Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17150

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,742,798	+		LRK54_RS17145	0.78	+0.5
3,742,798	+		LRK54_RS17145	0.78	+0.2
3,742,798	+		LRK54_RS17145	0.78	+0.0
3,742,798	+		LRK54_RS17145	0.78	-0.4
3,742,798	+		LRK54_RS17145	0.78	-1.1
3,742,798	+		LRK54_RS17145	0.78	+0.2
3,742,798	+		LRK54_RS17145	0.78	-0.7
3,742,798	+		LRK54_RS17145	0.78	-0.3
3,742,798	+		LRK54_RS17145	0.78	+0.6
3,742,799	-		LRK54_RS17145	0.79	-0.7
3,742,799	-		LRK54_RS17145	0.79	-0.6
3,742,799	-		LRK54_RS17145	0.79	-1.2
3,742,799	-		LRK54_RS17145	0.79	-0.4
3,742,799	-		LRK54_RS17145	0.79	-0.8
3,742,799	-		LRK54_RS17145	0.79	-1.0
3,742,799	-		LRK54_RS17145	0.79	+1.1
3,742,799	-		LRK54_RS17145	0.79	+1.5
3,742,799	-		LRK54_RS17145	0.79	-1.3
3,742,799	-		LRK54_RS17145	0.79	+0.0
3,742,799	-		LRK54_RS17145	0.79	+0.3
3,742,921	+		LRK54_RS17145	0.83	+0.7
3,742,922	-		LRK54_RS17145	0.83	+0.2
3,742,922	-		LRK54_RS17145	0.83	+0.2
3,742,922	-		LRK54_RS17145	0.83	-1.3
3,742,922	-		LRK54_RS17145	0.83	+0.5
3,742,922	-		LRK54_RS17145	0.83	+0.9
3,742,922	-		LRK54_RS17145	0.83	+0.3
3,742,922	-		LRK54_RS17145	0.83	-0.5
3,743,050	+		LRK54_RS17145	0.88	+0.9
3,743,050	+		LRK54_RS17145	0.88	+0.3
3,743,050	+		LRK54_RS17145	0.88	+1.3
3,743,050	+		LRK54_RS17145	0.88	-0.9
3,743,050	+		LRK54_RS17145	0.88	-0.5
3,743,050	+		LRK54_RS17145	0.88	-0.6
3,743,050	+		LRK54_RS17145	0.88	-0.0
3,743,051	-		LRK54_RS17145	0.88	+0.1
3,743,051	-		LRK54_RS17145	0.88	-0.3
3,743,051	-		LRK54_RS17145	0.88	+0.2
3,743,051	-		LRK54_RS17145	0.88	+0.3
3,743,051	-		LRK54_RS17145	0.88	-0.5
3,743,051	-		LRK54_RS17145	0.88	+0.5
3,743,051	-		LRK54_RS17145	0.88	-0.2
3,743,051	-		LRK54_RS17145	0.88	-0.4
3,743,062	-		LRK54_RS17145	0.88	+0.7
3,743,221	+				-0.6
3,743,221	+				+0.5
3,743,221	+				+2.3
3,743,222	-				-1.0
3,743,222	-				+0.2
3,743,389	+				-0.3
3,743,389	+				-1.5
3,743,389	+				-1.4
3,743,389	+				+0.8
3,743,389	+				+1.0
3,743,389	+				-0.7
3,743,390	-				+0.0
3,743,390	-				-0.1
3,743,390	-				-0.2
3,743,390	-				+1.0
3,743,450	+				+1.6
3,743,450	+				-0.0
3,743,450	+				+0.7
3,743,451	-				-0.5
3,743,451	-				-1.5
3,743,451	-				-0.4
3,743,451	-				+0.4
3,743,451	-				+0.6
3,743,866	+				+0.1
3,743,866	+				+0.9
3,743,866	+				-0.3
3,743,866	+				+0.5
3,743,866	+				+0.2
3,743,867	-				+0.1
