Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17175

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,751,557	+		LRK54_RS17170	0.41	-0.9
3,751,557	+		LRK54_RS17170	0.41	+0.3
3,751,557	+		LRK54_RS17170	0.41	+0.4
3,751,557	+		LRK54_RS17170	0.41	+0.1
3,751,557	+		LRK54_RS17170	0.41	-0.0
3,751,557	+		LRK54_RS17170	0.41	+0.9
3,751,558	-		LRK54_RS17170	0.41	+2.7
3,751,702	+		LRK54_RS17170	0.51	-0.1
3,751,702	+		LRK54_RS17170	0.51	-0.4
3,751,702	+		LRK54_RS17170	0.51	-0.3
3,751,702	+		LRK54_RS17170	0.51	+0.1
3,751,702	+		LRK54_RS17170	0.51	+1.0
3,751,702	+		LRK54_RS17170	0.51	+0.2
3,751,702	+		LRK54_RS17170	0.51	+1.5
3,751,702	+		LRK54_RS17170	0.51	+0.7
3,751,702	+		LRK54_RS17170	0.51	-0.8
3,751,702	+		LRK54_RS17170	0.51	-1.2
3,751,702	+		LRK54_RS17170	0.51	+0.3
3,751,702	+		LRK54_RS17170	0.51	-0.5
3,751,703	-		LRK54_RS17170	0.51	+1.8
3,751,703	-		LRK54_RS17170	0.51	-0.6
3,751,703	-		LRK54_RS17170	0.51	-1.3
3,751,703	-		LRK54_RS17170	0.51	+0.3
3,751,703	-		LRK54_RS17170	0.51	+0.9
3,751,821	+		LRK54_RS17170	0.59	+1.3
3,751,821	+		LRK54_RS17170	0.59	+1.7
3,751,821	+		LRK54_RS17170	0.59	+0.0
3,751,821	+		LRK54_RS17170	0.59	-0.5
3,751,821	+		LRK54_RS17170	0.59	-0.1
3,751,821	+		LRK54_RS17170	0.59	-2.3
3,751,821	+		LRK54_RS17170	0.59	+0.1
3,751,821	+		LRK54_RS17170	0.59	+0.4
3,751,821	+		LRK54_RS17170	0.59	+0.1
3,751,821	+		LRK54_RS17170	0.59	+1.2
3,751,821	+		LRK54_RS17170	0.59	-0.7
3,751,821	+		LRK54_RS17170	0.59	-0.2
3,751,821	+		LRK54_RS17170	0.59	+0.9
3,751,821	+		LRK54_RS17170	0.59	+0.7
3,751,821	+		LRK54_RS17170	0.59	-0.3
3,751,821	+		LRK54_RS17170	0.59	+0.6
3,751,821	+		LRK54_RS17170	0.59	+1.7
3,751,821	+		LRK54_RS17170	0.59	+0.9
3,751,821	+		LRK54_RS17170	0.59	-0.3
3,751,821	+		LRK54_RS17170	0.59	+0.6
3,751,822	-		LRK54_RS17170	0.59	+1.5
3,751,822	-		LRK54_RS17170	0.59	+1.5
3,751,822	-		LRK54_RS17170	0.59	+0.6
3,751,822	-		LRK54_RS17170	0.59	+1.5
3,751,822	-		LRK54_RS17170	0.59	-0.6
3,751,822	-		LRK54_RS17170	0.59	-1.4
3,751,822	-		LRK54_RS17170	0.59	+0.3
3,751,822	-		LRK54_RS17170	0.59	+1.8
3,751,822	-		LRK54_RS17170	0.59	+0.5
3,751,822	-		LRK54_RS17170	0.59	+0.7
3,751,822	-		LRK54_RS17170	0.59	+0.0
3,751,822	-		LRK54_RS17170	0.59	-0.6
