Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17555

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,834,948	+		LRK54_RS17545	0.45	-0.9
3,834,948	+		LRK54_RS17545	0.45	-0.7
3,834,948	+		LRK54_RS17545	0.45	-0.2
3,834,949	-		LRK54_RS17545	0.45	-0.1
3,834,949	-		LRK54_RS17545	0.45	-0.9
3,835,045	+		LRK54_RS17545	0.55	-1.5
3,835,203	+		LRK54_RS17545	0.71	+2.8
3,835,203	+		LRK54_RS17545	0.71	-1.0
3,835,203	+		LRK54_RS17545	0.71	+0.3
3,835,203	+		LRK54_RS17545	0.71	-1.0
3,835,203	+		LRK54_RS17545	0.71	-0.4
3,835,203	+		LRK54_RS17545	0.71	+0.7
3,835,203	+		LRK54_RS17545	0.71	-0.8
3,835,203	+		LRK54_RS17545	0.71	-0.2
3,835,203	+		LRK54_RS17545	0.71	+0.2
3,835,203	+		LRK54_RS17545	0.71	+0.6
3,835,203	+		LRK54_RS17545	0.71	-0.9
3,835,204	-		LRK54_RS17545	0.71	+0.8
3,835,204	-		LRK54_RS17545	0.71	-0.2
3,835,204	-		LRK54_RS17545	0.71	-1.6
3,835,204	-		LRK54_RS17545	0.71	+0.7
3,835,380	+		LRK54_RS17545	0.89	+0.9
3,835,380	+		LRK54_RS17545	0.89	+0.4
3,835,381	-		LRK54_RS17545	0.90	-0.2
3,835,381	-		LRK54_RS17545	0.90	+0.7
3,835,381	-		LRK54_RS17545	0.90	-0.5
3,835,381	-		LRK54_RS17545	0.90	-0.2
3,835,381	-		LRK54_RS17545	0.90	+1.0
3,835,381	-		LRK54_RS17545	0.90	+0.3
3,835,414	+				+0.3
3,835,414	+				-1.5
3,835,414	+				-1.2
3,835,415	-				+0.1
3,835,415	-				+0.5
3,835,415	-				+0.6
3,835,459	+				+0.7
3,835,459	+				-0.8
3,835,460	-				-1.5
3,835,460	-				+0.4
3,835,460	-				+0.3
3,835,460	-				-0.1
3,835,460	-				+0.3
3,835,460	-				-0.9
3,835,460	-				+0.3
3,835,460	-				-2.4
3,835,460	-				+0.3
3,835,486	+				-1.8
3,835,486	+				-1.6
3,835,486	+				-0.3
3,835,486	+				+0.0
3,835,486	+				+0.5
3,835,486	+				-1.0
3,835,487	-				-0.7
3,835,487	-				-1.1
3,835,487	-				-0.2
3,835,487	-				-1.7
3,835,487	-				+0.4
3,835,505	+				+0.1
3,835,506	-				-0.2
3,835,606	+		LRK54_RS17550	0.16	+0.5
3,835,607	-		LRK54_RS17550	0.16	-1.4
3,835,741	+		LRK54_RS17550	0.57	-1.5
3,835,741	+		LRK54_RS17550	0.57	+0.1
3,835,741	+		LRK54_RS17550	0.57	-1.4
3,835,741	+		LRK54_RS17550	0.57	-0.0
3,835,741	+		LRK54_RS17550	0.57	+0.1
3,835,741	+		LRK54_RS17550	0.57	+0.8
3,835,742	-		LRK54_RS17550	0.57	-0.7
3,835,742	-		LRK54_RS17550	0.57	+0.1
3,835,742	-		LRK54_RS17550	0.57	+0.0
3,835,932	+				-2.0
3,835,932	+				-0.5
3,835,932	+				-1.4
3,835,932	+				-1.4
3,835,932	+				+0.5
3,835,933	-				-0.6
3,835,933	-				-1.0
3,835,933	-				-2.0
3,836,067	-				-2.4
3,836,096	-				-1.2
3,836,096	-				-1.7
3,836,241	+		LRK54_RS17555	0.12	-1.8
