Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17165

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,746,650	+		LRK54_RS17160	0.64	+0.3
3,746,793	+		LRK54_RS17160	0.72	+0.2
3,747,234	-				-0.3
3,747,234	-				+0.1
3,747,234	-				+1.5
3,747,234	-				+0.4
3,747,234	-				-0.6
3,747,357	-				-0.6
3,747,357	-				+1.6
3,747,409	+				+0.7
3,747,410	-				-0.2
3,747,410	-				-0.4
3,747,410	-				+0.3
3,747,492	+				+0.3
3,747,492	+				+0.2
3,747,492	+				-0.7
3,747,492	+				-0.8
3,747,492	+				-0.3
3,747,492	+				+1.1
3,747,492	+				-0.1
3,747,492	+				-0.1
3,747,492	+				-1.4
3,747,492	+				-0.3
3,747,492	+				-0.5
3,747,492	+				+0.3
3,747,492	+				+1.5
3,747,492	+				-0.5
3,747,492	+				-0.7
3,747,492	+				-0.3
3,747,492	+				-1.0
3,747,492	+				+0.4
3,747,492	+				-0.3
3,747,492	+				-0.1
3,747,492	+				-1.4
3,747,492	+				-1.7
3,747,492	+				+0.0
3,747,492	+				-0.5
3,747,492	+				+1.3
3,747,492	+				+1.2
3,747,492	+				-1.8
3,747,492	+				-1.0
3,747,492	+				-0.1
3,747,492	+				+0.0
3,747,492	+				-0.5
3,747,493	-				-1.7
3,747,493	-				-1.1
3,747,493	-				+1.0
3,747,493	-				+0.2
3,747,493	-				-1.1
3,747,493	-				+0.1
3,747,493	-				+1.3
3,747,493	-				-0.5
3,747,493	-				+1.7
3,747,493	-				-1.0
3,747,493	-				+0.3
3,747,493	-				+0.7
3,747,493	-				+0.1
3,747,493	-				+0.0
3,747,493	-				-1.7
3,747,493	-				-2.5
3,747,493	-				-1.5
3,747,493	-				-1.0
3,747,493	-				+0.0
3,747,493	-				-0.8
3,747,493	-				-0.9
3,747,493	-				-0.7
3,747,493	-				-1.8
3,747,493	-				-0.5
3,747,493	-				-2.1
3,747,493	-				-2.4
3,747,493	-				+0.2
3,747,493	-				-1.0
3,747,493	-				-0.1
3,747,495	+				+0.5
3,747,495	+				-1.4
3,747,495	+				-0.3
3,747,495	+				+0.1
3,747,495	+				-2.3
3,747,495	+				-1.3
3,747,495	+				-0.8
3,747,495	+				-0.7
3,747,495	+				-0.8
3,747,495	+				-0.4
3,747,495	+				-1.1
3,747,495	+				+1.7
3,747,495	+				-0.8
3,747,495	+				+0.5
3,747,495	+				-0.1
3,747,495	+				-1.6
3,747,495	+				-1.0
3,747,495	+				-1.0
3,747,496	-				-1.0
3,747,496	-				-1.3
3,747,496	-				+0.3
3,747,496	-				+1.0
3,747,496	-				+1.9
3,747,496	-				-0.3
3,747,496	-				-1.4
3,747,496	-				-0.3
3,747,496	-				-2.5
3,747,496	-				+1.6
3,747,496	-				-2.1
3,747,496	-				-1.1
3,747,496	-				+0.5
3,747,496	-				-1.3
3,747,496	-				-0.1
3,747,496	-				+0.2
3,747,496	-				-0.3
3,747,496	-				+0.3
3,747,496	-				-1.8
3,747,496	-				-0.3
3,747,496	-				-1.5
3,747,496	-				-0.3
3,747,496	-				-0.2
3,747,496	-				-1.6
3,747,496	-				-2.0
3,747,496	-				-1.0
3,747,496	-				+1.6
3,747,496	-				-0.9
3,747,496	-				+2.1
3,747,618	+				-0.5
3,747,618	+				-0.7
3,747,618	+				-0.6