3,743,867	-				+0.6
3,743,867	-				+2.7
3,743,867	-				+0.3
3,743,867	-				+0.4
3,743,867	-				-0.0
3,744,058	+		LRK54_RS17150	0.30	+0.7
3,744,058	+		LRK54_RS17150	0.30	+0.7
3,744,058	+		LRK54_RS17150	0.30	+2.0
3,744,058	+		LRK54_RS17150	0.30	-0.7
3,744,058	+		LRK54_RS17150	0.30	+1.0
3,744,058	+		LRK54_RS17150	0.30	-0.6
3,744,058	+		LRK54_RS17150	0.30	+0.3
3,744,058	+		LRK54_RS17150	0.30	+0.9
3,744,058	+		LRK54_RS17150	0.30	-0.1
3,744,059	-		LRK54_RS17150	0.30	+1.6
3,744,059	-		LRK54_RS17150	0.30	-1.3
3,744,059	-		LRK54_RS17150	0.30	+0.9
3,744,059	-		LRK54_RS17150	0.30	-0.5
3,744,059	-		LRK54_RS17150	0.30	+0.5
3,744,059	-		LRK54_RS17150	0.30	-0.8
3,744,059	-		LRK54_RS17150	0.30	+0.7
3,744,059	-		LRK54_RS17150	0.30	-0.9
3,744,059	-		LRK54_RS17150	0.30	+0.5
3,744,059	-		LRK54_RS17150	0.30	-0.5
3,744,059	-		LRK54_RS17150	0.30	+1.7
3,744,059	-		LRK54_RS17150	0.30	-0.1
3,744,059	-		LRK54_RS17150	0.30	+0.2
3,744,059	-		LRK54_RS17150	0.30	+0.3
3,744,059	-		LRK54_RS17150	0.30	+0.4
3,744,059	-		LRK54_RS17150	0.30	+0.4
3,744,059	-		LRK54_RS17150	0.30	-0.5
3,744,059	-		LRK54_RS17150	0.30	-1.8
3,744,059	-		LRK54_RS17150	0.30	-0.3
3,744,247	+		LRK54_RS17150	0.51	+0.7
3,744,247	+		LRK54_RS17150	0.51	+2.3
3,744,247	+		LRK54_RS17150	0.51	+1.9
3,744,247	+		LRK54_RS17150	0.51	-0.5
3,744,247	+		LRK54_RS17150	0.51	-0.8
3,744,247	+		LRK54_RS17150	0.51	+2.1
3,744,247	+		LRK54_RS17150	0.51	-0.4
3,744,247	+		LRK54_RS17150	0.51	+0.2
3,744,247	+		LRK54_RS17150	0.51	-0.2
3,744,247	+		LRK54_RS17150	0.51	+0.5
3,744,247	+		LRK54_RS17150	0.51	+0.7
3,744,247	+		LRK54_RS17150	0.51	+0.7
3,744,248	-		LRK54_RS17150	0.51	-0.6
3,744,248	-		LRK54_RS17150	0.51	+0.0
3,744,248	-		LRK54_RS17150	0.51	+0.7
3,744,248	-		LRK54_RS17150	0.51	-0.7
3,744,248	-		LRK54_RS17150	0.51	-0.3
3,744,248	-		LRK54_RS17150	0.51	-0.7
3,744,248	-		LRK54_RS17150	0.51	+0.3
3,744,248	-		LRK54_RS17150	0.51	+0.1
3,744,248	-		LRK54_RS17150	0.51	+0.1
3,744,248	-		LRK54_RS17150	0.51	+1.1
3,744,248	-		LRK54_RS17150	0.51	+0.2
3,744,248	-		LRK54_RS17150	0.51	+0.5
3,744,280	+		LRK54_RS17150	0.55	+0.4
3,744,280	+		LRK54_RS17150	0.55	-0.7
3,744,280	+		LRK54_RS17150	0.55	+2.3
3,744,280	+		LRK54_RS17150	0.55	+1.4
3,744,280	+		LRK54_RS17150	0.55	-1.0
3,744,280	+		LRK54_RS17150	0.55	+1.3
3,744,280	+		LRK54_RS17150	0.55	+1.3
3,744,280	+		LRK54_RS17150	0.55	+0.3
