Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17295

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,778,611	+		LRK54_RS17290	0.36	+1.5
3,778,611	+		LRK54_RS17290	0.36	-0.4
3,778,612	-		LRK54_RS17290	0.37	+0.2
3,778,758	+		LRK54_RS17290	0.47	-0.2
3,778,758	+		LRK54_RS17290	0.47	+0.4
3,778,758	+		LRK54_RS17290	0.47	+1.3
3,778,758	+		LRK54_RS17290	0.47	+0.9
3,778,758	+		LRK54_RS17290	0.47	-1.0
3,778,758	+		LRK54_RS17290	0.47	-0.3
3,778,758	+		LRK54_RS17290	0.47	+0.5
3,778,758	+		LRK54_RS17290	0.47	-0.1
3,778,759	-		LRK54_RS17290	0.47	+3.3
3,778,759	-		LRK54_RS17290	0.47	+0.9
3,778,759	-		LRK54_RS17290	0.47	+0.1
3,778,759	-		LRK54_RS17290	0.47	-0.2
3,778,759	-		LRK54_RS17290	0.47	-1.0
3,778,759	-		LRK54_RS17290	0.47	+0.1
3,778,759	-		LRK54_RS17290	0.47	-0.7
3,778,759	-		LRK54_RS17290	0.47	+1.3
3,779,001	+		LRK54_RS17290	0.63	-0.2
3,779,001	+		LRK54_RS17290	0.63	+0.7
3,779,002	-		LRK54_RS17290	0.63	+0.8
3,779,002	-		LRK54_RS17290	0.63	-1.0
3,779,002	-		LRK54_RS17290	0.63	-1.4
3,779,002	-		LRK54_RS17290	0.63	+0.3
3,779,002	-		LRK54_RS17290	0.63	+1.9
3,779,059	-		LRK54_RS17290	0.67	+0.1
3,779,059	-		LRK54_RS17290	0.67	+1.3
3,779,059	-		LRK54_RS17290	0.67	+0.2
3,779,095	-		LRK54_RS17290	0.70	-0.1
3,779,095	-		LRK54_RS17290	0.70	+0.3
3,779,205	+		LRK54_RS17290	0.77	-0.0
3,779,205	+		LRK54_RS17290	0.77	-1.0
3,779,205	+		LRK54_RS17290	0.77	+0.8
3,779,205	+		LRK54_RS17290	0.77	+1.9
3,779,205	+		LRK54_RS17290	0.77	-0.9
3,779,205	+		LRK54_RS17290	0.77	+0.2
3,779,205	+		LRK54_RS17290	0.77	+0.5
3,779,205	+		LRK54_RS17290	0.77	-0.9
3,779,205	+		LRK54_RS17290	0.77	-0.1
3,779,205	+		LRK54_RS17290	0.77	+0.8
3,779,205	+		LRK54_RS17290	0.77	-1.2
3,779,205	+		LRK54_RS17290	0.77	-0.2
3,779,205	+		LRK54_RS17290	0.77	-0.1
3,779,205	+		LRK54_RS17290	0.77	+0.8
3,779,206	-		LRK54_RS17290	0.77	-0.5
3,779,206	-		LRK54_RS17290	0.77	-0.1
3,779,206	-		LRK54_RS17290	0.77	+0.0
3,779,206	-		LRK54_RS17290	0.77	+0.9
3,779,206	-		LRK54_RS17290	0.77	-0.8
3,779,206	-		LRK54_RS17290	0.77	-1.0
3,779,206	-		LRK54_RS17290	0.77	-0.4
3,779,206	-		LRK54_RS17290	0.77	-0.4
3,779,206	-		LRK54_RS17290	0.77	-0.6
3,779,206	-		LRK54_RS17290	0.77	+0.3
3,779,206	-		LRK54_RS17290	0.77	+1.8
3,779,206	-		LRK54_RS17290	0.77	+0.2
3,779,217	+		LRK54_RS17290	0.78	-1.1
3,779,217	+		LRK54_RS17290	0.78	+0.8
3,779,217	+		LRK54_RS17290	0.78	-0.5
3,779,218	-		LRK54_RS17290	0.78	-0.7
3,779,218	-		LRK54_RS17290	0.78	-2.4
3,779,218	-		LRK54_RS17290	0.78	-0.2
3,779,271	+		LRK54_RS17290	0.82	+0.5
3,779,271	+		LRK54_RS17290	0.82	-0.3
3,779,271	+		LRK54_RS17290	0.82	-1.2
3,779,271	+		LRK54_RS17290	0.82	-0.2
3,779,271	+		LRK54_RS17290	0.82	+1.1
3,779,271	+		LRK54_RS17290	0.82	-0.5
3,779,272	-		LRK54_RS17290	0.82	+0.0
3,779,272	-		LRK54_RS17290	0.82	-0.3
3,779,272	-		LRK54_RS17290	0.82	-0.5
3,779,272	-		LRK54_RS17290	0.82	-0.7
3,779,272	-		LRK54_RS17290	0.82	+0.1
3,779,399	+				-0.2
3,779,399	+				+1.0
3,779,399	+				-2.0
3,779,400	-				-2.1
3,779,400	-				-2.0
