Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17035

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,723,474	+		LRK54_RS17030	0.24	+0.2
3,723,474	+		LRK54_RS17030	0.24	-0.0
3,723,474	+		LRK54_RS17030	0.24	-0.1
3,723,474	+		LRK54_RS17030	0.24	+0.3
3,723,474	+		LRK54_RS17030	0.24	-0.3
3,723,474	+		LRK54_RS17030	0.24	-1.8
3,723,474	+		LRK54_RS17030	0.24	-1.2
3,723,475	-		LRK54_RS17030	0.24	-0.5
3,723,475	-		LRK54_RS17030	0.24	-0.1
3,723,475	-		LRK54_RS17030	0.24	+3.6
3,723,748	+		LRK54_RS17030	0.50	-0.9
3,723,748	+		LRK54_RS17030	0.50	+0.1
3,723,748	+		LRK54_RS17030	0.50	-0.7
3,723,748	+		LRK54_RS17030	0.50	+0.5
3,723,748	+		LRK54_RS17030	0.50	-0.3
3,723,748	+		LRK54_RS17030	0.50	-1.2
3,723,748	+		LRK54_RS17030	0.50	-0.5
3,723,748	+		LRK54_RS17030	0.50	-0.1
3,723,748	+		LRK54_RS17030	0.50	+1.5
3,723,748	+		LRK54_RS17030	0.50	-1.3
3,723,748	+		LRK54_RS17030	0.50	+0.8
3,723,749	-		LRK54_RS17030	0.50	+0.8
3,723,749	-		LRK54_RS17030	0.50	+0.8
3,723,749	-		LRK54_RS17030	0.50	-0.3
3,723,749	-		LRK54_RS17030	0.50	-1.4
3,723,749	-		LRK54_RS17030	0.50	+1.0
3,723,749	-		LRK54_RS17030	0.50	-0.9
3,723,749	-		LRK54_RS17030	0.50	+0.2
3,723,749	-		LRK54_RS17030	0.50	+0.1
3,723,781	+		LRK54_RS17030	0.53	-0.6
3,723,782	-		LRK54_RS17030	0.53	+0.5
3,723,782	-		LRK54_RS17030	0.53	+1.6
3,723,782	-		LRK54_RS17030	0.53	-1.0
3,723,782	-		LRK54_RS17030	0.53	-0.9
3,723,952	+		LRK54_RS17030	0.69	-1.2
3,723,952	+		LRK54_RS17030	0.69	+3.3
3,723,952	+		LRK54_RS17030	0.69	+0.2
3,723,952	+		LRK54_RS17030	0.69	-0.9
3,723,952	+		LRK54_RS17030	0.69	-0.3
3,723,952	+		LRK54_RS17030	0.69	-0.8
3,723,952	+		LRK54_RS17030	0.69	+1.1
3,723,952	+		LRK54_RS17030	0.69	-0.6
3,723,952	+		LRK54_RS17030	0.69	+0.4
3,723,952	+		LRK54_RS17030	0.69	-0.1
3,723,952	+		LRK54_RS17030	0.69	-0.7
3,723,952	+		LRK54_RS17030	0.69	-1.0
3,723,952	+		LRK54_RS17030	0.69	+0.9
3,723,952	+		LRK54_RS17030	0.69	+0.6
3,723,952	+		LRK54_RS17030	0.69	+0.5
3,723,952	+		LRK54_RS17030	0.69	+1.4
3,723,952	+		LRK54_RS17030	0.69	-0.5
3,723,953	-		LRK54_RS17030	0.70	-0.3
3,723,953	-		LRK54_RS17030	0.70	+0.1
3,723,953	-		LRK54_RS17030	0.70	+2.1
3,723,953	-		LRK54_RS17030	0.70	-0.3
3,723,953	-				+1.7
3,723,953	-		LRK54_RS17030	0.70	+0.3
3,723,953	-		LRK54_RS17030	0.70	-0.3
3,723,953	-		LRK54_RS17030	0.70	-0.6
3,723,953	-		LRK54_RS17030	0.70	+0.5
3,723,953	-		LRK54_RS17030	0.70	+0.0
3,724,020	+		LRK54_RS17030	0.76	-0.3
3,724,021	-		LRK54_RS17030	0.76	+0.1
3,724,021	-		LRK54_RS17030	0.76	-0.3
3,724,174	+				+0.9
3,724,174	+				-0.3
3,724,174	+				-1.6
3,724,175	-				-0.3
3,724,175	-				+2.3
3,724,175	-				-0.1
3,724,175	-				+0.4
3,724,175	-				-0.9
3,724,175	-				-0.6
3,724,175	-				-0.8
3,724,198	+				-0.8
3,724,198	+				-1.3
3,724,199	-				-1.2
3,724,199	-				-1.1
3,724,199	-				-1.2
3,724,205	+				+0.3
3,724,206	-				+0.6
3,724,252	+				+0.4
3,724,252	+				+1.3
