101,677 to 102,312 _0092 Psyr_0093: Psyr_0093 - Flavoprotein monooxygenase, at 102,358 to 103,761 _0093 Position (kb) 101 102 103Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 101.059 kb on + strand, within Psyr_0091at 101.059 kb on + strand, within Psyr_0091at 101.059 kb on + strand, within Psyr_0091at 101.059 kb on + strand, within Psyr_0091at 101.060 kb on - strand, within Psyr_0091at 101.060 kb on - strand, within Psyr_0091at 101.060 kb on - strand, within Psyr_0091at 101.060 kb on - strand, within Psyr_0091at 101.060 kb on - strand, within Psyr_0091at 101.060 kb on - strand, within Psyr_0091at 101.060 kb on - strand, within Psyr_0091at 101.060 kb on - strand, within Psyr_0091at 101.060 kb on - strand, within Psyr_0091at 101.060 kb on - strand, within Psyr_0091at 101.060 kb on - strand, within Psyr_0091at 101.060 kb on - strand, within Psyr_0091at 101.060 kb on - strand, within Psyr_0091at 101.060 kb on - strand, within Psyr_0091at 101.350 kb on + strandat 101.350 kb on + strandat 101.350 kb on + strandat 101.350 kb on + strandat 101.350 kb on + strandat 101.350 kb on + strandat 101.350 kb on + strandat 101.350 kb on + strandat 101.350 kb on + strandat 101.350 kb on + strandat 101.351 kb on - strandat 101.351 kb on - strandat 101.351 kb on - strandat 101.351 kb on - strandat 101.351 kb on - strandat 101.402 kb on - strandat 101.402 kb on - strandat 101.402 kb on - strandat 101.436 kb on + strandat 101.557 kb on - strandat 101.810 kb on + strand, within Psyr_0092at 101.810 kb on + strand, within Psyr_0092at 101.810 kb on + strand, within Psyr_0092at 101.810 kb on + strand, within Psyr_0092at 101.810 kb on + strand, within Psyr_0092at 101.810 kb on + strand, within Psyr_0092at 101.811 kb on - strand, within Psyr_0092at 101.811 kb on - strand, within Psyr_0092at 101.811 kb on - strand, within Psyr_0092at 101.811 kb on - strand, within Psyr_0092at 101.811 kb on - strand, within Psyr_0092at 101.811 kb on - strand, within Psyr_0092at 101.958 kb on + strand, within Psyr_0092at 101.959 kb on - strand, within Psyr_0092at 101.959 kb on - strand, within Psyr_0092at 101.959 kb on - strand, within Psyr_0092at 101.959 kb on - strand, within Psyr_0092at 102.301 kb on + strandat 102.302 kb on - strandat 102.302 kb on - strandat 102.554 kb on + strand, within Psyr_0093at 102.554 kb on + strand, within Psyr_0093at 102.554 kb on + strand, within Psyr_0093at 102.554 kb on + strand, within Psyr_0093at 102.554 kb on + strand, within Psyr_0093at 102.554 kb on + strand, within Psyr_0093at 102.554 kb on + strand, within Psyr_0093at 102.554 kb on + strand, within Psyr_0093at 102.554 kb on + strand, within Psyr_0093at 102.554 kb on + strand, within Psyr_0093at 102.554 kb on + strand, within Psyr_0093at 102.554 kb on + strand, within Psyr_0093at 102.554 kb on + strand, within Psyr_0093at 102.555 kb on - strand, within Psyr_0093at 