3,836,241	+		LRK54_RS17555	0.12	-2.5
3,836,241	+		LRK54_RS17555	0.12	-1.8
3,836,241	+		LRK54_RS17555	0.12	-0.2
3,836,241	+		LRK54_RS17555	0.12	+1.3
3,836,241	+		LRK54_RS17555	0.12	+2.1
3,836,241	+		LRK54_RS17555	0.12	-0.7
3,836,241	+		LRK54_RS17555	0.12	-1.1
3,836,242	-		LRK54_RS17555	0.12	-1.7
3,836,242	-		LRK54_RS17555	0.12	-1.6
3,836,242	-		LRK54_RS17555	0.12	-2.0
3,836,242	-		LRK54_RS17555	0.12	-0.1
3,836,242	-		LRK54_RS17555	0.12	+0.3
3,836,242	-		LRK54_RS17555	0.12	-1.3
3,836,242	-		LRK54_RS17555	0.12	-0.5
3,836,340	+		LRK54_RS17555	0.15	-0.7
3,836,340	+		LRK54_RS17555	0.15	-1.1
3,836,341	-		LRK54_RS17555	0.15	-0.6
3,836,439	+		LRK54_RS17555	0.18	-2.7
3,836,439	+		LRK54_RS17555	0.18	+0.3
3,836,439	+		LRK54_RS17555	0.18	-1.1
3,836,440	-		LRK54_RS17555	0.18	-0.7
3,836,440	-		LRK54_RS17555	0.18	-1.4
3,836,442	+		LRK54_RS17555	0.18	+1.3
3,836,442	+		LRK54_RS17555	0.18	-0.3
3,836,443	-		LRK54_RS17555	0.18	-2.4
3,836,443	-		LRK54_RS17555	0.18	-1.2
3,836,542	-		LRK54_RS17555	0.21	+0.5
3,836,542	-		LRK54_RS17555	0.21	-1.6
3,836,574	+		LRK54_RS17555	0.22	-2.0
3,836,574	+		LRK54_RS17555	0.22	-2.1
3,836,574	+		LRK54_RS17555	0.22	+1.3
3,836,575	-		LRK54_RS17555	0.22	-0.3
3,836,575	-		LRK54_RS17555	0.22	-1.6
3,836,726	+		LRK54_RS17555	0.27	+0.1
3,836,727	-		LRK54_RS17555	0.27	-1.2
3,836,727	-		LRK54_RS17555	0.27	-2.4
3,836,946	+		LRK54_RS17555	0.34	-3.7
3,836,946	+		LRK54_RS17555	0.34	+0.0
3,836,946	+		LRK54_RS17555	0.34	-1.1
3,836,946	+		LRK54_RS17555	0.34	+0.6
3,836,947	-		LRK54_RS17555	0.34	-0.5
3,836,947	-		LRK54_RS17555	0.34	-0.8
3,836,947	-		LRK54_RS17555	0.34	-2.3
3,836,947	-		LRK54_RS17555	0.34	-1.7
3,836,947	-		LRK54_RS17555	0.34	-0.2
3,837,018	+		LRK54_RS17555	0.36	-0.2
3,837,129	+		LRK54_RS17555	0.40	-0.2
3,837,129	+		LRK54_RS17555	0.40	-0.2
3,837,129	+		LRK54_RS17555	0.40	-1.3
3,837,129	+		LRK54_RS17555	0.40	+1.3
3,837,129	+		LRK54_RS17555	0.40	-1.0
3,837,129	+		LRK54_RS17555	0.40	-1.3
3,837,129	+		LRK54_RS17555	0.40	-1.0
3,837,130	-		LRK54_RS17555	0.40	-1.6
3,837,130	-		LRK54_RS17555	0.40	-1.6
3,837,130	-		LRK54_RS17555	0.40	-0.3
3,837,130	-		LRK54_RS17555	0.40	-1.8
3,837,130	-		LRK54_RS17555	0.40	-1.6
3,837,141	+		LRK54_RS17555	0.40	-0.7
3,837,141	+		LRK54_RS17555	0.40	-0.1
3,837,141	+		LRK54_RS17555	0.40	-0.3
3,837,141	+		LRK54_RS17555	0.40	-1.0
3,837,141	+		LRK54_RS17555	0.40	-2.1
3,837,141	+		LRK54_RS17555	0.40	-0.0
3,837,141	+		LRK54_RS17555	0.40	-1.0