3,744,280	+		LRK54_RS17150	0.55	-0.3
3,744,280	+		LRK54_RS17150	0.55	+0.6
3,744,280	+		LRK54_RS17150	0.55	+0.5
3,744,280	+		LRK54_RS17150	0.55	-0.4
3,744,280	+		LRK54_RS17150	0.55	-2.0
3,744,280	+		LRK54_RS17150	0.55	+0.5
3,744,280	+		LRK54_RS17150	0.55	+0.9
3,744,280	+		LRK54_RS17150	0.55	-0.5
3,744,280	+		LRK54_RS17150	0.55	-0.0
3,744,280	+		LRK54_RS17150	0.55	-0.4
3,744,280	+		LRK54_RS17150	0.55	-0.1
3,744,280	+		LRK54_RS17150	0.55	+0.3
3,744,280	+		LRK54_RS17150	0.55	+0.3
3,744,280	+		LRK54_RS17150	0.55	+0.4
3,744,281	-		LRK54_RS17150	0.55	+0.0
3,744,281	-		LRK54_RS17150	0.55	-0.7
3,744,281	-		LRK54_RS17150	0.55	+0.2
3,744,281	-		LRK54_RS17150	0.55	-0.8
3,744,281	-		LRK54_RS17150	0.55	-0.1
3,744,281	-		LRK54_RS17150	0.55	+0.5
3,744,281	-		LRK54_RS17150	0.55	-0.2
3,744,281	-		LRK54_RS17150	0.55	+1.6
3,744,281	-		LRK54_RS17150	0.55	-0.3
3,744,281	-		LRK54_RS17150	0.55	+1.2
3,744,281	-		LRK54_RS17150	0.55	+0.6
3,744,281	-		LRK54_RS17150	0.55	+0.2
3,744,281	-		LRK54_RS17150	0.55	-2.4
3,744,281	-		LRK54_RS17150	0.55	+2.9
3,744,281	-		LRK54_RS17150	0.55	+0.1
3,744,281	-		LRK54_RS17150	0.55	-0.1
3,744,281	-		LRK54_RS17150	0.55	+1.0
3,744,281	-		LRK54_RS17150	0.55	+0.0
3,744,281	-		LRK54_RS17150	0.55	-1.2
3,744,281	-		LRK54_RS17150	0.55	+0.7
3,744,281	-		LRK54_RS17150	0.55	+0.6
3,744,281	-		LRK54_RS17150	0.55	-2.4
3,744,281	-		LRK54_RS17150	0.55	+0.0
3,744,282	-		LRK54_RS17150	0.55	-0.1
3,744,421	+		LRK54_RS17150	0.71	-0.3
3,744,421	+		LRK54_RS17150	0.71	+0.5
3,744,421	+		LRK54_RS17150	0.71	+0.7
3,744,422	-		LRK54_RS17150	0.71	-1.3
3,744,460	+		LRK54_RS17150	0.75	-0.5
3,744,627	+				-0.5
3,744,628	-				-1.4
3,744,754	+				-0.3
3,744,754	+				+0.0
3,744,755	-				-0.8
3,744,755	-				+0.1
3,744,755	-				+2.0
3,744,854	+		LRK54_RS17155	0.13	+0.7
3,744,854	+		LRK54_RS17155	0.13	+0.0
3,744,883	+		LRK54_RS17155	0.17	-1.2
3,744,883	+		LRK54_RS17155	0.17	+0.4
3,744,883	+		LRK54_RS17155	0.17	+0.0
3,744,883	+		LRK54_RS17155	0.17	+0.3
3,744,883	+		LRK54_RS17155	0.17	+0.5
3,744,883	+		LRK54_RS17155	0.17	+0.0
3,744,883	+		LRK54_RS17155	0.17	-0.4
3,744,883	+		LRK54_RS17155	0.17	-0.1
3,744,884	-		LRK54_RS17155	0.17	-0.1
3,744,884	-		LRK54_RS17155	0.17	+0.6
3,744,884	-		LRK54_RS17155	0.17	-0.8
3,744,884	-		LRK54_RS17155	0.17	+0.2
3,744,884	-		LRK54_RS17155	0.17	-0.4