3,747,618	+				-0.6
3,747,618	+				+1.5
3,747,618	+				+0.8
3,747,618	+				-1.3
3,747,618	+				+0.2
3,747,618	+				-1.5
3,747,618	+				-0.3
3,747,618	+				-1.1
3,747,619	-				+0.6
3,747,619	-				+0.0
3,747,619	-				-0.9
3,747,619	-				+0.6
3,747,619	-				-0.9
3,747,619	-				-1.1
3,747,619	-				-0.7
3,747,619	-				-0.2
3,747,675	+				-0.5
3,747,675	+				+0.9
3,747,675	+				-0.9
3,747,675	+				-0.3
3,747,675	+				-0.3
3,747,675	+				+0.3
3,747,675	+				+0.2
3,747,676	-				+0.5
3,747,676	-				+0.0
3,747,676	-				-0.1
3,747,676	-				+0.7
3,747,676	-				+0.1
3,747,676	-				+0.3
3,747,676	-				-0.2
3,747,676	-				-2.4
3,747,676	-				-1.3
3,747,676	-				-0.4
3,747,849	+		LRK54_RS17165	0.14	+0.4
3,747,849	+		LRK54_RS17165	0.14	-0.6
3,747,850	-		LRK54_RS17165	0.14	-0.9
3,747,850	-		LRK54_RS17165	0.14	-0.4
3,747,850	-		LRK54_RS17165	0.14	-0.6
3,747,850	-		LRK54_RS17165	0.14	+0.7
3,747,939	+		LRK54_RS17165	0.16	+0.2
3,748,113	+		LRK54_RS17165	0.21	+0.1
3,748,113	+		LRK54_RS17165	0.21	-0.8
3,748,113	+		LRK54_RS17165	0.21	-0.5
3,748,113	+		LRK54_RS17165	0.21	-0.3
3,748,113	+		LRK54_RS17165	0.21	+0.7
3,748,113	+		LRK54_RS17165	0.21	-0.7
3,748,113	+		LRK54_RS17165	0.21	+0.0
3,748,113	+		LRK54_RS17165	0.21	+1.3
3,748,113	+		LRK54_RS17165	0.21	-0.7
3,748,113	+		LRK54_RS17165	0.21	-2.1
3,748,113	+		LRK54_RS17165	0.21	-0.5
3,748,113	+		LRK54_RS17165	0.21	-0.5
3,748,113	+		LRK54_RS17165	0.21	-2.9
3,748,114	-		LRK54_RS17165	0.21	+0.7
3,748,114	-		LRK54_RS17165	0.21	-1.3
3,748,114	-		LRK54_RS17165	0.21	-0.8
3,748,114	-		LRK54_RS17165	0.21	-0.5
3,748,114	-		LRK54_RS17165	0.21	-0.6
3,748,114	-		LRK54_RS17165	0.21	+0.2
3,748,114	-		LRK54_RS17165	0.21	-1.4
3,748,114	-		LRK54_RS17165	0.21	-1.1
3,748,114	-		LRK54_RS17165	0.21	+2.3
3,748,114	-		LRK54_RS17165	0.21	-3.4
3,748,114	-		LRK54_RS17165	0.21	-3.0
3,748,114	-		LRK54_RS17165	0.21	+1.3
3,748,114	-		LRK54_RS17165	0.21	-1.2
3,748,114	-		LRK54_RS17165	0.21	-1.4
3,748,189	+		LRK54_RS17165	0.23	-0.2
3,748,189	+		LRK54_RS17165	0.23	+0.5
3,748,189	+		LRK54_RS17165	0.23	+1.0
3,748,190	-		LRK54_RS17165	0.23	-1.5
3,748,190	-		LRK54_RS17165	0.23	+0.4
3,748,190	-		LRK54_RS17165	0.23	+0.0
3,748,359	+		LRK54_RS17165	0.28	+0.7
3,748,359	+		LRK54_RS17165	0.28	+0.2
3,748,359	+		LRK54_RS17165	0.28	+0.0
3,748,359	+		LRK54_RS17165	0.28	+0.0
3,748,360	-		LRK54_RS17165	0.28	+1.3
3,748,360	-		LRK54_RS17165	0.28	-0.2
3,748,360	-		LRK54_RS17165	0.28	-2.1
3,748,360	-		LRK54_RS17165	0.28	-1.9
3,748,431	+		LRK54_RS17165	0.31	+1.3
3,748,485	+		LRK54_RS17165	0.32	+0.7
3,748,485	+		LRK54_RS17165	0.32	+1.1
3,748,485	+		LRK54_RS17165	0.32	-0.0
3,748,485	+		LRK54_RS17165	0.32	+0.0