3,751,822	-		LRK54_RS17170	0.59	+0.3
3,751,822	-		LRK54_RS17170	0.59	-0.5
3,751,822	-		LRK54_RS17170	0.59	+0.2
3,751,822	-		LRK54_RS17170	0.59	+0.1
3,751,822	-		LRK54_RS17170	0.59	-0.4
3,751,839	+		LRK54_RS17170	0.60	-0.0
3,751,839	+		LRK54_RS17170	0.60	-1.0
3,751,839	+		LRK54_RS17170	0.60	+1.7
3,751,839	+		LRK54_RS17170	0.60	-0.3
3,751,839	+		LRK54_RS17170	0.60	+0.3
3,751,839	+		LRK54_RS17170	0.60	+0.7
3,751,839	+		LRK54_RS17170	0.60	-0.4
3,751,839	+		LRK54_RS17170	0.60	+0.1
3,751,839	+		LRK54_RS17170	0.60	-0.3
3,751,839	+		LRK54_RS17170	0.60	+2.3
3,751,839	+		LRK54_RS17170	0.60	-0.1
3,751,839	+		LRK54_RS17170	0.60	+1.3
3,751,839	+		LRK54_RS17170	0.60	-0.7
3,751,839	+		LRK54_RS17170	0.60	+1.0
3,751,839	+		LRK54_RS17170	0.60	-0.3
3,751,840	-		LRK54_RS17170	0.61	+0.4
3,751,840	-		LRK54_RS17170	0.61	-0.3
3,751,840	-		LRK54_RS17170	0.61	+0.5
3,751,840	-		LRK54_RS17170	0.61	+0.2
3,751,840	-		LRK54_RS17170	0.61	-0.7
3,751,840	-		LRK54_RS17170	0.61	-1.1
3,751,840	-		LRK54_RS17170	0.61	+0.2
3,751,840	-		LRK54_RS17170	0.61	+0.5
3,751,840	-		LRK54_RS17170	0.61	+0.7
3,751,840	-		LRK54_RS17170	0.61	-0.3
3,751,840	-		LRK54_RS17170	0.61	-1.1
3,751,917	+		LRK54_RS17170	0.66	-0.2
3,751,917	+		LRK54_RS17170	0.66	+0.7
3,751,917	+		LRK54_RS17170	0.66	+0.3
3,751,917	+		LRK54_RS17170	0.66	+0.1
3,751,917	+		LRK54_RS17170	0.66	-0.1
3,751,917	+		LRK54_RS17170	0.66	-0.9
3,751,917	+		LRK54_RS17170	0.66	+0.8
3,751,917	+		LRK54_RS17170	0.66	+0.9
3,751,917	+		LRK54_RS17170	0.66	+1.3
3,751,917	+		LRK54_RS17170	0.66	-0.3
3,751,917	+		LRK54_RS17170	0.66	-0.9
3,751,917	+		LRK54_RS17170	0.66	-1.0
3,751,917	+		LRK54_RS17170	0.66	-0.1
3,751,917	+		LRK54_RS17170	0.66	+0.5
3,751,917	+		LRK54_RS17170	0.66	+1.3
3,751,917	+		LRK54_RS17170	0.66	-0.1
3,751,917	+		LRK54_RS17170	0.66	-0.0
3,751,917	+		LRK54_RS17170	0.66	-2.4
3,751,917	+		LRK54_RS17170	0.66	-0.1
3,751,918	-		LRK54_RS17170	0.66	+0.9
3,751,918	-		LRK54_RS17170	0.66	+0.2
3,751,918	-		LRK54_RS17170	0.66	+0.3
3,751,918	-		LRK54_RS17170	0.66	+0.0
3,751,918	-		LRK54_RS17170	0.66	-1.4
3,751,918	-		LRK54_RS17170	0.66	-0.3
3,751,918	-		LRK54_RS17170	0.66	-0.4
3,751,918	-		LRK54_RS17170	0.66	+1.1
3,751,918	-		LRK54_RS17170	0.66	-1.7
