Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17830

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,896,810	-		LRK54_RS17820	0.89	-0.3
3,897,012	+				-0.5
3,897,012	+				-1.7
3,897,012	+				-0.5
3,897,012	+				-0.1
3,897,012	+				-0.9
3,897,012	+				-0.3
3,897,012	+				+0.8
3,897,012	+				+0.1
3,897,012	+				+0.4
3,897,012	+				+1.0
3,897,012	+				+0.3
3,897,012	+				+0.2
3,897,012	+				+0.3
3,897,012	+				-0.6
3,897,012	+				+0.5
3,897,012	+				-0.9
3,897,012	+				-0.5
3,897,012	+				-0.7
3,897,012	+				-0.1
3,897,013	-				+0.9
3,897,013	-				-0.4
3,897,013	-				+0.8
3,897,013	-				+0.8
3,897,013	-				-1.3
3,897,013	-				+0.3
3,897,013	-				-0.9
3,897,013	-				+0.1
3,897,013	-				-1.1
3,897,063	-				+2.0
3,897,063	-				-0.8
3,897,094	+				-1.9
3,897,094	+				+1.8
3,897,095	-				-0.0
3,897,095	-				-0.5
3,897,115	+				+0.3
3,897,115	+				-0.9
3,897,115	+				-0.7
3,897,116	-				+0.2
3,897,116	-				-1.4
3,897,116	-				-0.8
3,897,252	-				+0.6
3,897,252	-				+0.2
3,897,357	-		LRK54_RS17825	0.13	+0.3
3,897,380	+		LRK54_RS17825	0.18	+0.4
3,897,381	-		LRK54_RS17825	0.18	+0.8
3,897,402	+		LRK54_RS17825	0.23	-0.1
3,897,403	-		LRK54_RS17825	0.24	+0.7
3,897,403	-		LRK54_RS17825	0.24	-0.2
3,897,403	-		LRK54_RS17825	0.24	-1.0
3,897,403	-		LRK54_RS17825	0.24	-0.4
3,897,567	+		LRK54_RS17825	0.62	-0.2
3,897,567	+		LRK54_RS17825	0.62	-0.7
3,897,567	+		LRK54_RS17825	0.62	-1.1
3,897,567	+		LRK54_RS17825	0.62	+0.6
3,897,567	+		LRK54_RS17825	0.62	-0.4
3,897,568	-		LRK54_RS17825	0.62	-0.6
3,897,568	-		LRK54_RS17825	0.62	-0.7
3,897,568	-		LRK54_RS17825	0.62	+0.5
3,897,588	+		LRK54_RS17825	0.67	-0.2
3,897,589	-		LRK54_RS17825	0.67	-0.3
3,897,589	-		LRK54_RS17825	0.67	+2.3
3,897,589	-		LRK54_RS17825	0.67	+0.8
3,897,589	-		LRK54_RS17825	0.67	+0.5
3,897,718	+				-0.2
3,897,718	+				-1.1
3,897,718	+				+0.1
3,897,718	+				-1.3
3,897,718	+				-1.3
3,897,718	+				-1.4
3,897,718	+				-0.1
3,897,718	+				-0.5
3,897,718	+				+1.0
3,897,718	+				-1.1
3,897,719	-				-0.3
3,897,719	-				+1.9
3,897,719	-				-0.7
3,897,719	-				+0.7
3,897,719	-				+0.4
3,897,719	-				+1.1
3,897,719	-				+0.2
3,897,719	-				+0.3
3,897,719	-				-0.3
3,897,719	-				+0.2
3,897,719	-				+1.0
3,897,719	-				-0.7
3,897,719	-				+0.6
3,897,719	-				-0.0
3,897,719	-				-1.7
3,897,719	-				-0.9
3,897,719	-				+0.2
3,897,719	-				-0.2
3,897,719	-				-0.1
3,897,719	-				-0.1
3,897,722	+				-0.2
3,897,722	+				+0.3
3,897,723	-				-0.6
3,897,730	+				-1.4
3,897,730	+				+1.0