3,837,141	+		LRK54_RS17555	0.40	-0.2
3,837,142	-		LRK54_RS17555	0.40	-0.2
3,837,142	-		LRK54_RS17555	0.40	-0.5
3,837,142	-		LRK54_RS17555	0.40	-3.0
3,837,142	-		LRK54_RS17555	0.40	+0.8
3,837,142	-		LRK54_RS17555	0.40	-1.0
3,837,142	-		LRK54_RS17555	0.40	-0.8
3,837,142	-		LRK54_RS17555	0.40	-1.0
3,837,286	+		LRK54_RS17555	0.45	-2.4
3,837,286	+		LRK54_RS17555	0.45	-1.9
3,837,287	-		LRK54_RS17555	0.45	-0.5
3,837,287	-		LRK54_RS17555	0.45	-1.8
3,837,287	-		LRK54_RS17555	0.45	-1.8
3,837,395	+		LRK54_RS17555	0.48	-2.1
3,837,395	+		LRK54_RS17555	0.48	-1.4
3,837,395	+		LRK54_RS17555	0.48	-1.7
3,837,395	+		LRK54_RS17555	0.48	-2.2
3,837,395	+		LRK54_RS17555	0.48	-1.1
3,837,395	+		LRK54_RS17555	0.48	-0.2
3,837,395	+		LRK54_RS17555	0.48	-1.3
3,837,395	+		LRK54_RS17555	0.48	-1.7
3,837,396	-		LRK54_RS17555	0.48	-1.5
3,837,396	-		LRK54_RS17555	0.48	-1.8
3,837,396	-		LRK54_RS17555	0.48	-1.9
3,837,396	-		LRK54_RS17555	0.48	-0.2
3,837,435	+		LRK54_RS17555	0.50	-1.4
3,837,435	+		LRK54_RS17555	0.50	+0.4
3,837,436	-		LRK54_RS17555	0.50	-0.3
3,837,436	-		LRK54_RS17555	0.50	-2.4
3,837,436	-		LRK54_RS17555	0.50	+1.3
3,837,436	-		LRK54_RS17555	0.50	-0.8
3,837,559	+		LRK54_RS17555	0.54	-1.4
3,837,560	-		LRK54_RS17555	0.54	-1.4
3,838,025	+		LRK54_RS17555	0.69	-1.2
3,838,212	+		LRK54_RS17555	0.74	+0.3
3,838,212	+		LRK54_RS17555	0.74	-1.7
3,838,213	-		LRK54_RS17555	0.75	-1.1
3,838,213	-		LRK54_RS17555	0.75	-0.7
3,838,213	-		LRK54_RS17555	0.75	-1.9
3,838,213	-		LRK54_RS17555	0.75	-0.8
3,838,289	+		LRK54_RS17555	0.77	-0.7
3,838,290	-		LRK54_RS17555	0.77	-0.4
3,838,290	-		LRK54_RS17555	0.77	-1.2
3,838,290	-		LRK54_RS17555	0.77	-1.0
3,838,296	+		LRK54_RS17555	0.77	-1.7
3,838,296	+		LRK54_RS17555	0.77	-0.1
3,838,297	-		LRK54_RS17555	0.77	+0.4
3,838,297	-		LRK54_RS17555	0.77	-2.1
3,838,297	-		LRK54_RS17555	0.77	-0.7
3,838,585	-		LRK54_RS17555	0.86	-1.5
3,838,701	+				-1.6
3,838,701	+				-0.6
3,838,701	+				-2.6
3,838,701	+				-1.5
3,838,701	+				-1.6
3,838,701	+				-1.9
3,838,701	+				-0.9
3,838,701	+				-1.1
3,838,701	+				-0.3
3,838,701	+				-2.4
3,838,701	+				-1.0
3,838,701	+				+0.3
3,838,701	+				-0.5
3,838,701	+				-0.7
3,838,701	+				-1.8
3,838,701	+				-2.9
3,838,701	+				-1.0
3,838,701	+				-1.6
3,838,701	+				-2.3
3,838,701	+				-0.2
3,838,701	+				+0.1
3,838,702	-				-0.4
3,838,702	-				-1.6
3,838,702	-				-1.1
3,838,702	-				+0.3
3,838,702	-				-1.1
3,838,702	-				-0.7
3,838,702	-				-1.6
3,838,702	-				-0.2
3,838,702	-				-0.6
