Experiment: apoplastic, grinding recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0090 and Psyr_0091 are separated by 179 nucleotides Psyr_0091 and Psyr_0092 are separated by 286 nucleotides Psyr_0092 and Psyr_0093 are separated by 45 nucleotides
Psyr_0090: Psyr_0090 - 4-aminobutyrate aminotransferase apoenzyme, at 98,488 to 99,768
_0090
Psyr_0091: Psyr_0091 - succinate semialdehyde dehydrogenase, at 99,948 to 101,390
_0091
Psyr_0092: Psyr_0092 - Lysine exporter protein (LYSE/YGGA), at 101,677 to 102,312
_0092
Psyr_0093: Psyr_0093 - Flavoprotein monooxygenase, at 102,358 to 103,761
_0093
Position (kb) 99
100
101
102 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 98.973 kb on + strand, within Psyr_0090 at 98.974 kb on - strand, within Psyr_0090 at 99.122 kb on + strand, within Psyr_0090 at 99.122 kb on + strand, within Psyr_0090 at 99.122 kb on + strand, within Psyr_0090 at 99.122 kb on + strand, within Psyr_0090 at 99.122 kb on + strand, within Psyr_0090 at 99.122 kb on + strand, within Psyr_0090 at 99.122 kb on + strand, within Psyr_0090 at 99.122 kb on + strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.271 kb on - strand, within Psyr_0090 at 99.354 kb on - strand, within Psyr_0090 at 99.509 kb on + strand, within Psyr_0090 at 99.509 kb on + strand, within Psyr_0090 at 99.510 kb on - strand, within Psyr_0090 at 99.510 kb on - strand, within Psyr_0090 at 99.510 kb on - strand, within Psyr_0090 at 99.510 kb on - strand, within Psyr_0090 at 99.510 kb on - strand, within Psyr_0090 at 99.510 kb on - strand, within Psyr_0090 at 99.510 kb on - strand, within Psyr_0090 at 99.519 kb on - strand, within Psyr_0090 at 99.519 kb on - strand, within Psyr_0090 at 99.519 kb on - strand, within Psyr_0090 at 99.770 kb on + strand at 99.770 kb on + strand at 99.770 kb on + strand at 99.770 kb on + strand at 99.770 kb on + strand at 99.770 kb on + strand at 99.770 kb on + strand at 99.770 kb on + strand at 99.770 kb on + strand at 99.770 kb on + strand at 99.770 kb on + strand at 99.770 kb on + strand at 99.770 kb on + strand at 99.770 kb on + strand at 99.770 kb on + strand at 99.770 kb on + strand at 99.770 kb on + strand at 99.770 kb on + strand at 99.770 kb on + strand at 99.770 kb on + strand at 99.771 kb on - strand at 99.771 kb on - strand at 99.771 kb on - strand at 99.771 kb on - strand at 99.771 kb on - strand at 99.771 kb on - strand at 99.771 kb on - strand at 99.771 kb on - strand at 99.771 kb on - strand at 99.771 kb on - strand at 99.771 kb on - strand at 99.771 kb on - strand at 99.771 kb on - strand at 99.771 kb on - strand at 99.771 kb on - strand at 99.771 kb on - strand at 99.840 kb on + strand at 99.840 kb on + strand at 99.840 kb on + strand at 99.840 kb on + strand at 99.841 kb on - strand at 99.841 kb on - strand at 99.841 kb on - strand at 99.841 kb on - strand at 99.841 kb on - strand at 99.967 kb on + strand at 99.967 kb on + strand at 99.968 kb on - strand at 99.968 kb on - strand at 99.968 kb on - strand at 99.968 kb on - strand at 99.968 kb on - strand at 99.968 kb on - strand at 99.983 kb on - strand at 99.997 kb on + strand at 99.997 kb on + strand at 99.997 kb on + strand at 100.094 kb on - strand, within Psyr_0091 at 100.141 kb on + strand, within Psyr_0091 at 100.147 kb on + strand, within Psyr_0091 at 100.147 kb on + strand, within Psyr_0091 at 100.148 kb on - strand, within Psyr_0091 at 100.266 kb on - strand, within Psyr_0091 at 100.486 kb on + strand, within Psyr_0091 at 100.486 kb on + strand, within Psyr_0091 at 