Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17205

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,759,136	+		LRK54_RS17195	0.61	-0.1
3,759,136	+		LRK54_RS17195	0.61	+0.4
3,759,137	-		LRK54_RS17195	0.61	+0.2
3,759,137	-		LRK54_RS17195	0.61	-1.2
3,759,137	-		LRK54_RS17195	0.61	+1.0
3,759,137	-		LRK54_RS17195	0.61	-1.0
3,759,137	-		LRK54_RS17195	0.61	+0.5
3,759,277	+		LRK54_RS17195	0.68	+1.1
3,759,277	+		LRK54_RS17195	0.68	-0.7
3,759,277	+		LRK54_RS17195	0.68	+0.4
3,759,277	+		LRK54_RS17195	0.68	-0.9
3,759,277	+		LRK54_RS17195	0.68	-0.7
3,759,277	+		LRK54_RS17195	0.68	+0.1
3,759,277	+		LRK54_RS17195	0.68	-0.6
3,759,277	+		LRK54_RS17195	0.68	+1.7
3,759,278	-		LRK54_RS17195	0.68	+0.9
3,759,278	-		LRK54_RS17195	0.68	+0.8
3,759,278	-		LRK54_RS17195	0.68	+1.3
3,759,278	-		LRK54_RS17195	0.68	-0.2
3,759,278	-		LRK54_RS17195	0.68	-2.0
3,759,385	+		LRK54_RS17195	0.74	+0.6
3,759,385	+		LRK54_RS17195	0.74	+0.3
3,759,385	+		LRK54_RS17195	0.74	+0.5
3,759,386	-		LRK54_RS17195	0.74	+1.9
3,759,386	-		LRK54_RS17195	0.74	+0.2
3,759,386	-		LRK54_RS17195	0.74	+1.0
3,759,386	-		LRK54_RS17195	0.74	-0.8
3,759,436	+		LRK54_RS17195	0.76	-0.2
3,759,895	+				+0.5
3,759,895	+				+0.6
3,759,895	+				-0.0
3,759,896	-				+0.3
3,759,896	-				+0.2
3,759,896	-				-0.9
3,759,896	-				+0.2
3,759,917	+				-0.4
3,759,917	+				-1.5
3,760,054	+		LRK54_RS17200	0.71	-0.5
3,760,197	+				+2.3
3,760,197	+				-1.5
3,760,198	-				-0.6
3,760,288	+				-1.0
3,760,288	+				+0.2
3,760,288	+				-1.3
3,760,289	-				-2.1
3,760,289	-				-0.3
3,760,289	-				+0.6
3,760,289	-				-0.5
3,760,289	-				-0.7
3,760,864	-		LRK54_RS17205	0.33	-0.1
3,761,059	+		LRK54_RS17205	0.42	-0.5
3,761,059	+		LRK54_RS17205	0.42	-1.6
3,761,060	-		LRK54_RS17205	0.42	+2.3
3,761,701	+		LRK54_RS17205	0.70	+0.5
3,761,749	+		LRK54_RS17205	0.73	-0.7
3,761,749	+		LRK54_RS17205	0.73	-1.8
3,761,749	+		LRK54_RS17205	0.73	-0.4
3,761,750	-		LRK54_RS17205	0.73	+0.9
3,761,750	-		LRK54_RS17205	0.73	-0.8
3,761,750	-		LRK54_RS17205	0.73	-2.0
3,761,750	-		LRK54_RS17205	0.73	-0.3
3,761,750	-		LRK54_RS17205	0.73	-0.3
3,761,750	-		LRK54_RS17205	0.73	-0.3
3,761,890	+		LRK54_RS17205	0.79	-2.1
3,761,890	+		LRK54_RS17205	0.79	-2.2
3,761,890	+		LRK54_RS17205	0.79	+0.8
3,761,890	+		LRK54_RS17205	0.79	-1.5
3,761,891	-		LRK54_RS17205	0.79	-0.8
3,761,891	-		LRK54_RS17205	0.79	+0.3
3,761,891	-		LRK54_RS17205	0.79	+2.3
3,761,891	-		LRK54_RS17205	0.79	+0.0
3,761,977	+		LRK54_RS17205	0.83	-0.5
3,761,977	+		LRK54_RS17205	0.83	+0.1
3,761,977	+		LRK54_RS17205	0.83	+0.5
