Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16955

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,708,029	+		LRK54_RS16950	0.50	-0.0
3,708,029	+		LRK54_RS16950	0.50	+0.4
3,708,029	+		LRK54_RS16950	0.50	+1.3
3,708,029	+		LRK54_RS16950	0.50	-1.3
3,708,029	+		LRK54_RS16950	0.50	-2.2
3,708,029	+		LRK54_RS16950	0.50	-0.9
3,708,029	+		LRK54_RS16950	0.50	+0.1
3,708,029	+		LRK54_RS16950	0.50	-0.0
3,708,029	+		LRK54_RS16950	0.50	+1.0
3,708,029	+		LRK54_RS16950	0.50	-2.0
3,708,029	+		LRK54_RS16950	0.50	+0.7
3,708,029	+		LRK54_RS16950	0.50	+0.6
3,708,029	+		LRK54_RS16950	0.50	+0.0
3,708,029	+		LRK54_RS16950	0.50	+2.3
3,708,029	+		LRK54_RS16950	0.50	-0.2
3,708,029	+		LRK54_RS16950	0.50	-1.0
3,708,029	+		LRK54_RS16950	0.50	+1.3
3,708,029	+		LRK54_RS16950	0.50	-1.0
3,708,029	+		LRK54_RS16950	0.50	-1.5
3,708,029	+		LRK54_RS16950	0.50	-1.6
3,708,029	+		LRK54_RS16950	0.50	-1.7
3,708,029	+		LRK54_RS16950	0.50	-1.8
3,708,029	+		LRK54_RS16950	0.50	+0.3
3,708,029	+		LRK54_RS16950	0.50	-0.1
3,708,029	+		LRK54_RS16950	0.50	+0.3
3,708,030	-		LRK54_RS16950	0.50	-0.7
3,708,030	-		LRK54_RS16950	0.50	-1.6
3,708,030	-		LRK54_RS16950	0.50	-1.8
3,708,030	-		LRK54_RS16950	0.50	-0.4
3,708,030	-		LRK54_RS16950	0.50	-0.1
3,708,030	-		LRK54_RS16950	0.50	+0.5
3,708,030	-		LRK54_RS16950	0.50	-1.8
3,708,030	-		LRK54_RS16950	0.50	-0.7
3,708,030	-		LRK54_RS16950	0.50	-0.6
3,708,030	-		LRK54_RS16950	0.50	+1.3
3,708,030	-		LRK54_RS16950	0.50	-0.4
3,708,030	-		LRK54_RS16950	0.50	-1.7
3,708,030	-		LRK54_RS16950	0.50	-1.6
3,708,047	+		LRK54_RS16950	0.51	-0.8
3,708,047	+		LRK54_RS16950	0.51	+0.7
3,708,047	+		LRK54_RS16950	0.51	+0.7
3,708,047	+		LRK54_RS16950	0.51	+2.3
3,708,047	+		LRK54_RS16950	0.51	+0.5
3,708,047	+		LRK54_RS16950	0.51	-1.5
3,708,047	+		LRK54_RS16950	0.51	+2.7
3,708,047	+		LRK54_RS16950	0.51	+2.3
3,708,047	+		LRK54_RS16950	0.51	-0.9
3,708,047	+		LRK54_RS16950	0.51	-0.5
3,708,047	+		LRK54_RS16950	0.51	+1.3
3,708,047	+		LRK54_RS16950	0.51	-0.7
3,708,048	-		LRK54_RS16950	0.51	+0.6
3,708,048	-		LRK54_RS16950	0.51	-1.5
3,708,048	-		LRK54_RS16950	0.51	-0.6
3,708,048	-		LRK54_RS16950	0.51	-1.7
3,708,048	-		LRK54_RS16950	0.51	-0.0
3,708,048	-		LRK54_RS16950	0.51	-0.0
3,708,048	-		LRK54_RS16950	0.51	-0.3
3,708,119	+		LRK54_RS16950	0.56	-1.7
3,708,119	+		LRK54_RS16950	0.56	-0.8
3,708,119	+		LRK54_RS16950	0.56	+1.1
3,708,119	+		LRK54_RS16950	0.56	-0.2
3,708,119	+		LRK54_RS16950	0.56	+1.3
3,708,119	+		LRK54_RS16950	0.56	-2.9
3,708,119	+		LRK54_RS16950	0.56	+0.7
3,708,119	+		LRK54_RS16950	0.56	+1.3
3,708,119	+		LRK54_RS16950	0.56	-0.4
3,708,119	+		LRK54_RS16950	0.56	-0.4
3,708,119	+		LRK54_RS16950	0.56	-2.4
3,708,119	+		LRK54_RS16950	0.56	-0.4
3,708,119	+		LRK54_RS16950	0.56	-0.7
3,708,119	+		LRK54_RS16950	0.56	-0.5
