Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17400

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,800,426	-		LRK54_RS17395	0.11	-0.7
3,800,548	+		LRK54_RS17395	0.23	+0.2
3,800,548	+		LRK54_RS17395	0.23	-0.3
3,800,548	+		LRK54_RS17395	0.23	+0.3
3,800,548	+		LRK54_RS17395	0.23	-0.0
3,800,548	+		LRK54_RS17395	0.23	-1.5
3,800,548	+		LRK54_RS17395	0.23	-1.7
3,800,548	+		LRK54_RS17395	0.23	-1.0
3,800,549	-		LRK54_RS17395	0.23	-0.5
3,800,549	-		LRK54_RS17395	0.23	+1.2
3,800,549	-		LRK54_RS17395	0.23	+0.9
3,800,549	-		LRK54_RS17395	0.23	-0.1
3,800,549	-		LRK54_RS17395	0.23	-0.5
3,800,549	-		LRK54_RS17395	0.23	+0.8
3,800,549	-		LRK54_RS17395	0.23	+0.0
3,800,549	-		LRK54_RS17395	0.23	-0.7
3,800,585	+		LRK54_RS17395	0.26	-1.8
3,800,585	+		LRK54_RS17395	0.26	-1.1
3,800,585	+		LRK54_RS17395	0.26	-0.3
3,800,585	+		LRK54_RS17395	0.26	-0.7
3,800,585	+		LRK54_RS17395	0.26	+0.8
3,800,585	+		LRK54_RS17395	0.26	-0.1
3,800,585	+		LRK54_RS17395	0.26	+2.1
3,800,585	+		LRK54_RS17395	0.26	+0.1
3,800,585	+		LRK54_RS17395	0.26	-0.7
3,800,586	-		LRK54_RS17395	0.27	+0.2
3,800,586	-		LRK54_RS17395	0.27	-1.0
3,800,586	-		LRK54_RS17395	0.27	-0.8
3,800,586	-		LRK54_RS17395	0.27	-0.1
3,800,586	-		LRK54_RS17395	0.27	+0.5
3,800,586	-		LRK54_RS17395	0.27	-1.8
3,800,586	-		LRK54_RS17395	0.27	-0.2
3,800,586	-		LRK54_RS17395	0.27	-0.3
3,800,586	-		LRK54_RS17395	0.27	-0.6
3,800,586	-		LRK54_RS17395	0.27	+0.1
3,800,586	-		LRK54_RS17395	0.27	+0.3
3,800,588	+		LRK54_RS17395	0.27	-1.0
3,800,588	+		LRK54_RS17395	0.27	+0.3
3,800,589	-		LRK54_RS17395	0.27	+0.5
3,800,589	-		LRK54_RS17395	0.27	-0.6
3,800,589	-		LRK54_RS17395	0.27	-0.8
3,800,681	+		LRK54_RS17395	0.36	-1.6
3,800,682	-		LRK54_RS17395	0.36	+1.2
3,800,682	-		LRK54_RS17395	0.36	-2.4
3,800,682	-		LRK54_RS17395	0.36	+1.7
3,800,682	-		LRK54_RS17395	0.36	-0.9
3,800,822	+		LRK54_RS17395	0.50	-0.5
3,800,822	+		LRK54_RS17395	0.50	-1.6
3,800,822	+		LRK54_RS17395	0.50	-1.1
3,800,823	-		LRK54_RS17395	0.50	+0.1
3,800,823	-		LRK54_RS17395	0.50	-0.4
3,800,934	+		LRK54_RS17395	0.61	-1.0
3,800,934	+		LRK54_RS17395	0.61	-0.7
3,800,954	+		LRK54_RS17395	0.63	+0.0
3,800,954	+		LRK54_RS17395	0.63	+0.8
3,800,954	+		LRK54_RS17395	0.63	+1.0
3,800,954	+		LRK54_RS17395	0.63	-2.2
3,800,955	-		LRK54_RS17395	0.63	-1.1