3,751,918	-		LRK54_RS17170	0.66	-1.0
3,751,918	-		LRK54_RS17170	0.66	+0.4
3,751,918	-		LRK54_RS17170	0.66	+0.0
3,751,918	-		LRK54_RS17170	0.66	-0.4
3,751,918	-		LRK54_RS17170	0.66	+0.5
3,751,918	-		LRK54_RS17170	0.66	-0.3
3,751,918	-		LRK54_RS17170	0.66	+1.0
3,751,918	-		LRK54_RS17170	0.66	+0.0
3,751,918	-		LRK54_RS17170	0.66	-0.1
3,751,918	-		LRK54_RS17170	0.66	-2.0
3,751,918	-		LRK54_RS17170	0.66	+1.2
3,751,918	-		LRK54_RS17170	0.66	+0.6
3,751,918	-		LRK54_RS17170	0.66	+0.9
3,751,918	-		LRK54_RS17170	0.66	+0.5
3,752,103	+		LRK54_RS17170	0.79	-0.5
3,752,103	+		LRK54_RS17170	0.79	+0.7
3,752,103	+		LRK54_RS17170	0.79	+0.0
3,752,103	+		LRK54_RS17170	0.79	+0.6
3,752,103	+		LRK54_RS17170	0.79	-0.2
3,752,103	+		LRK54_RS17170	0.79	-0.1
3,752,103	+		LRK54_RS17170	0.79	-0.9
3,752,103	+		LRK54_RS17170	0.79	+0.6
3,752,103	+		LRK54_RS17170	0.79	+1.1
3,752,103	+		LRK54_RS17170	0.79	-1.3
3,752,103	+		LRK54_RS17170	0.79	+1.1
3,752,103	+		LRK54_RS17170	0.79	-1.1
3,752,103	+		LRK54_RS17170	0.79	+0.3
3,752,103	+		LRK54_RS17170	0.79	+0.8
3,752,103	+		LRK54_RS17170	0.79	+0.6
3,752,104	-		LRK54_RS17170	0.79	-0.7
3,752,104	-		LRK54_RS17170	0.79	+3.3
3,752,104	-		LRK54_RS17170	0.79	+1.3
3,752,104	-		LRK54_RS17170	0.79	-0.8
3,752,104	-		LRK54_RS17170	0.79	+0.3
3,752,104	-		LRK54_RS17170	0.79	-0.3
3,752,104	-		LRK54_RS17170	0.79	-0.3
3,752,104	-		LRK54_RS17170	0.79	+0.7
3,752,104	-		LRK54_RS17170	0.79	+3.3
3,752,145	-		LRK54_RS17170	0.82	-0.3
3,752,271	+				+0.3
3,752,271	+				+0.6
3,752,271	+				+0.3
3,752,271	+				-0.1
3,752,271	+				+0.2
3,752,271	+				+1.6
3,752,271	+				+0.5
3,752,271	+				-0.1
3,752,272	-				+1.7
3,752,272	-				+0.5
3,752,272	-				-0.5
3,752,272	-				+0.6
3,752,272	-				-1.6
3,752,272	-				-0.7
3,752,272	-				+0.2
3,752,272	-				+0.7
3,752,272	-				+2.6
3,752,272	-				-0.7
3,752,272	-				+1.2
3,752,355	+				+0.4
3,752,355	+				+0.6
3,752,355	+				-0.1
3,752,355	+				+0.4
3,752,355	+				-0.3
3,752,356	-				-0.3
3,752,356	-				-0.1
3,752,356	-				+1.2
3,752,356	-				+1.1
3,752,356	-				-0.7
3,752,356	-				+0.4
3,752,356	-				-0.7
3,752,477	+				+1.0
3,752,477	+				-0.7
3,752,477	+				+1.7
3,752,477	+				-0.2
3,752,477	+				-1.3