3,748,485	+		LRK54_RS17165	0.32	+0.7
3,748,486	-		LRK54_RS17165	0.32	-0.5
3,748,486	-		LRK54_RS17165	0.32	-0.4
3,748,486	-		LRK54_RS17165	0.32	+0.1
3,748,486	-		LRK54_RS17165	0.32	-0.7
3,748,486	-		LRK54_RS17165	0.32	+0.6
3,748,586	+		LRK54_RS17165	0.35	+0.2
3,748,586	+		LRK54_RS17165	0.35	+1.1
3,748,586	+		LRK54_RS17165	0.35	-0.1
3,748,586	+		LRK54_RS17165	0.35	-1.3
3,748,586	+		LRK54_RS17165	0.35	-0.3
3,748,586	+		LRK54_RS17165	0.35	-0.6
3,748,587	-		LRK54_RS17165	0.35	+0.7
3,748,587	-		LRK54_RS17165	0.35	-0.3
3,748,587	-		LRK54_RS17165	0.35	-1.8
3,748,587	-		LRK54_RS17165	0.35	-0.7
3,748,587	-		LRK54_RS17165	0.35	+0.4
3,748,587	-		LRK54_RS17165	0.35	+0.3
3,748,770	+		LRK54_RS17165	0.40	-1.3
3,748,771	-		LRK54_RS17165	0.40	-0.8
3,748,974	+		LRK54_RS17165	0.46	+0.3
3,748,974	+		LRK54_RS17165	0.46	+1.5
3,748,974	+		LRK54_RS17165	0.46	+1.3
3,748,974	+		LRK54_RS17165	0.46	+0.5
3,748,974	+		LRK54_RS17165	0.46	+0.3
3,748,974	+		LRK54_RS17165	0.46	+0.1
3,748,974	+		LRK54_RS17165	0.46	+0.2
3,748,974	+		LRK54_RS17165	0.46	+0.3
3,748,974	+		LRK54_RS17165	0.46	-1.2
3,748,974	+		LRK54_RS17165	0.46	+0.8
3,748,974	+		LRK54_RS17165	0.46	+1.3
3,748,974	+		LRK54_RS17165	0.46	-0.3
3,748,974	+		LRK54_RS17165	0.46	+0.1
3,748,974	+		LRK54_RS17165	0.46	-0.3
3,748,974	+		LRK54_RS17165	0.46	+1.9
3,748,974	+		LRK54_RS17165	0.46	+0.0
3,748,974	+		LRK54_RS17165	0.46	-1.5
3,748,974	+		LRK54_RS17165	0.46	+0.5
3,748,974	+		LRK54_RS17165	0.46	-0.3
3,748,975	-		LRK54_RS17165	0.46	+0.0
3,748,975	-		LRK54_RS17165	0.46	+0.0
3,748,975	-		LRK54_RS17165	0.46	-0.4
3,748,975	-		LRK54_RS17165	0.46	+0.2
3,748,975	-		LRK54_RS17165	0.46	+1.2
3,748,975	-		LRK54_RS17165	0.46	+0.3
3,748,975	-		LRK54_RS17165	0.46	+1.3
3,748,975	-		LRK54_RS17165	0.46	+0.3
3,749,043	+		LRK54_RS17165	0.48	-0.1
3,749,043	+		LRK54_RS17165	0.48	+1.1
3,749,043	+		LRK54_RS17165	0.48	+0.2
3,749,043	+		LRK54_RS17165	0.48	+0.2
3,749,043	+		LRK54_RS17165	0.48	-0.3
3,749,043	+		LRK54_RS17165	0.48	+0.8
3,749,043	+		LRK54_RS17165	0.48	-0.5
3,749,043	+		LRK54_RS17165	0.48	-0.7
3,749,043	+		LRK54_RS17165	0.48	+0.0
3,749,044	-		LRK54_RS17165	0.48	+0.6
3,749,044	-		LRK54_RS17165	0.48	-0.2
3,749,044	-		LRK54_RS17165	0.48	-0.2
3,749,044	-		LRK54_RS17165	0.48	-0.3
3,749,044	-		LRK54_RS17165	0.48	-0.1
3,749,044	-		LRK54_RS17165	0.48	-0.3
3,749,044	-		LRK54_RS17165	0.48	+0.4
3,749,044	-		LRK54_RS17165	0.48	-0.1
3,749,044	-		LRK54_RS17165	0.48	-1.0
3,749,370	+		LRK54_RS17165	0.58	+0.6
3,749,370	+		LRK54_RS17165	0.58	+0.6
3,749,370	+		LRK54_RS17165	0.58	+0.7
3,749,370	+		LRK54_RS17165	0.58	-0.1
3,749,370	+		LRK54_RS17165	0.58	+0.3
3,749,370	+		LRK54_RS17165	0.58	-0.3