3,897,730	+				+0.5
3,897,730	+				-1.1
3,897,730	+				+0.3
3,897,730	+				-1.0
3,897,730	+				+1.4
3,897,730	+				+0.6
3,897,730	+				-0.7
3,897,730	+				+0.0
3,897,730	+				-0.8
3,897,730	+				+0.0
3,897,730	+				+1.0
3,897,731	-				-1.4
3,897,731	-				-0.0
3,897,731	-				+0.4
3,897,731	-				-1.2
3,897,731	-				-0.9
3,897,731	-				-1.2
3,897,731	-				-1.7
3,897,731	-				+0.6
3,897,731	-				-0.0
3,897,731	-				+1.6
3,897,731	-				+0.3
3,897,731	-				-3.3
3,897,731	-				-0.7
3,897,731	-				-0.9
3,897,732	-				-0.3
3,897,758	+				-0.3
3,897,759	-				-0.2
3,897,772	+				-1.0
3,897,965	+		LRK54_RS17830	0.77	+0.2
3,897,965	+		LRK54_RS17830	0.77	+0.4
3,898,052	+				+1.5
3,898,052	+				-0.7
3,898,052	+				-0.4
3,898,052	+				-0.2
3,898,053	-				-0.9
3,898,053	-				-0.8
3,898,053	-				-0.0
3,898,053	-				+0.9
3,898,071	-				-0.5
3,898,128	-		LRK54_RS17835	0.22	+0.4
3,898,128	-		LRK54_RS17835	0.22	+0.5
3,898,128	-		LRK54_RS17835	0.22	+0.2
3,898,190	+		LRK54_RS17835	0.39	+1.2
3,898,190	+		LRK54_RS17835	0.39	-0.0
3,898,190	+		LRK54_RS17835	0.39	-0.6
3,898,190	+		LRK54_RS17835	0.39	+0.3
3,898,190	+		LRK54_RS17835	0.39	-1.3
3,898,191	-		LRK54_RS17835	0.39	-0.8
3,898,191	-		LRK54_RS17835	0.39	-0.7
3,898,191	-		LRK54_RS17835	0.39	-0.5
3,898,236	+		LRK54_RS17835	0.51	+0.8
3,898,236	+		LRK54_RS17835	0.51	-1.4
3,898,242	-		LRK54_RS17835	0.53	+0.3
3,898,242	-		LRK54_RS17835	0.53	+0.5
3,898,242	-		LRK54_RS17835	0.53	-0.1
3,898,242	-		LRK54_RS17835	0.53	+2.1
3,898,350	+		LRK54_RS17835	0.83	+0.9
3,898,439	+				-0.5
3,898,440	-				-0.2
3,898,440	-				+0.5
3,898,460	+				-1.0
3,898,461	-				-0.9
3,898,464	+				-0.2
3,898,464	+				-0.2
3,898,464	+				+0.2
3,898,464	+				+0.0
3,898,464	+				-1.0
3,898,464	+				+1.0
3,898,464	+				+0.4
3,898,465	-				-0.7
3,898,465	-				-0.2
3,898,465	-				-1.2
3,898,469	-				+2.0
3,898,556	+		LRK54_RS17840	0.10	-0.5
3,898,556	+		LRK54_RS17840	0.10	+0.1
3,898,556	+		LRK54_RS17840	0.10	-0.9
3,898,556	+		LRK54_RS17840	0.10	+0.4
3,898,556	+		LRK54_RS17840	0.10	+0.8
3,898,556	+		LRK54_RS17840	0.10	-0.6
3,898,556	+		LRK54_RS17840	0.10	-0.4
3,898,557	-		LRK54_RS17840	0.10	+0.2
3,898,557	-		LRK54_RS17840	0.10	-1.2
3,898,557	-		LRK54_RS17840	0.10	-0.3
3,898,557	-		LRK54_RS17840	0.10	+0.2
3,898,557	-		LRK54_RS17840	0.10	+0.8
3,898,557	-		LRK54_RS17840	0.10	+0.5
3,898,557	-		LRK54_RS17840	0.10	-1.7
3,898,557	-		LRK54_RS17840	0.10	-0.5
3,898,557	-		LRK54_RS17840	0.10	-0.5
3,898,557	-		LRK54_RS17840	0.10	-0.2
