Experiment: apoplastic, grinding recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0080 and Psyr_0081 are separated by 200 nucleotides Psyr_0081 and Psyr_0082 are separated by 2 nucleotides Psyr_0082 and Psyr_0083 are separated by 13 nucleotides
Psyr_0080: Psyr_0080 - Protein of unknown function DUF81, at 86,468 to 87,280
_0080
Psyr_0081: Psyr_0081 - ABC transporter, at 87,481 to 88,461
_0081
Psyr_0082: Psyr_0082 - Binding-protein-dependent transport systems inner membrane component, at 88,464 to 89,336
_0082
Psyr_0083: Psyr_0083 - Binding-protein-dependent transport systems inner membrane component, at 89,350 to 90,171
_0083
Position (kb) 87
88
89 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 86.520 kb on + strand at 86.697 kb on - strand, within Psyr_0080 at 86.697 kb on - strand, within Psyr_0080 at 86.697 kb on - strand, within Psyr_0080 at 86.715 kb on + strand, within Psyr_0080 at 86.715 kb on + strand, within Psyr_0080 at 86.716 kb on - strand, within Psyr_0080 at 86.716 kb on - strand, within Psyr_0080 at 86.716 kb on - strand, within Psyr_0080 at 86.798 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.812 kb on + strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.813 kb on - strand, within Psyr_0080 at 86.871 kb on + strand, within Psyr_0080 at 86.871 kb on + strand, within Psyr_0080 at 86.871 kb on + strand, within Psyr_0080 at 86.871 kb on + strand, within Psyr_0080 at 86.871 kb on + strand, within Psyr_0080 at 87.121 kb on + strand, within Psyr_0080 at 87.121 kb on + strand, within Psyr_0080 at 87.122 kb on - strand, within Psyr_0080 at 87.341 kb on + strand at 87.456 kb on + strand at 87.456 kb on + strand at 87.456 kb on + strand at 87.456 kb on + strand at 87.456 kb on + strand at 87.456 kb on + strand at 87.456 kb on + strand at 87.456 kb on + strand at 87.456 kb on + strand at 87.456 kb on + strand at 87.457 kb on - strand at 87.457 kb on - strand at 87.457 kb on - strand at 87.457 kb on - strand at 87.457 kb on - strand at 87.457 kb on - strand at 87.457 kb on - strand at 87.459 kb on - strand at 87.483 kb on - strand at 87.483 kb on - strand at 87.788 kb on + strand, within Psyr_0081 at 87.789 kb on - strand, within Psyr_0081 at 88.465 kb on + strand at 88.465 kb on + strand at 88.466 kb on - strand at 88.482 kb on - strand at 88.588 kb on + strand, within Psyr_0082 at 88.588 kb on + strand, within Psyr_0082 at 88.589 kb on - strand, within Psyr_0082 at 88.589 kb on - strand, within Psyr_0082 at 88.589 kb on - strand, within Psyr_0082 at 88.589 kb on - strand, within Psyr_0082 at 88.695 kb on - strand, within Psyr_0082 at 88.712 kb on - strand, within Psyr_0082 at 88.963 kb on + strand, within Psyr_0082 at 88.963 kb on + strand, within Psyr_0082 at 88.963 kb on + strand, within Psyr_0082 at 88.964 kb on - strand, within Psyr_0082 at 88.964 kb on - strand, within Psyr_0082 at 88.964 kb on - strand, within Psyr_0082 at 88.964 kb on - strand, within Psyr_0082 at 89.044 kb on + strand, within Psyr_0082 at 89.044 kb on + strand, within Psyr_0082 at 89.045 kb on - strand, within Psyr_0082 at 89.045 kb on - strand, within Psyr_0082 at 89.239 kb on - strand, within Psyr_0082 at 89.329 kb on + strand at 89.329 kb on + strand at 89.329 kb on + strand at 89.329 kb on + strand at 89.330 kb on - strand at 89.330 kb on - strand at 89.330 kb on - strand at 89.450 kb on + strand, within Psyr_0083 at 89.450 kb on + strand, within Psyr_0083 at 89.451 kb on - strand, within Psyr_0083 at 89.451 kb on - strand, within Psyr_0083