3,800,987	+		LRK54_RS17395	0.66	+0.5
3,800,987	+		LRK54_RS17395	0.66	-0.6
3,800,987	+		LRK54_RS17395	0.66	-0.6
3,800,987	+		LRK54_RS17395	0.66	-0.2
3,800,987	+		LRK54_RS17395	0.66	+0.2
3,800,987	+		LRK54_RS17395	0.66	-0.8
3,800,987	+		LRK54_RS17395	0.66	-0.7
3,800,987	+		LRK54_RS17395	0.66	+0.5
3,800,987	+		LRK54_RS17395	0.66	+0.8
3,800,987	+		LRK54_RS17395	0.66	-1.2
3,800,987	+		LRK54_RS17395	0.66	-0.4
3,800,987	+		LRK54_RS17395	0.66	+0.3
3,800,987	+		LRK54_RS17395	0.66	+1.6
3,800,987	+		LRK54_RS17395	0.66	+0.7
3,800,987	+		LRK54_RS17395	0.66	-0.2
3,800,988	-		LRK54_RS17395	0.66	-0.2
3,800,988	-		LRK54_RS17395	0.66	+0.8
3,800,988	-		LRK54_RS17395	0.66	-0.1
3,800,988	-		LRK54_RS17395	0.66	-0.2
3,800,988	-		LRK54_RS17395	0.66	-0.2
3,800,988	-		LRK54_RS17395	0.66	-0.2
3,800,988	-		LRK54_RS17395	0.66	-0.4
3,800,988	-		LRK54_RS17395	0.66	-2.3
3,800,988	-		LRK54_RS17395	0.66	-0.2
3,800,988	-		LRK54_RS17395	0.66	-1.3
3,800,988	-		LRK54_RS17395	0.66	-0.1
3,800,988	-		LRK54_RS17395	0.66	+0.0
3,800,988	-		LRK54_RS17395	0.66	-0.2
3,800,988	-		LRK54_RS17395	0.66	-0.4
3,800,988	-		LRK54_RS17395	0.66	-0.1
3,800,988	-		LRK54_RS17395	0.66	-0.6
3,800,988	-		LRK54_RS17395	0.66	-2.0
3,800,988	-		LRK54_RS17395	0.66	+0.1
3,800,988	-		LRK54_RS17395	0.66	+1.7
3,800,988	-		LRK54_RS17395	0.66	-1.4
3,801,089	+		LRK54_RS17395	0.76	+0.3
3,801,089	+		LRK54_RS17395	0.76	-0.3
3,801,090	-		LRK54_RS17395	0.77	+0.5
3,801,090	-		LRK54_RS17395	0.77	-0.7
3,801,384	+				-1.6
3,801,384	+				-1.1
3,801,385	-				+0.0
3,801,385	-				+0.8
3,801,385	-				+0.3
3,801,385	-				-0.7
3,801,574	+		LRK54_RS17400	0.46	+0.8
3,801,575	-		LRK54_RS17400	0.46	-0.3
3,801,575	-		LRK54_RS17400	0.46	+0.3
3,801,763	+				+0.2
3,801,763	+				+2.8
3,801,763	+				-1.1
3,801,763	+				+0.6
3,801,763	+				+0.8
3,801,763	+				-0.6
3,801,764	-				-0.2
3,801,764	-				-0.6
3,801,764	-				-1.2
3,801,764	-				+0.1
3,801,764	-				-1.5
3,801,764	-				-1.0
3,801,791	-				+0.3
3,801,923	+				-0.2
3,801,923	+				+0.8
3,801,923	+				-0.3
3,801,923	+				-0.7
3,801,923	+				+2.9
3,801,924	-				+0.3
3,801,924	-				-0.8
3,801,924	-				+0.5
3,801,924	-				+0.6
3,801,924	-				+1.3
3,801,924	-				+0.1
3,801,924	-				-0.8
3,801,924	-				-2.1
3,801,924	-				-1.0
3,802,009	+				-0.5