3,708,120	-		LRK54_RS16950	0.56	+0.0
3,708,120	-		LRK54_RS16950	0.56	-0.5
3,708,120	-		LRK54_RS16950	0.56	-0.0
3,708,120	-		LRK54_RS16950	0.56	-0.9
3,708,120	-		LRK54_RS16950	0.56	-0.2
3,708,120	-		LRK54_RS16950	0.56	-0.0
3,708,120	-		LRK54_RS16950	0.56	-2.0
3,708,120	-		LRK54_RS16950	0.56	-1.3
3,708,120	-		LRK54_RS16950	0.56	-0.3
3,708,120	-		LRK54_RS16950	0.56	-1.2
3,708,120	-		LRK54_RS16950	0.56	-0.8
3,708,281	+		LRK54_RS16950	0.67	-0.2
3,708,281	+		LRK54_RS16950	0.67	-1.0
3,708,281	+		LRK54_RS16950	0.67	-3.6
3,708,281	+		LRK54_RS16950	0.67	+0.3
3,708,281	+		LRK54_RS16950	0.67	-1.3
3,708,282	-		LRK54_RS16950	0.67	-1.7
3,708,282	-		LRK54_RS16950	0.67	-1.5
3,708,850	+				+0.8
3,708,851	-				-0.1
3,708,858	+				-1.7
3,709,122	+		LRK54_RS16955	0.10	-0.9
3,709,122	+		LRK54_RS16955	0.10	-1.2
3,709,122	+		LRK54_RS16955	0.10	-0.7
3,709,123	-		LRK54_RS16955	0.10	-2.7
3,709,123	-		LRK54_RS16955	0.10	-1.2
3,709,123	-		LRK54_RS16955	0.10	-0.2
3,709,123	-		LRK54_RS16955	0.10	-0.9
3,709,146	+		LRK54_RS16955	0.12	-1.3
3,709,146	+		LRK54_RS16955	0.12	+1.2
3,709,146	+		LRK54_RS16955	0.12	-0.3
3,709,146	+		LRK54_RS16955	0.12	+1.0
3,709,146	+		LRK54_RS16955	0.12	-1.6
3,709,146	+		LRK54_RS16955	0.12	+1.5
3,709,146	+		LRK54_RS16955	0.12	-1.7
3,709,146	+		LRK54_RS16955	0.12	-1.7
3,709,146	+		LRK54_RS16955	0.12	+0.7
3,709,146	+		LRK54_RS16955	0.12	-0.7
3,709,146	+		LRK54_RS16955	0.12	-0.7
3,709,147	-		LRK54_RS16955	0.12	-1.6
3,709,147	-		LRK54_RS16955	0.12	-1.8
3,709,147	-		LRK54_RS16955	0.12	-1.2
3,709,147	-		LRK54_RS16955	0.12	-1.3
3,709,147	-		LRK54_RS16955	0.12	+0.3
3,709,147	-		LRK54_RS16955	0.12	-0.3
3,709,147	-		LRK54_RS16955	0.12	-0.7
3,709,147	-		LRK54_RS16955	0.12	-0.9
3,709,147	-		LRK54_RS16955	0.12	-1.3
3,709,147	-		LRK54_RS16955	0.12	-0.9
3,709,147	-		LRK54_RS16955	0.12	-2.2
3,709,147	-		LRK54_RS16955	0.12	-0.3
3,709,147	-		LRK54_RS16955	0.12	-0.7
3,709,191	+		LRK54_RS16955	0.14	+0.1
3,709,191	+		LRK54_RS16955	0.14	+0.5
3,709,191	+		LRK54_RS16955	0.14	-1.3
3,709,192	-		LRK54_RS16955	0.14	-0.9
3,709,192	-		LRK54_RS16955	0.14	-0.0
3,709,192	-		LRK54_RS16955	0.14	+0.3
3,709,284	+		LRK54_RS16955	0.19	-0.7
3,709,284	+		LRK54_RS16955	0.19	-0.5
3,709,284	+		LRK54_RS16955	0.19	+1.7
3,709,284	+		LRK54_RS16955	0.19	+0.9
3,709,284	+		LRK54_RS16955	0.19	-1.0
3,709,284	+		LRK54_RS16955	0.19	-1.2
3,709,284	+		LRK54_RS16955	0.19	-0.9
3,709,284	+		LRK54_RS16955	0.19	-1.4
3,709,285	-		LRK54_RS16955	0.19	-0.5
3,709,285	-		LRK54_RS16955	0.19	+2.7
3,709,285	-		LRK54_RS16955	0.19	+0.7
3,709,285	-		LRK54_RS16955	0.19	-0.9
3,709,285	-		LRK54_RS16955	0.19	-2.0
3,709,285	-		LRK54_RS16955	0.19	-2.1
3,709,542	+		LRK54_RS16955	0.34	-0.7
3,709,542	+		LRK54_RS16955	0.34	-1.3
3,709,542	+		LRK54_RS16955	0.34	+0.9
3,709,542	+				+2.3