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, grinding recovery; Green bean remove 86,520 + +2.7 86,697 - Psyr_0080 0.28 -0.8 86,697 - Psyr_0080 0.28 -2.0 86,697 - Psyr_0080 0.28 +1.4 86,715 + Psyr_0080 0.30 -2.8 86,715 + Psyr_0080 0.30 +1.4 86,716 - Psyr_0080 0.31 +1.4 86,716 - Psyr_0080 0.31 -0.8 86,716 - Psyr_0080 0.31 -0.9 86,798 + Psyr_0080 0.41 +1.5 86,812 + Psyr_0080 0.42 -1.0 86,812 + Psyr_0080 0.42 +0.5 86,812 + Psyr_0080 0.42 -3.3 86,812 + Psyr_0080 0.42 -1.9 86,812 + Psyr_0080 0.42 +0.8 86,812 + Psyr_0080 0.42 +0.3 86,812 + Psyr_0080 0.42 -1.7 86,812 + Psyr_0080 0.42 -2.5 86,812 + Psyr_0080 0.42 -0.5 86,812 + Psyr_0080 0.42 +1.2 86,812 + Psyr_0080 0.42 -1.8 86,812 + Psyr_0080 0.42 -0.1 86,812 + Psyr_0080 0.42 -2.0 86,812 + Psyr_0080 0.42 +2.6 86,812 + Psyr_0080 0.42 +1.9 86,812 + Psyr_0080 0.42 -1.4 86,812 + Psyr_0080 0.42 -3.2 86,813 - Psyr_0080 0.42 -1.3 86,813 - Psyr_0080 0.42 +1.9 86,813 - Psyr_0080 0.42 -0.5 86,813 - Psyr_0080 0.42 -0.3 86,813 - Psyr_0080 0.42 +1.1 86,813 - Psyr_0080 0.42 -2.6 86,813 - Psyr_0080 0.42 +0.9 86,813 - Psyr_0080 0.42 +1.2 86,813 - Psyr_0080 0.42 -0.8 86,813 - Psyr_0080 0.42 +1.1 86,813 - Psyr_0080 0.42 +3.0 86,813 - Psyr_0080 0.42 +1.0 86,813 - Psyr_0080 0.42 -0.1 86,813 - Psyr_0080 0.42 +0.2 86,813 - Psyr_0080 0.42 -1.0 86,813 - Psyr_0080 0.42 -0.4 86,813 - Psyr_0080 0.42 -1.1 86,813 - Psyr_0080 0.42 +1.7 86,813 - Psyr_0080 0.42 +0.0 86,813 - Psyr_0080 0.42 +0.1 86,813 - Psyr_0080 0.42 -0.8 86,813 - Psyr_0080 0.42 -0.1 86,813 - Psyr_0080 0.42 -2.7 86,813 - Psyr_0080 0.42 +0.2 86,813 - Psyr_0080 0.42 -0.9 86,813 - Psyr_0080 0.42 -3.5 86,813 - Psyr_0080 0.42 -1.4 86,871 + Psyr_0080 0.50 +0.8 86,871 + Psyr_0080 0.50 +1.5 86,871 + Psyr_0080 0.50 +0.7 86,871 + Psyr_0080 0.50 +0.2 86,871 + Psyr_0080 0.50 -0.0 87,121 + Psyr_0080 0.80 -0.3 87,121 + Psyr_0080 0.80 -1.8 87,122 - Psyr_0080 0.80 +1.0 87,341 + -0.2 87,456 + -1.4 87,456 + -2.1 87,456 + -1.8 87,456 + +0.9 87,456 + -2.5 87,456 + +0.4 87,456 + -1.9 87,456 + +0.9 87,456 + +0.7 87,456 + +2.5 87,457 - -3.6 87,457 - -0.9 87,457 - -0.8 87,457 - -2.3 87,457 - +2.1 87,457 - +0.4 87,457 - -1.8 87,459 - +1.1 87,483 - -0.4 87,483 - -0.6 87,788 + Psyr_0081 0.31 -0.9 87,789 - Psyr_0081 0.31 -1.5 88,465 + +1.9 88,465 + +1.8 88,466 - -0.9 88,482 - +0.5 88,588 + Psyr_0082 0.14 +1.3 88,588 + Psyr_0082 0.14 +1.2 88,589 - Psyr_0082 0.14 +0.4 88,589 - Psyr_0082 0.14 +2.0 88,589 - Psyr_0082 0.14 -0.3 88,589 - Psyr_0082 0.14 +0.2 88,695 - Psyr_0082 0.26 -1.7 88,712 - Psyr_0082 0.28 +0.1 88,963 + Psyr_0082 0.57 -0.2 88,963 + Psyr_0082 0.57 -0.8 88,963 + Psyr_0082 0.57 -2.7 88,964 - Psyr_0082 0.57 -1.7 88,964 - Psyr_0082 0.57 +1.4 88,964 - Psyr_0082 0.57 -3.6 88,964 - Psyr_0082 0.57 -2.1 89,044 + Psyr_0082 0.66 +0.8 89,044 + Psyr_0082 0.66 +0.0 89,045 - Psyr_0082 0.67 +1.5 89,045 - Psyr_0082 0.67 +0.4 89,239 - Psyr_0082 0.89 +0.8 89,329 + -0.5 89,329 + +0.9 89,329 + +2.3 89,329 + +0.2 89,330 - -2.5 89,330 - +0.1 89,330 - -0.1 89,450 + Psyr_0083 0.12 +0.2 89,450 + Psyr_0083 0.12 -2.5 89,451 - Psyr_0083 0.12 -0.6 89,451 - Psyr_0083 0.12 +2.0
Or see this region's nucleotide sequence