3,761,977	+		LRK54_RS17205	0.83	+0.9
3,761,977	+		LRK54_RS17205	0.83	-1.2
3,761,977	+		LRK54_RS17205	0.83	+0.9
3,761,978	-		LRK54_RS17205	0.83	-0.2
3,761,978	-		LRK54_RS17205	0.83	+1.7
3,761,992	+		LRK54_RS17205	0.83	-0.7
3,761,992	+		LRK54_RS17205	0.83	-1.2
3,761,992	+		LRK54_RS17205	0.83	+0.2
3,761,992	+		LRK54_RS17205	0.83	-1.1
3,761,992	+		LRK54_RS17205	0.83	-1.8
3,761,992	+		LRK54_RS17205	0.83	-0.7
3,761,992	+		LRK54_RS17205	0.83	+1.0
3,761,992	+		LRK54_RS17205	0.83	+1.0
3,761,992	+		LRK54_RS17205	0.83	-1.1
3,761,992	+		LRK54_RS17205	0.83	-1.2
3,761,992	+		LRK54_RS17205	0.83	-1.0
3,761,993	-		LRK54_RS17205	0.83	-0.1
3,761,993	-		LRK54_RS17205	0.83	-1.6
3,761,993	-		LRK54_RS17205	0.83	-0.6
3,761,993	-		LRK54_RS17205	0.83	-0.8
3,762,137	+		LRK54_RS17205	0.90	-1.2
3,762,358	+				-2.2
3,762,359	-				-0.7
3,762,359	-				-0.1
3,762,454	+		LRK54_RS17210	0.37	+1.3
3,762,454	+		LRK54_RS17210	0.37	-0.7
3,762,454	+		LRK54_RS17210	0.37	-1.2
3,762,454	+		LRK54_RS17210	0.37	+0.3
3,762,455	-		LRK54_RS17210	0.37	+1.0
3,762,455	-		LRK54_RS17210	0.37	+0.1
3,762,455	-		LRK54_RS17210	0.37	-1.4
3,762,455	-		LRK54_RS17210	0.37	-0.5
3,762,521	+		LRK54_RS17210	0.64	-1.1
3,762,521	+		LRK54_RS17210	0.64	+0.3
3,762,521	+		LRK54_RS17210	0.64	+0.0
3,762,522	-		LRK54_RS17210	0.65	-0.5
3,762,522	-		LRK54_RS17210	0.65	-0.5
3,762,628	+				+0.3
3,762,628	+				-1.2
3,762,628	+				-0.7
3,762,628	+				+0.8
3,762,629	-				-1.6
3,762,629	-				+0.5
3,762,629	-				+0.5
3,762,629	-				-0.4
3,762,634	+				-0.1
3,762,634	+				-1.2
3,762,634	+				+2.3
3,762,635	-				-0.9
3,762,635	-				-1.6
3,762,635	-				+0.8
3,762,895	+		LRK54_RS17215	0.33	-1.6
3,762,895	+		LRK54_RS17215	0.33	-1.6
3,762,895	+		LRK54_RS17215	0.33	-0.8
3,762,895	+		LRK54_RS17215	0.33	+0.0
3,762,895	+		LRK54_RS17215	0.33	+0.0
3,762,896	-		LRK54_RS17215	0.34	-0.1
3,762,896	-		LRK54_RS17215	0.34	+1.6
3,762,896	-		LRK54_RS17215	0.34	-1.1
3,763,003	+		LRK54_RS17215	0.45	-2.2
3,763,003	+		LRK54_RS17215	0.45	-2.3
3,763,098	+		LRK54_RS17215	0.56	-0.1
3,763,098	+		LRK54_RS17215	0.56	+0.6
3,763,098	+		LRK54_RS17215	0.56	-0.9
3,763,099	-		LRK54_RS17215	0.56	-1.1
3,763,099	-		LRK54_RS17215	0.56	-0.7
3,763,099	-		LRK54_RS17215	0.56	-0.4
3,763,150	+		LRK54_RS17215	0.61	-1.6
3,763,150	+		LRK54_RS17215	0.61	-0.8
3,763,150	+		LRK54_RS17215	0.61	-2.0
3,763,239	+		LRK54_RS17215	0.71	-1.2
3,763,240	-		LRK54_RS17215	0.71	+1.3
3,763,279	+		LRK54_RS17215	0.76	-1.7
3,763,279	+		LRK54_RS17215	0.76	+0.6
3,763,279	+		LRK54_RS17215	0.76	-0.2