100.487 kb on - strand, within Psyr_0091 at 100.487 kb on - strand, within Psyr_0091 at 100.487 kb on - strand, within Psyr_0091 at 100.504 kb on + strand, within Psyr_0091 at 100.504 kb on + strand, within Psyr_0091 at 100.504 kb on + strand, within Psyr_0091 at 100.504 kb on + strand, within Psyr_0091 at 100.505 kb on - strand, within Psyr_0091 at 100.505 kb on - strand, within Psyr_0091 at 100.505 kb on - strand, within Psyr_0091 at 100.505 kb on - strand, within Psyr_0091 at 100.505 kb on - strand, within Psyr_0091 at 100.505 kb on - strand, within Psyr_0091 at 100.505 kb on - strand, within Psyr_0091 at 100.505 kb on - strand, within Psyr_0091 at 100.505 kb on - strand, within Psyr_0091 at 100.547 kb on - strand, within Psyr_0091 at 101.059 kb on + strand, within Psyr_0091 at 101.059 kb on + strand, within Psyr_0091 at 101.059 kb on + strand, within Psyr_0091 at 101.059 kb on + strand, within Psyr_0091 at 101.060 kb on - strand, within Psyr_0091 at 101.060 kb on - strand, within Psyr_0091 at 101.060 kb on - strand, within Psyr_0091 at 101.060 kb on - strand, within Psyr_0091 at 101.060 kb on - strand, within Psyr_0091 at 101.060 kb on - strand, within Psyr_0091 at 101.060 kb on - strand, within Psyr_0091 at 101.060 kb on - strand, within Psyr_0091 at 101.060 kb on - strand, within Psyr_0091 at 101.060 kb on - strand, within Psyr_0091 at 101.060 kb on - strand, within Psyr_0091 at 101.060 kb on - strand, within Psyr_0091 at 101.060 kb on - strand, within Psyr_0091 at 101.060 kb on - strand, within Psyr_0091 at 101.350 kb on + strand at 101.350 kb on + strand at 101.350 kb on + strand at 101.350 kb on + strand at 101.350 kb on + strand at 101.350 kb on + strand at 101.350 kb on + strand at 101.350 kb on + strand at 101.350 kb on + strand at 101.350 kb on + strand at 101.351 kb on - strand at 101.351 kb on - strand at 101.351 kb on - strand at 101.351 kb on - strand at 101.351 kb on - strand at 101.402 kb on - strand at 101.402 kb on - strand at 101.402 kb on - strand at 101.436 kb on + strand at 101.557 kb on - strand at 101.810 kb on + strand, within Psyr_0092 at 101.810 kb on + strand, within Psyr_0092 at 101.810 kb on + strand, within Psyr_0092 at 101.810 kb on + strand, within Psyr_0092 at 101.810 kb on + strand, within Psyr_0092 at 101.810 kb on + strand, within Psyr_0092 at 101.811 kb on - strand, within Psyr_0092 at 101.811 kb on - strand, within Psyr_0092 at 101.811 kb on - strand, within Psyr_0092 at 101.811 kb on - strand, within Psyr_0092 at 101.811 kb on - strand, within Psyr_0092 at 101.811 kb on - strand, within Psyr_0092 at 101.958 kb on + strand, within Psyr_0092 at 101.959 kb on - strand, within Psyr_0092 at 101.959 kb on - strand, within Psyr_0092 at 101.959 kb on - strand, within Psyr_0092 at 101.959 kb on - strand, within Psyr_0092 at 102.301 kb on + strand at 102.302 kb on - strand at 102.302 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, grinding recovery; Green bean remove 98,973 + Psyr_0090 0.38 +1.4 98,974 - Psyr_0090 0.38 -2.9 99,122 + Psyr_0090 0.49 +1.6 99,122 + Psyr_0090 0.49 -1.9 99,122 + Psyr_0090 0.49 -1.5 99,122 + Psyr_0090 0.49 -1.5 99,122 + Psyr_0090 0.49 +0.8 99,122 + Psyr_0090 0.49 +0.8 99,122 + Psyr_0090 0.49 -0.2 99,122 + Psyr_0090 0.49 +0.7 99,123 - Psyr_0090 0.50 +1.5 99,123 - Psyr_0090 0.50 -2.3 99,123 - Psyr_0090 0.50 +0.1 99,123 - Psyr_0090 0.50 -0.1 99,123 - Psyr_0090 0.50 -1.2 99,123 - Psyr_0090 0.50 +1.6 99,123 - Psyr_0090 0.50 +0.2 99,123 - Psyr_0090 0.50 -0.6 99,123 - Psyr_0090 0.50 -0.5 99,123 - Psyr_0090 0.50 +0.7 99,123 - Psyr_0090 0.50 -2.2 99,123 - Psyr_0090 0.50 +1.2 99,123 - Psyr_0090 0.50 +0.1 99,123 - Psyr_0090 0.50 +1.6 99,271 - Psyr_0090 0.61 +1.1 99,354 - Psyr_0090 0.68 +1.3 99,509 + Psyr_0090 0.80 +0.6 99,509 + Psyr_0090 0.80 +1.6 99,510 - Psyr_0090 0.80 -2.4 99,510 - Psyr_0090 0.80 -1.7 99,510 - Psyr_0090 0.80 +1.7 99,510 - Psyr_0090 0.80 +1.3 99,510 - Psyr_0090 0.80 -0.7 99,510 - Psyr_0090 0.80 -3.9 99,510 - Psyr_0090 0.80 -0.5 99,519 - Psyr_0090 0.80 -0.2 99,519 - Psyr_0090 0.80 -0.2 99,519 - Psyr_0090 0.80 -1.0 99,770 + +1.1 99,770 + -1.7 99,770 + +0.2 99,770 + -0.4 99,770 + +0.4 99,770 + -0.3 99,770 + -1.2 99,770 + +0.1 99,770 + +0.1 99,770 + -4.1 99,770 + +1.9 99,770 + -0.1 99,770 + -0.3 99,770 + +1.9 99,770 + -1.7 99,770 + +0.5 99,770 + +0.4 99,770 + -1.8 99,770 + -1.1 99,770 + +1.9 99,771 - +0.5 99,771 - +1.5 99,771 - -0.0 99,771 - +1.3 99,771 - +0.8 99,771 - +0.6 99,771 - +1.5 99,771 - -0.3 99,771 - +0.1 99,771 - -1.7 99,771 - +0.1 99,771 - -0.4 99,771 - +0.8 99,771 - -0.5 99,771 - -2.4 99,771 - -0.2 99,840 + -0.6 99,840 + -0.2 99,840 + -0.3 99,840 + -2.2 99,841 - -0.8 99,841 - -1.6 99,841 - -1.2 99,841 - -0.4 99,841 - -0.1 99,967 + +0.1 99,967 + -2.6 99,968 - -0.0 99,968 - +1.3 99,968 - -0.8 99,968 - +2.5 99,968 - -1.1 99,968 - -2.4 99,983 - +0.4 99,997 + +1.6 99,997 + +0.7 99,997 + -1.0 100,094 - Psyr_0091 0.10 -0.3 100,141 + Psyr_0091 0.13 -0.1 100,147 + Psyr_0091 0.14 +1.7 100,147 + Psyr_0091 0.14 -0.1 100,148 - Psyr_0091 0.14 -2.3 100,266 - Psyr_0091 0.22 +1.8 100,486 + Psyr_0091 0.37 +0.9 100,486 + Psyr_0091 0.37 -1.0 100,487 - Psyr_0091 0.37 -3.9 100,487 - Psyr_0091 0.37 -0.2 100,487 - Psyr_0091 0.37 +0.8 100,504 + Psyr_0091 0.39 -3.4 100,504 + Psyr_0091 0.39 -0.5 100,504 + Psyr_0091 0.39 +0.9 100,504 + Psyr_0091 0.39 -0.7 100,505 - Psyr_0091 0.39 +0.8 100,505 - Psyr_0091 0.39 -0.7 100,505 - Psyr_0091 0.39 -1.0 100,505 - Psyr_0091 0.39 -1.2 100,505 - Psyr_0091 0.39 +0.9 100,505 - Psyr_0091 0.39 +1.4 100,505 - Psyr_0091 0.39 +0.3 100,505 - Psyr_0091 0.39 -2.8 100,505 - Psyr_0091 0.39 -0.8 100,547 - Psyr_0091 0.42 -0.1 101,059 + Psyr_0091 0.77 -1.8 101,059 + Psyr_0091 0.77 -0.2 101,059 + Psyr_0091 0.77 +1.4 101,059 + Psyr_0091 0.77 +2.3 101,060 - Psyr_0091 0.77 -2.5 101,060 - Psyr_0091 0.77 +2.4 101,060 - Psyr_0091 0.77 +0.9 101,060 - Psyr_0091 0.77 -0.7 101,060 - Psyr_0091 0.77 -0.2 101,060 - Psyr_0091 0.77 +0.5 101,060 - Psyr_0091 0.77 -0.3 101,060 - Psyr_0091 0.77 +2.0 101,060 - Psyr_0091 0.77 +1.5 101,060 - Psyr_0091 0.77 -2.6 101,060 - Psyr_0091 0.77 +2.2 101,060 - Psyr_0091 0.77 +0.6 101,060 - Psyr_0091 0.77 -3.3 101,060 - Psyr_0091 0.77 -1.4 101,350 + -1.0 101,350 + -2.8 101,350 + +2.5 101,350 + +0.7 101,350 + -2.9 101,350 + -1.0 101,350 + +2.2 101,350 + -1.6 101,350 + -0.6 101,350 + -0.6 101,351 - +1.4 101,351 - -1.6 101,351 - +0.4 101,351 - +0.2 101,351 - -3.1 101,402 - -0.8 101,402 - -0.5 101,402 - +1.2 101,436 + +1.5 101,557 - +2.6 101,810 + Psyr_0092 0.21 +1.4 101,810 + Psyr_0092 0.21 -0.1 101,810 + Psyr_0092 0.21 +1.4 101,810 + Psyr_0092 0.21 +0.5 101,810 + Psyr_0092 0.21 -1.3 101,810 + Psyr_0092 0.21 -0.3 101,811 - Psyr_0092 0.21 -1.5 101,811 - Psyr_0092 0.21 +3.3 101,811 - Psyr_0092 0.21 +0.4 101,811 - Psyr_0092 0.21 +1.8 101,811 - Psyr_0092 0.21 +1.2 101,811 - Psyr_0092 0.21 +1.4 101,958 + Psyr_0092 0.44 +1.1 101,959 - Psyr_0092 0.44 +3.1 101,959 - Psyr_0092 0.44 +1.4 101,959 - Psyr_0092 0.44 -3.2 101,959 - Psyr_0092 0.44 -1.0 102,301 + +0.8 102,302 - +2.2 102,302 - -2.4
Or see this region's nucleotide sequence