3,724,252	+				+0.6
3,724,252	+				+0.9
3,724,252	+				+0.1
3,724,252	+				+0.7
3,724,252	+				+0.3
3,724,253	-				-0.1
3,724,253	-				-0.3
3,724,253	-				-0.9
3,724,253	-				-0.9
3,724,253	-				+0.5
3,724,253	-				-2.1
3,724,264	+				-1.3
3,724,264	+				-0.3
3,724,264	+				+0.0
3,724,264	+				-0.0
3,724,264	+				+1.7
3,724,264	+				-0.9
3,724,264	+				+0.2
3,724,264	+				-1.4
3,724,264	+				-0.5
3,724,264	+				-0.0
3,724,264	+				+0.3
3,724,264	+				+0.5
3,724,264	+				-0.1
3,724,264	+				+2.0
3,724,264	+				+0.4
3,724,264	+				+0.1
3,724,264	+				+0.6
3,724,264	+				-0.1
3,724,264	+				-0.1
3,724,264	+				+0.1
3,724,264	+				-0.2
3,724,264	+				-0.7
3,724,264	+				-0.8
3,724,264	+				-0.7
3,724,264	+				+1.3
3,724,264	+				-0.3
3,724,264	+				-0.5
3,724,264	+				-0.4
3,724,264	+				-0.5
3,724,264	+				-0.4
3,724,264	+				+1.1
3,724,264	+				+0.5
3,724,264	+				-0.5
3,724,264	+				+0.1
3,724,264	+				+0.3
3,724,264	+				+1.2
3,724,264	+				+0.8
3,724,264	+				-0.5
3,724,265	-				-0.4
3,724,265	-				+0.1
3,724,265	-				+0.1
3,724,265	-				+0.1
3,724,265	-				-0.1
3,724,265	-				-2.9
3,724,265	-				-0.9
3,724,265	-				-1.0
3,724,265	-				+0.2
3,724,265	-				-2.1
3,724,265	-				+1.5
3,724,265	-				-0.7
3,724,265	-				-0.3
3,724,265	-				-0.6
3,724,265	-				-0.7
3,724,265	-				+0.1
3,724,265	-				-0.3
3,724,265	-				+0.5
3,724,265	-				-1.0
3,724,265	-				+0.5
3,724,265	-				+0.1
3,724,265	-				+0.2
3,724,265	-				-1.3
3,724,265	-				-1.9
3,724,265	-				+0.1
3,724,265	-				-0.2
3,724,265	-				-0.7
3,724,265	-				+1.0
3,724,265	-				-0.1
3,724,480	+		LRK54_RS17035	0.27	+0.6
3,724,480	+		LRK54_RS17035	0.27	-0.6
3,724,480	+		LRK54_RS17035	0.27	-0.3
3,724,480	+		LRK54_RS17035	0.27	+1.0
3,724,481	-		LRK54_RS17035	0.27	+0.7
3,724,481	-		LRK54_RS17035	0.27	-0.7
3,724,481	-		LRK54_RS17035	0.27	+0.1
3,724,481	-		LRK54_RS17035	0.27	+0.5
3,724,481	-		LRK54_RS17035	0.27	+0.8
3,725,008	+				-0.5
3,725,008	+				-0.2
3,725,008	+				-0.2
3,725,008	+				-0.3
3,725,008	+				-0.5
3,725,008	+				-0.9
3,725,009	-				-1.0
3,725,009	-				+1.3
3,725,009	-				-0.8
3,725,009	-				+1.3
3,725,009	-				-1.9
3,725,009	-				-0.2
3,725,009	-				-0.4
3,725,216	+				-0.2
3,725,216	+				-1.0
3,725,216	+				+0.2
3,725,216	+				+0.5
3,725,216	+				-0.5
3,725,216	+				-0.5
3,725,216	+				+2.3
3,725,217	-				-2.2
3,725,217	-				-1.8
3,725,217	-				-1.0
3,725,227	+				+0.1
3,725,256	+				-0.8
3,725,257	-				-0.5
3,725,257	-				+0.3
3,725,257	-				+0.1
3,725,257	-				-0.7
3,725,257	-				-0.7
3,725,259	+				-1.0
3,725,259	+				-1.4
3,725,259	+				+0.2
3,725,259	+				+0.1
3,725,259	+				-0.9
3,725,259	+				+0.1
3,725,259	+				-0.2
3,725,259	+				+0.1
3,725,259	+				-0.1
3,725,259	+				-0.3
3,725,259	+				+0.0
3,725,259	+				+0.7
3,725,259	+				-0.9
3,725,259	+				-0.6
3,725,259	+				-0.1
3,725,259	+				-0.2
3,725,259	+				-1.2
3,725,287	+				-3.3