102.555 kb on - strand, within Psyr_0093at 102.555 kb on - strand, within Psyr_0093at 102.555 kb on - strand, within Psyr_0093at 102.555 kb on - strand, within Psyr_0093at 102.555 kb on - strand, within Psyr_0093at 102.555 kb on - strand, within Psyr_0093at 102.555 kb on - strand, within Psyr_0093at 102.555 kb on - strand, within Psyr_0093at 102.555 kb on - strand, within Psyr_0093at 102.555 kb on - strand, within Psyr_0093at 102.585 kb on + strand, within Psyr_0093at 102.618 kb on - strand, within Psyr_0093at 102.618 kb on - strand, within Psyr_0093at 102.618 kb on - strand, within Psyr_0093at 102.618 kb on - strand, within Psyr_0093at 102.618 kb on - strand, within Psyr_0093at 102.618 kb on - strand, within Psyr_0093at 102.882 kb on + strand, within Psyr_0093at 102.883 kb on - strand, within Psyr_0093at 102.883 kb on - strand, within Psyr_0093at 102.948 kb on + strand, within Psyr_0093at 102.948 kb on + strand, within Psyr_0093at 102.949 kb on - strand, within Psyr_0093at 102.949 kb on - strand, within Psyr_0093at 102.950 kb on + strand, within Psyr_0093at 102.950 kb on + strand, within Psyr_0093at 102.950 kb on + strand, within Psyr_0093at 102.950 kb on + strand, within Psyr_0093at 102.950 kb on + strand, within Psyr_0093at 102.950 kb on + strand, within Psyr_0093at 102.950 kb on + strand, within Psyr_0093at 102.951 kb on - strand, within Psyr_0093at 102.951 kb on - strand, within Psyr_0093at 102.951 kb on - strand, within Psyr_0093at 102.951 kb on - strand, within Psyr_0093at 102.951 kb on - strand, within Psyr_0093at 102.951 kb on - strand, within Psyr_0093at 102.951 kb on - strand, within Psyr_0093at 103.182 kb on - strand, within Psyr_0093at 103.182 kb on - strand, within Psyr_0093at 103.208 kb on + strand, within Psyr_0093at 103.208 kb on + strand, within Psyr_0093at 103.208 kb on + strand, within Psyr_0093at 103.209 kb on - strand, within Psyr_0093at 103.209 kb on - strand, within Psyr_0093at 103.209 kb on - strand, within Psyr_0093at 103.209 kb on - strand, within Psyr_0093at 103.209 kb on - strand, within Psyr_0093at 103.209 kb on - strand, within Psyr_0093at 103.209 kb on - strand, within Psyr_0093at 103.209 kb on - strand, within Psyr_0093

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic, grinding recovery; Green bean
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101,059 + Psyr_0091 0.77 -1.8
101,059 + Psyr_0091 0.77 -0.2
101,059 + Psyr_0091 0.77 +1.4
101,059 + Psyr_0091 0.77 +2.3
101,060 - Psyr_0091 0.77 -2.5
101,060 - Psyr_0091 0.77 +2.4
101,060 - Psyr_0091 0.77 +0.9
101,060 - Psyr_0091 0.77 -0.7
101,060 - Psyr_0091 0.77 -0.2
101,060 - Psyr_0091 0.77 +0.5
101,060 - Psyr_0091 0.77 -0.3
101,060 - Psyr_0091 0.77 +2.0
101,060 - Psyr_0091 0.77 +1.5
101,060 - Psyr_0091 0.77 -2.6
101,060 - Psyr_0091 0.77 +2.2
101,060 - Psyr_0091 0.77 +0.6
101,060 - Psyr_0091 0.77 -3.3