3,779,509	+				-1.7
3,779,509	+				-0.2
3,779,648	+		LRK54_RS17295	0.17	+1.3
3,779,649	-		LRK54_RS17295	0.17	+1.4
3,779,677	+		LRK54_RS17295	0.21	+0.1
3,779,677	+		LRK54_RS17295	0.21	-1.6
3,779,677	+		LRK54_RS17295	0.21	+2.8
3,779,677	+		LRK54_RS17295	0.21	+0.6
3,779,678	-		LRK54_RS17295	0.21	+1.9
3,779,678	-		LRK54_RS17295	0.21	+0.0
3,779,678	-		LRK54_RS17295	0.21	-0.0
3,780,013	+		LRK54_RS17295	0.71	-0.7
3,780,014	-		LRK54_RS17295	0.72	+0.2
3,780,014	-		LRK54_RS17295	0.72	+1.6
3,780,014	-		LRK54_RS17295	0.72	+0.2
3,780,016	+		LRK54_RS17295	0.72	+0.9
3,780,016	+		LRK54_RS17295	0.72	+0.1
3,780,016	+		LRK54_RS17295	0.72	+0.2
3,780,016	+		LRK54_RS17295	0.72	+0.3
3,780,016	+		LRK54_RS17295	0.72	-0.4
3,780,016	+		LRK54_RS17295	0.72	+0.6
3,780,016	+		LRK54_RS17295	0.72	-0.8
3,780,016	+		LRK54_RS17295	0.72	+0.4
3,780,016	+		LRK54_RS17295	0.72	-0.4
3,780,017	-		LRK54_RS17295	0.72	+0.2
3,780,017	-		LRK54_RS17295	0.72	+1.3
3,780,017	-		LRK54_RS17295	0.72	-1.0
3,780,017	-		LRK54_RS17295	0.72	+1.0
3,780,219	+				-1.8
3,780,219	+				+0.3
3,780,219	+				-1.7
3,780,219	+				+0.2
3,780,219	+				+1.3
3,780,219	+				+0.1
3,780,219	+				-0.3
3,780,219	+				+0.6
3,780,219	+				+1.2
3,780,219	+				-0.8
3,780,219	+				-0.4
3,780,219	+				-0.0
3,780,219	+				-1.0
3,780,219	+				-1.0
3,780,219	+				+1.1
3,780,220	-				-0.4
3,780,220	-				+0.3
3,780,220	-				-0.5
3,780,220	-				-0.4
3,780,220	-				+0.0
3,780,220	-				+0.2
3,780,220	-				-0.1
3,780,445	+		LRK54_RS17300	0.25	+0.1
3,780,445	+		LRK54_RS17300	0.25	-0.4
3,780,445	+		LRK54_RS17300	0.25	+1.0
3,780,445	+		LRK54_RS17300	0.25	-0.1
3,780,445	+		LRK54_RS17300	0.25	-0.3
3,780,445	+		LRK54_RS17300	0.25	-1.0
3,780,445	+		LRK54_RS17300	0.25	-1.0
3,780,445	+		LRK54_RS17300	0.25	-0.3
3,780,445	+		LRK54_RS17300	0.25	-1.0
3,780,445	+		LRK54_RS17300	0.25	+0.1
3,780,445	+		LRK54_RS17300	0.25	-0.1
3,780,445	+		LRK54_RS17300	0.25	-0.6
3,780,445	+		LRK54_RS17300	0.25	+0.5
3,780,446	-		LRK54_RS17300	0.25	+0.1
3,780,446	-		LRK54_RS17300	0.25	+0.3
3,780,446	-		LRK54_RS17300	0.25	+0.2
3,780,446	-		LRK54_RS17300	0.25	-2.1
3,780,446	-		LRK54_RS17300	0.25	-0.1
3,780,446	-		LRK54_RS17300	0.25	-0.0
3,780,446	-		LRK54_RS17300	0.25	-0.3
3,780,446	-		LRK54_RS17300	0.25	-0.1
3,780,446	-		LRK54_RS17300	0.25	+1.3
3,780,446	-		LRK54_RS17300	0.25	+0.8
3,780,446	-		LRK54_RS17300	0.25	-0.8
3,780,446	-		LRK54_RS17300	0.25	+0.2
3,780,446	-		LRK54_RS17300	0.25	-1.5
3,780,446	-		LRK54_RS17300	0.25	+0.5
3,780,446	-		LRK54_RS17300	0.25	+0.9
3,780,446	-		LRK54_RS17300	0.25	+0.2
3,780,446	-		LRK54_RS17300	0.25	-1.2
3,780,502	+		LRK54_RS17300	0.31	+0.6
3,780,944	-		LRK54_RS17300	0.78	+0.2
3,781,077	+				+0.4
3,781,116	+				-0.5
3,781,116	+				-1.5
3,781,117	-				+0.8
3,781,117	-				-1.2
3,781,117	-				-1.5
3,781,117	-				-0.7
3,781,175	+				+0.2
3,781,175	+				+1.2
3,781,175	+				-2.0
3,781,176	-				-0.1
3,781,176	-				+1.7
3,781,176	-				-1.1
3,781,176	-				+1.3
3,781,198	-				-1.6
3,781,198	-				-0.7