3,752,478	-				+1.3
3,752,478	-				-0.8
3,752,478	-				+1.5
3,752,794	-		LRK54_RS17175	0.36	+0.6
3,752,823	+		LRK54_RS17175	0.40	-0.5
3,752,824	-		LRK54_RS17175	0.40	+0.4
3,752,824	-		LRK54_RS17175	0.40	+0.1
3,752,824	-		LRK54_RS17175	0.40	-0.1
3,752,913	+		LRK54_RS17175	0.52	+1.6
3,752,913	+		LRK54_RS17175	0.52	+0.7
3,752,914	-		LRK54_RS17175	0.52	+0.2
3,752,914	-		LRK54_RS17175	0.52	+0.5
3,752,914	-		LRK54_RS17175	0.52	+0.1
3,752,914	-		LRK54_RS17175	0.52	-0.5
3,752,981	+		LRK54_RS17175	0.61	+0.2
3,752,981	+		LRK54_RS17175	0.61	+0.3
3,752,981	+		LRK54_RS17175	0.61	+0.0
3,752,981	+		LRK54_RS17175	0.61	+0.2
3,752,981	+		LRK54_RS17175	0.61	-1.1
3,752,981	+		LRK54_RS17175	0.61	+0.1
3,752,981	+		LRK54_RS17175	0.61	+0.5
3,752,981	+		LRK54_RS17175	0.61	+1.1
3,752,981	+		LRK54_RS17175	0.61	+0.2
3,752,981	+		LRK54_RS17175	0.61	-0.1
3,752,981	+		LRK54_RS17175	0.61	+1.2
3,752,981	+		LRK54_RS17175	0.61	+1.3
3,752,981	+		LRK54_RS17175	0.61	-0.4
3,752,981	+		LRK54_RS17175	0.61	-1.5
3,752,982	-		LRK54_RS17175	0.61	+1.8
3,752,982	-		LRK54_RS17175	0.61	+0.7
3,752,982	-		LRK54_RS17175	0.61	-0.1
3,752,982	-		LRK54_RS17175	0.61	-0.8
3,752,982	-		LRK54_RS17175	0.61	+0.8
3,752,982	-		LRK54_RS17175	0.61	+1.7
3,752,982	-		LRK54_RS17175	0.61	+0.3
3,752,982	-		LRK54_RS17175	0.61	+0.2
3,752,982	-		LRK54_RS17175	0.61	+1.0
3,752,982	-		LRK54_RS17175	0.61	+0.9
3,752,982	-		LRK54_RS17175	0.61	-0.3
3,752,982	-		LRK54_RS17175	0.61	-0.2
3,752,982	-		LRK54_RS17175	0.61	+1.3
3,752,982	-		LRK54_RS17175	0.61	-0.3
3,752,982	-		LRK54_RS17175	0.61	-0.9
3,752,982	-		LRK54_RS17175	0.61	+2.3
3,752,982	-		LRK54_RS17175	0.61	+0.1
3,752,982	-		LRK54_RS17175	0.61	+0.0
3,753,024	+		LRK54_RS17175	0.67	+0.3
3,753,024	+		LRK54_RS17175	0.67	-0.3
3,753,024	+		LRK54_RS17175	0.67	+0.0
3,753,024	+		LRK54_RS17175	0.67	+0.3
3,753,025	-		LRK54_RS17175	0.67	-1.4
3,753,025	-		LRK54_RS17175	0.67	+2.3
3,753,025	-		LRK54_RS17175	0.67	+0.2
3,753,025	-		LRK54_RS17175	0.67	-0.3
3,753,025	-		LRK54_RS17175	0.67	+0.0
3,753,025	-		LRK54_RS17175	0.67	+0.2
3,753,025	-		LRK54_RS17175	0.67	+0.7
3,753,025	-		LRK54_RS17175	0.67	-0.7
3,753,025	-		LRK54_RS17175	0.67	-0.9
3,753,025	-		LRK54_RS17175	0.67	+0.9