3,744,922	+		LRK54_RS17155	0.22	-0.3
3,744,922	+		LRK54_RS17155	0.22	+0.7
3,744,922	+		LRK54_RS17155	0.22	+0.4
3,744,922	+		LRK54_RS17155	0.22	+0.5
3,744,922	+		LRK54_RS17155	0.22	-0.0
3,744,923	-		LRK54_RS17155	0.22	+1.7
3,744,923	-		LRK54_RS17155	0.22	+0.2
3,744,923	-		LRK54_RS17155	0.22	+0.3
3,744,923	-		LRK54_RS17155	0.22	-0.3
3,744,923	-		LRK54_RS17155	0.22	-0.9
3,744,926	+		LRK54_RS17155	0.22	+0.1
3,744,926	+		LRK54_RS17155	0.22	+1.3
3,744,926	+		LRK54_RS17155	0.22	-1.7
3,744,926	+		LRK54_RS17155	0.22	-0.5
3,744,926	+		LRK54_RS17155	0.22	+1.0
3,744,926	+		LRK54_RS17155	0.22	+0.2
3,744,926	+		LRK54_RS17155	0.22	+1.0
3,744,927	-		LRK54_RS17155	0.22	-0.3
3,744,927	-		LRK54_RS17155	0.22	+0.5
3,744,927	-		LRK54_RS17155	0.22	-0.0
3,744,927	-		LRK54_RS17155	0.22	-2.1
3,744,927	-		LRK54_RS17155	0.22	+0.0
3,744,927	-		LRK54_RS17155	0.22	+0.9
3,744,927	-		LRK54_RS17155	0.22	-1.3
3,744,927	-		LRK54_RS17155	0.22	-0.7
3,744,927	-		LRK54_RS17155	0.22	+0.3
3,744,927	-		LRK54_RS17155	0.22	-0.2
3,744,934	+		LRK54_RS17155	0.23	-0.2
3,744,935	-		LRK54_RS17155	0.23	-1.0
3,744,935	-		LRK54_RS17155	0.23	-0.8
3,744,961	-		LRK54_RS17155	0.26	+0.7
3,744,961	-		LRK54_RS17155	0.26	+0.4
3,744,987	+		LRK54_RS17155	0.30	+0.6
3,744,987	+		LRK54_RS17155	0.30	-0.7
3,744,987	+		LRK54_RS17155	0.30	-1.0
3,744,988	-		LRK54_RS17155	0.30	+0.7
3,745,090	+		LRK54_RS17155	0.43	+2.1
3,745,090	+		LRK54_RS17155	0.43	+1.1
3,745,091	-		LRK54_RS17155	0.43	-0.1
3,745,129	+		LRK54_RS17155	0.48	-1.3
3,745,130	-		LRK54_RS17155	0.48	-0.5
3,745,130	-		LRK54_RS17155	0.48	-0.7
3,745,239	+		LRK54_RS17155	0.62	-0.5
3,745,239	+		LRK54_RS17155	0.62	+0.1
3,745,239	+		LRK54_RS17155	0.62	-0.2
3,745,239	+		LRK54_RS17155	0.62	-0.3
3,745,240	-		LRK54_RS17155	0.62	+1.0
3,745,240	-		LRK54_RS17155	0.62	+0.7
3,745,240	-		LRK54_RS17155	0.62	+0.3
3,745,311	+		LRK54_RS17155	0.71	+0.9
3,745,311	+		LRK54_RS17155	0.71	+1.0
3,745,311	+		LRK54_RS17155	0.71	-0.3
3,745,311	+		LRK54_RS17155	0.71	+2.3
3,745,311	+		LRK54_RS17155	0.71	-0.1
3,745,311	+		LRK54_RS17155	0.71	+0.6
3,745,311	+		LRK54_RS17155	0.71	-0.6
3,745,311	+		LRK54_RS17155	0.71	-0.1
3,745,311	+		LRK54_RS17155	0.71	-0.3
3,745,312	-		LRK54_RS17155	0.71	+0.3
3,745,312	-		LRK54_RS17155	0.71	+0.2
3,745,312	-		LRK54_RS17155	0.71	+0.6
3,745,312	-		LRK54_RS17155	0.71	-0.7
3,745,312	-		LRK54_RS17155	0.71	+0.6