3,749,370	+		LRK54_RS17165	0.58	+0.1
3,749,370	+		LRK54_RS17165	0.58	+1.9
3,749,370	+		LRK54_RS17165	0.58	-0.9
3,749,371	-		LRK54_RS17165	0.58	-0.8
3,749,371	-		LRK54_RS17165	0.58	+0.6
3,749,371	-		LRK54_RS17165	0.58	-1.4
3,749,371	-		LRK54_RS17165	0.58	+0.4
3,749,371	-		LRK54_RS17165	0.58	+0.3
3,749,371	-		LRK54_RS17165	0.58	-0.3
3,749,371	-		LRK54_RS17165	0.58	-0.5
3,749,371	-		LRK54_RS17165	0.58	+0.8
3,749,371	-		LRK54_RS17165	0.58	+1.0
3,749,371	-		LRK54_RS17165	0.58	+0.3
3,749,371	-		LRK54_RS17165	0.58	+1.0
3,749,371	-		LRK54_RS17165	0.58	+1.6
3,749,371	-		LRK54_RS17165	0.58	+0.3
3,749,371	-		LRK54_RS17165	0.58	+0.3
3,749,371	-		LRK54_RS17165	0.58	+0.2
3,749,371	-		LRK54_RS17165	0.58	-0.0
3,749,391	+		LRK54_RS17165	0.59	+0.4
3,749,391	+		LRK54_RS17165	0.59	+3.3
3,749,391	+		LRK54_RS17165	0.59	+1.7
3,749,392	-		LRK54_RS17165	0.59	+0.5
3,749,392	-		LRK54_RS17165	0.59	+0.0
3,749,392	-		LRK54_RS17165	0.59	+0.9
3,749,392	-		LRK54_RS17165	0.59	-0.6
3,749,392	-		LRK54_RS17165	0.59	-0.5
3,749,610	+		LRK54_RS17165	0.65	+1.2
3,749,610	+		LRK54_RS17165	0.65	+1.3
3,749,709	+		LRK54_RS17165	0.68	-0.4
3,749,709	+		LRK54_RS17165	0.68	+1.0
3,749,710	-		LRK54_RS17165	0.68	-0.0
3,749,710	-		LRK54_RS17165	0.68	-0.1
3,749,829	+		LRK54_RS17165	0.71	+0.7
3,749,835	+		LRK54_RS17165	0.72	+1.0
3,749,835	+		LRK54_RS17165	0.72	+0.2
3,749,835	+		LRK54_RS17165	0.72	-0.4
3,749,835	+		LRK54_RS17165	0.72	-0.5
3,749,835	+		LRK54_RS17165	0.72	+1.2
3,749,835	+		LRK54_RS17165	0.72	-0.3
3,749,835	+		LRK54_RS17165	0.72	+1.3
3,749,835	+		LRK54_RS17165	0.72	-1.5
3,749,835	+		LRK54_RS17165	0.72	+0.7
3,749,835	+		LRK54_RS17165	0.72	+0.8
3,749,835	+		LRK54_RS17165	0.72	-0.3
3,749,836	-		LRK54_RS17165	0.72	+0.7
3,749,836	-		LRK54_RS17165	0.72	+1.3
3,749,836	-		LRK54_RS17165	0.72	+0.1
3,749,836	-		LRK54_RS17165	0.72	+0.3
3,749,836	-		LRK54_RS17165	0.72	+0.0
3,749,836	-		LRK54_RS17165	0.72	+0.5
3,749,836	-		LRK54_RS17165	0.72	+0.7
3,749,836	-		LRK54_RS17165	0.72	-0.4
3,749,836	-		LRK54_RS17165	0.72	+0.1
3,749,836	-		LRK54_RS17165	0.72	-1.1
3,749,836	-		LRK54_RS17165	0.72	-0.9
3,749,836	-		LRK54_RS17165	0.72	+0.8
3,749,836	-		LRK54_RS17165	0.72	-0.6
3,749,839	+		LRK54_RS17165	0.72	+0.7
3,749,839	+		LRK54_RS17165	0.72	+0.3
3,749,840	-		LRK54_RS17165	0.72	-0.5
3,749,840	-		LRK54_RS17165	0.72	-0.6
3,749,840	-		LRK54_RS17165	0.72	+0.8
3,749,840	-		LRK54_RS17165	0.72	+0.9
3,749,840	-		LRK54_RS17165	0.72	+0.3
3,749,958	+		LRK54_RS17165	0.75	+0.8
3,749,958	+		LRK54_RS17165	0.75	+1.1
3,749,958	+		LRK54_RS17165	0.75	+0.3
3,749,958	+		LRK54_RS17165	0.75	-0.3
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