3,898,557	-		LRK54_RS17840	0.10	+0.0
3,898,557	-		LRK54_RS17840	0.10	+1.1
3,898,557	-		LRK54_RS17840	0.10	+0.1
3,898,557	-		LRK54_RS17840	0.10	-1.6
3,898,664	-		LRK54_RS17840	0.24	-1.9
3,898,664	-		LRK54_RS17840	0.24	-0.3
3,898,755	+		LRK54_RS17840	0.36	-0.7
3,898,755	+		LRK54_RS17840	0.36	-1.1
3,898,755	+		LRK54_RS17840	0.36	-0.2
3,898,755	+		LRK54_RS17840	0.36	-0.2
3,898,755	+		LRK54_RS17840	0.36	-0.7
3,898,756	-		LRK54_RS17840	0.36	+0.3
3,898,756	-		LRK54_RS17840	0.36	-0.9
3,898,756	-		LRK54_RS17840	0.36	-0.8
3,898,811	+		LRK54_RS17840	0.43	+1.3
3,898,811	+		LRK54_RS17840	0.43	+0.1
3,898,811	+		LRK54_RS17840	0.43	-0.7
3,898,811	+		LRK54_RS17840	0.43	-0.2
3,898,811	+		LRK54_RS17840	0.43	-1.8
3,898,811	+		LRK54_RS17840	0.43	+0.1
3,898,812	-		LRK54_RS17840	0.43	-0.5
3,898,812	-		LRK54_RS17840	0.43	-0.2
3,898,812	-		LRK54_RS17840	0.43	+1.5
3,898,812	-		LRK54_RS17840	0.43	-1.0
3,898,829	+		LRK54_RS17840	0.45	-0.4
3,898,829	+		LRK54_RS17840	0.45	-0.2
3,898,829	+		LRK54_RS17840	0.45	+1.5
3,898,829	+		LRK54_RS17840	0.45	-0.4
3,898,829	+		LRK54_RS17840	0.45	+0.7
3,898,830	-		LRK54_RS17840	0.45	+0.5
3,898,830	-		LRK54_RS17840	0.45	+0.0
3,898,830	-		LRK54_RS17840	0.45	-1.5
3,898,830	-		LRK54_RS17840	0.45	+1.0
3,898,830	-		LRK54_RS17840	0.45	-1.2
3,898,830	-		LRK54_RS17840	0.45	-1.4
3,898,926	+		LRK54_RS17840	0.57	+0.8
3,898,926	+		LRK54_RS17840	0.57	+1.6
3,898,926	+		LRK54_RS17840	0.57	+0.4
3,898,926	+		LRK54_RS17840	0.57	+0.5
3,898,926	+		LRK54_RS17840	0.57	-0.6
3,898,926	+		LRK54_RS17840	0.57	-0.8
3,898,926	+		LRK54_RS17840	0.57	+1.3
3,898,926	+		LRK54_RS17840	0.57	+0.3
3,898,926	+		LRK54_RS17840	0.57	-0.0
3,898,926	+		LRK54_RS17840	0.57	-1.0
3,898,926	+		LRK54_RS17840	0.57	-1.4
3,898,926	+		LRK54_RS17840	0.57	-0.8
3,898,926	+		LRK54_RS17840	0.57	-1.3
3,898,926	+		LRK54_RS17840	0.57	-0.0
3,898,927	-		LRK54_RS17840	0.58	+1.2
3,898,927	-		LRK54_RS17840	0.58	-1.1
3,898,927	-		LRK54_RS17840	0.58	-0.0
3,898,927	-		LRK54_RS17840	0.58	-1.7
3,898,927	-		LRK54_RS17840	0.58	-0.2
3,898,927	-		LRK54_RS17840	0.58	+0.5
3,898,927	-		LRK54_RS17840	0.58	-0.2
3,898,927	-		LRK54_RS17840	0.58	-0.8
3,898,930	+		LRK54_RS17840	0.58	-0.7
3,898,930	+		LRK54_RS17840	0.58	+1.3
3,898,930	+		LRK54_RS17840	0.58	-1.2
3,898,930	+		LRK54_RS17840	0.58	+0.8
3,898,930	+		LRK54_RS17840	0.58	-0.4
3,898,930	+		LRK54_RS17840	0.58	+0.7
3,898,931	-		LRK54_RS17840	0.58	+1.0
3,898,931	-		LRK54_RS17840	0.58	-0.1
3,899,025	+		LRK54_RS17840	0.70	-2.1
3,899,026	-		LRK54_RS17840	0.70	-0.2