3,802,010	-				+1.6
3,802,106	+		LRK54_RS17405	0.14	+0.0
3,802,106	+		LRK54_RS17405	0.14	-2.3
3,802,106	+		LRK54_RS17405	0.14	-0.5
3,802,106	+		LRK54_RS17405	0.14	+1.9
3,802,106	+		LRK54_RS17405	0.14	+0.0
3,802,107	-		LRK54_RS17405	0.14	+0.3
3,802,107	-		LRK54_RS17405	0.14	-0.6
3,802,107	-		LRK54_RS17405	0.14	+1.3
3,802,107	-		LRK54_RS17405	0.14	-0.1
3,802,181	+		LRK54_RS17405	0.20	+0.3
3,802,181	+		LRK54_RS17405	0.20	-0.9
3,802,181	+		LRK54_RS17405	0.20	-0.1
3,802,181	+		LRK54_RS17405	0.20	+0.6
3,802,181	+		LRK54_RS17405	0.20	+0.7
3,802,181	+		LRK54_RS17405	0.20	-0.7
3,802,181	+		LRK54_RS17405	0.20	+1.3
3,802,181	+		LRK54_RS17405	0.20	-1.1
3,802,182	-		LRK54_RS17405	0.20	+0.0
3,802,182	-		LRK54_RS17405	0.20	+0.6
3,802,182	-		LRK54_RS17405	0.20	+0.8
3,802,589	+		LRK54_RS17405	0.52	-0.7
3,802,589	+		LRK54_RS17405	0.52	-0.7
3,802,589	+		LRK54_RS17405	0.52	-0.7
3,802,589	+		LRK54_RS17405	0.52	+0.0
3,802,589	+		LRK54_RS17405	0.52	-0.2
3,802,589	+		LRK54_RS17405	0.52	-0.3
3,802,590	-		LRK54_RS17405	0.52	+1.5
3,802,590	-		LRK54_RS17405	0.52	+0.2
3,802,590	-		LRK54_RS17405	0.52	-1.5
3,802,590	-		LRK54_RS17405	0.52	-1.7
3,802,634	+		LRK54_RS17405	0.55	-0.8
3,802,634	+		LRK54_RS17405	0.55	-0.2
3,802,634	+		LRK54_RS17405	0.55	+0.5
3,802,635	-		LRK54_RS17405	0.55	-0.3
3,802,721	+		LRK54_RS17405	0.62	-2.0
3,802,721	+		LRK54_RS17405	0.62	-0.4
3,802,721	+		LRK54_RS17405	0.62	+0.8
3,802,721	+		LRK54_RS17405	0.62	-0.4
3,802,722	-		LRK54_RS17405	0.62	-0.0
3,802,722	-		LRK54_RS17405	0.62	+1.1
3,802,722	-		LRK54_RS17405	0.62	-1.1
3,802,722	-		LRK54_RS17405	0.62	+0.1
3,802,722	-		LRK54_RS17405	0.62	+0.0
3,802,722	-		LRK54_RS17405	0.62	-1.8
3,802,744	+		LRK54_RS17405	0.64	+0.3
3,802,744	+		LRK54_RS17405	0.64	-1.3
3,802,744	+		LRK54_RS17405	0.64	-0.8
3,802,744	+		LRK54_RS17405	0.64	-0.2
3,802,744	+		LRK54_RS17405	0.64	+0.8
3,802,744	+		LRK54_RS17405	0.64	+0.3
3,802,745	-		LRK54_RS17405	0.64	+0.6
3,802,745	-		LRK54_RS17405	0.64	+0.8
3,802,745	-		LRK54_RS17405	0.64	-0.4
3,802,745	-		LRK54_RS17405	0.64	+0.6
3,802,745	-		LRK54_RS17405	0.64	+1.5
3,802,745	-		LRK54_RS17405	0.64	-1.8
3,802,745	-		LRK54_RS17405	0.64	+0.3
3,802,745	-		LRK54_RS17405	0.64	+0.2
3,802,745	-		LRK54_RS17405	0.64	-1.0
3,802,763	+		LRK54_RS17405	0.65	-2.0