3,838,702	-				-2.2
3,838,702	-				-1.7
3,838,702	-				-1.1
3,838,702	-				-0.2
3,838,702	-				-1.7
3,838,725	+				-1.7
3,838,725	+				-0.1
3,838,725	+				-1.6
3,838,725	+				-1.2
3,838,726	-				-2.7
3,838,726	-				-2.4
3,838,737	+				-1.4
3,838,737	+				-1.9
3,838,737	+				-0.8
3,838,737	+				-1.2
3,838,737	+				-1.2
3,838,737	+				-2.0
3,838,737	+				-1.6
3,838,737	+				+1.3
3,838,737	+				+0.8
3,838,737	+				+0.3
3,838,737	+				-1.5
3,838,737	+				-1.1
3,838,737	+				-2.8
3,838,737	+				+0.0
3,838,737	+				-1.2
3,838,737	+				-1.6
3,838,737	+				-2.0
3,838,737	+				-1.8
3,838,738	-				-0.2
3,838,738	-				-0.8
3,838,738	-				-2.0
3,838,738	-				+0.6
3,838,738	-				-1.6
3,838,738	-				+0.8
3,838,738	-				-2.6
3,838,738	-				-0.7
3,838,738	-				-2.1
3,838,738	-				-1.9
3,838,738	-				+0.1
3,838,738	-				-0.9
3,838,738	-				-2.4
3,838,738	-				-2.4
3,838,738	-				-1.4
3,838,738	-				-0.5
3,838,738	-				-0.7
3,838,738	-				-2.0
3,838,738	-				-1.4
3,838,738	-				-0.8
3,838,738	-				-1.0
3,838,738	-				-0.5
3,838,738	-				-0.2
3,838,863	+				-1.0
3,838,863	+				-1.4
3,838,863	+				-0.3
3,838,863	+				-0.2
3,838,863	+				+0.3
3,838,863	+				-1.1
3,838,863	+				-1.9
3,838,863	+				-0.9
3,838,864	-				+0.8
3,838,864	-				-0.8
3,838,864	-				-0.7
3,838,977	+				-0.7
3,838,977	+				-0.8
3,838,977	+				+0.0
3,838,977	+				-0.4
3,838,977	+				-1.2
3,838,977	+				-1.7
3,838,978	-				-0.8
3,838,978	-				-1.7
3,839,075	+				-1.5
3,839,075	+				-2.2
3,839,075	+				-0.2
3,839,075	+				-3.0
3,839,075	+				-1.1
3,839,075	+				+0.1
3,839,075	+				-0.1
3,839,075	+				-1.8
3,839,075	+				-1.9
3,839,076	-				-0.1
3,839,076	-				-0.1
3,839,076	-				-0.3
3,839,076	-				-0.5
3,839,076	-				-0.7
3,839,076	-				+0.1
3,839,076	-				-2.5
3,839,076	-				-1.4
3,839,076	-				-1.3
3,839,076	-				+0.5
3,839,643	-		LRK54_RS17560	0.58	-0.2
3,839,693	+		LRK54_RS17560	0.62	+0.0
3,839,694	-		LRK54_RS17560	0.62	-1.7
3,839,694	-		LRK54_RS17560	0.62	+1.8
3,839,897	+		LRK54_RS17560	0.81	-2.3
3,839,897	+		LRK54_RS17560	0.81	-0.2
3,839,897	+		LRK54_RS17560	0.81	-1.8
3,839,897	+		LRK54_RS17560	0.81	-1.0
3,839,897	+		LRK54_RS17560	0.81	-2.1
3,839,898	-		LRK54_RS17560	0.81	-1.0
3,839,898	-		LRK54_RS17560	0.81	-1.1
3,839,898	-		LRK54_RS17560	0.81	-0.3
3,839,898	-		LRK54_RS17560	0.81	-0.5
3,839,898	-		LRK54_RS17560	0.81	-2.0
3,839,898	-		LRK54_RS17560	0.81	-0.2
3,839,898	-		LRK54_RS17560	0.81	-2.0
3,839,898	-		LRK54_RS17560	0.81	-2.1