3,753,084	+		LRK54_RS17175	0.74	+0.2
3,753,084	+		LRK54_RS17175	0.74	+0.1
3,753,084	+		LRK54_RS17175	0.74	+0.3
3,753,084	+		LRK54_RS17175	0.74	-0.7
3,753,084	+		LRK54_RS17175	0.74	+1.2
3,753,084	+		LRK54_RS17175	0.74	-3.0
3,753,084	+		LRK54_RS17175	0.74	+0.2
3,753,084	+		LRK54_RS17175	0.74	+0.0
3,753,085	-		LRK54_RS17175	0.75	+0.9
3,753,085	-		LRK54_RS17175	0.75	+0.2
3,753,085	-		LRK54_RS17175	0.75	-0.7
3,753,085	-		LRK54_RS17175	0.75	-0.9
3,753,085	-		LRK54_RS17175	0.75	-0.3
3,753,085	-		LRK54_RS17175	0.75	-0.5
3,753,085	-		LRK54_RS17175	0.75	+0.8
3,753,085	-		LRK54_RS17175	0.75	+1.3
3,753,085	-		LRK54_RS17175	0.75	+0.1
3,753,085	-		LRK54_RS17175	0.75	-0.4
3,753,085	-		LRK54_RS17175	0.75	-0.2
3,753,085	-		LRK54_RS17175	0.75	+1.7
3,753,165	+		LRK54_RS17175	0.85	+0.4
3,753,165	+		LRK54_RS17175	0.85	+1.2
3,753,165	+		LRK54_RS17175	0.85	-0.5
3,753,165	+		LRK54_RS17175	0.85	-0.3
3,753,166	-		LRK54_RS17175	0.85	-2.4
3,753,166	-		LRK54_RS17175	0.85	+0.9
3,753,166	-		LRK54_RS17175	0.85	+1.3
3,753,166	-		LRK54_RS17175	0.85	+0.0
3,753,166	-		LRK54_RS17175	0.85	-0.0
3,753,166	-		LRK54_RS17175	0.85	+0.0
3,753,166	-		LRK54_RS17175	0.85	-0.3
3,753,166	-		LRK54_RS17175	0.85	+0.5
3,753,201	+		LRK54_RS17175	0.90	-0.5
3,753,219	+				+1.2
3,753,220	-				-1.3
3,753,228	+				-0.7
3,753,229	-				+1.0
3,753,229	-				+0.3
3,753,229	-				-0.2
3,753,229	-				+1.0
3,753,229	-				+0.1
3,753,229	-				-1.1
3,753,229	-				+0.5
3,753,277	-				+0.3
3,753,277	-				+1.1
3,753,345	+				+0.4
3,753,345	+				+0.8
3,753,345	+				+2.3
3,753,345	+				+0.0
3,753,345	+				+0.2
3,753,345	+				+0.7
3,753,345	+				-0.3
3,753,346	-				+0.2
3,753,437	+				+0.8
3,753,482	+				+0.5
3,753,926	+		LRK54_RS17180	0.38	+0.5
3,753,926	+		LRK54_RS17180	0.38	+2.3
3,753,926	+		LRK54_RS17180	0.38	-0.2
3,753,926	+		LRK54_RS17180	0.38	+0.1
3,753,926	+		LRK54_RS17180	0.38	+0.7
3,753,926	+		LRK54_RS17180	0.38	+0.3
3,753,926	+		LRK54_RS17180	0.38	+0.5
3,753,926	+		LRK54_RS17180	0.38	+0.0
3,753,926	+		LRK54_RS17180	0.38	+0.3
3,753,926	+		LRK54_RS17180	0.38	-1.1
3,753,926	+		LRK54_RS17180	0.38	+0.5
3,753,926	+		LRK54_RS17180	0.38	+1.4
3,753,926	+		LRK54_RS17180	0.38	-0.5
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