101,060 - Psyr_0091 0.77 -1.4
101,350 + -1.0
101,350 + -2.8
101,350 + +2.5
101,350 + +0.7
101,350 + -2.9
101,350 + -1.0
101,350 + +2.2
101,350 + -1.6
101,350 + -0.6
101,350 + -0.6
101,351 - +1.4
101,351 - -1.6
101,351 - +0.4
101,351 - +0.2
101,351 - -3.1
101,402 - -0.8
101,402 - -0.5
101,402 - +1.2
101,436 + +1.5
101,557 - +2.6
101,810 + Psyr_0092 0.21 +1.4
101,810 + Psyr_0092 0.21 -0.1
101,810 + Psyr_0092 0.21 +1.4
101,810 + Psyr_0092 0.21 +0.5
101,810 + Psyr_0092 0.21 -1.3
101,810 + Psyr_0092 0.21 -0.3
101,811 - Psyr_0092 0.21 -1.5
101,811 - Psyr_0092 0.21 +3.3
101,811 - Psyr_0092 0.21 +0.4
101,811 - Psyr_0092 0.21 +1.8
101,811 - Psyr_0092 0.21 +1.2
101,811 - Psyr_0092 0.21 +1.4
101,958 + Psyr_0092 0.44 +1.1
101,959 - Psyr_0092 0.44 +3.1
101,959 - Psyr_0092 0.44 +1.4
101,959 - Psyr_0092 0.44 -3.2
101,959 - Psyr_0092 0.44 -1.0
102,301 + +0.8
102,302 - +2.2
102,302 - -2.4
102,554 + Psyr_0093 0.14 -0.7
102,554 + Psyr_0093 0.14 -0.8
102,554 + Psyr_0093 0.14 +0.5
102,554 + Psyr_0093 0.14 -3.2
102,554 + Psyr_0093 0.14 +0.9
102,554 + Psyr_0093 0.14 -0.2
102,554 + Psyr_0093 0.14 +1.6
102,554 + Psyr_0093 0.14 -1.8
102,554 + Psyr_0093 0.14 -0.7
102,554 + Psyr_0093 0.14 -1.6
102,554 + Psyr_0093 0.14 +1.9
102,554 + Psyr_0093 0.14 +0.2
102,554 + Psyr_0093 0.14 +3.3
102,555 - Psyr_0093 0.14 -0.6
102,555 - Psyr_0093 0.14 +0.4
102,555 - Psyr_0093 0.14 -0.1
102,555 - Psyr_0093 0.14 -2.6
102,555 - Psyr_0093 0.14 -0.6
102,555 - Psyr_0093 0.14 +0.6
102,555 - Psyr_0093 0.14 -3.1
102,555 - Psyr_0093 0.14 +0.3
102,555 - Psyr_0093 0.14 +0.4
102,555 - Psyr_0093 0.14 +1.4
102,555 - Psyr_0093 0.14 +0.6
102,585 + Psyr_0093 0.16 +1.3
102,618 - Psyr_0093 0.19 -0.7
102,618 - Psyr_0093 0.19 -2.4
102,618 - Psyr_0093 0.19 -1.0
102,618 - Psyr_0093 0.19 +2.9
102,618 - Psyr_0093 0.19 -0.2
102,618 - Psyr_0093 0.19 -0.3
102,882 + Psyr_0093 0.37 +1.0
102,883 - Psyr_0093 0.37 -3.2
102,883 - Psyr_0093 0.37 -0.6
102,948 + Psyr_0093 0.42 +0.4
102,948 + Psyr_0093 0.42 +0.8
102,949 - Psyr_0093 0.42 +0.2
102,949 - Psyr_0093 0.42 -0.7
102,950 + Psyr_0093 0.42 +2.0
102,950 + Psyr_0093 0.42 +0.9
102,950 + Psyr_0093 0.42 -2.5
102,950 + Psyr_0093 0.42 -2.0
102,950 + Psyr_0093 0.42 -1.9
102,950 + Psyr_0093 0.42 -1.9
102,950 + Psyr_0093 0.42 -2.7
102,951 - Psyr_0093 0.42 +0.5
102,951 - Psyr_0093 0.42 -0.8
102,951 - Psyr_0093 0.42 -0.7
102,951 - Psyr_0093 0.42 -1.9
102,951 - Psyr_0093 0.42 +1.6
102,951 - Psyr_0093 0.42 -3.3
102,951 - Psyr_0093 0.42 -1.7
103,182 - Psyr_0093 0.59 -2.6
103,182 - Psyr_0093 0.59 -0.4
103,208 + Psyr_0093 0.61 -0.8
103,208 + Psyr_0093 0.61 +0.2
103,208 + Psyr_0093 0.61 -0.7
103,209 - Psyr_0093 0.61 -2.9
103,209 - Psyr_0093 0.61 -3.7
103,209 - Psyr_0093 0.61 +0.9
103,209 - Psyr_0093 0.61 -0.6
103,209 - Psyr_0093 0.61 +3.4
103,209 - Psyr_0093 0.61 -1.1
103,209 - Psyr_0093 0.61 -3.1
103,209 - Psyr_0093 0.61 +0.5

Or see this region's nucleotide sequence