3,709,542	+		LRK54_RS16955	0.34	-0.3
3,709,542	+		LRK54_RS16955	0.34	-0.7
3,709,542	+		LRK54_RS16955	0.34	-1.9
3,709,542	+		LRK54_RS16955	0.34	-0.2
3,709,542	+		LRK54_RS16955	0.34	+1.7
3,709,542	+		LRK54_RS16955	0.34	+0.3
3,709,542	+		LRK54_RS16955	0.34	-1.6
3,709,542	+		LRK54_RS16955	0.34	+0.1
3,709,542	+		LRK54_RS16955	0.34	-2.0
3,709,542	+		LRK54_RS16955	0.34	-0.9
3,709,542	+		LRK54_RS16955	0.34	+0.5
3,709,542	+		LRK54_RS16955	0.34	-0.5
3,709,542	+		LRK54_RS16955	0.34	-0.4
3,709,542	+		LRK54_RS16955	0.34	-0.9
3,709,542	+		LRK54_RS16955	0.34	+0.7
3,709,542	+		LRK54_RS16955	0.34	-0.5
3,709,542	+		LRK54_RS16955	0.34	-1.4
3,709,542	+		LRK54_RS16955	0.34	+0.9
3,709,543	-		LRK54_RS16955	0.34	+0.7
3,709,543	-		LRK54_RS16955	0.34	-2.0
3,709,543	-		LRK54_RS16955	0.34	-0.7
3,709,543	-		LRK54_RS16955	0.34	+0.1
3,709,543	-		LRK54_RS16955	0.34	+0.3
3,709,543	-		LRK54_RS16955	0.34	-2.0
3,709,543	-		LRK54_RS16955	0.34	-0.4
3,709,543	-		LRK54_RS16955	0.34	-1.5
3,709,543	-		LRK54_RS16955	0.34	+1.3
3,709,543	-		LRK54_RS16955	0.34	-1.8
3,709,543	-		LRK54_RS16955	0.34	+0.7
3,709,543	-		LRK54_RS16955	0.34	+1.3
3,709,543	-		LRK54_RS16955	0.34	-2.9
3,709,543	-		LRK54_RS16955	0.34	-0.3
3,709,543	-		LRK54_RS16955	0.34	+0.7
3,709,543	-		LRK54_RS16955	0.34	+1.7
3,709,543	-		LRK54_RS16955	0.34	-1.2
3,709,543	-		LRK54_RS16955	0.34	-0.0
3,709,543	-		LRK54_RS16955	0.34	+0.3
3,709,543	-		LRK54_RS16955	0.34	-1.3
3,709,543	-		LRK54_RS16955	0.34	-0.6
3,709,543	-		LRK54_RS16955	0.34	-0.4
3,709,543	-		LRK54_RS16955	0.34	-1.3
3,709,543	-		LRK54_RS16955	0.34	-1.4
3,710,010	+		LRK54_RS16955	0.60	+0.6
3,710,010	+		LRK54_RS16955	0.60	+0.3
3,710,010	+		LRK54_RS16955	0.60	-0.2
3,710,010	+		LRK54_RS16955	0.60	-0.7
3,710,010	+		LRK54_RS16955	0.60	-1.2
3,710,011	-		LRK54_RS16955	0.60	+2.3
3,710,011	-		LRK54_RS16955	0.60	-1.6
3,710,011	-		LRK54_RS16955	0.60	+0.3
3,710,049	+		LRK54_RS16955	0.62	+0.3
3,710,049	+		LRK54_RS16955	0.62	-1.0
3,710,049	+		LRK54_RS16955	0.62	-0.3
3,710,049	+		LRK54_RS16955	0.62	-1.7
3,710,049	+		LRK54_RS16955	0.62	+0.6
3,710,049	+		LRK54_RS16955	0.62	+0.5
3,710,049	+		LRK54_RS16955	0.62	+0.2
3,710,049	+		LRK54_RS16955	0.62	+0.0
3,710,049	+		LRK54_RS16955	0.62	+0.7
3,710,049	+		LRK54_RS16955	0.62	+0.2
3,710,050	-		LRK54_RS16955	0.62	-0.0
3,710,050	-		LRK54_RS16955	0.62	-1.2
3,710,050	-		LRK54_RS16955	0.62	-2.2
3,710,050	-		LRK54_RS16955	0.62	-1.4
3,710,050	-		LRK54_RS16955	0.62	-2.3
3,710,178	+		LRK54_RS16955	0.69	-0.6
3,710,178	+		LRK54_RS16955	0.69	+0.0
3,710,178	+		LRK54_RS16955	0.69	+1.1
3,710,178	+		LRK54_RS16955	0.69	-0.1
3,710,178	+		LRK54_RS16955	0.69	-0.6
3,710,178	+		LRK54_RS16955	0.69	-0.6
3,710,178	+		LRK54_RS16955	0.69	-0.7
3,710,178	+		LRK54_RS16955	0.69	+0.6
3,710,178	+		LRK54_RS16955	0.69	-1.3
3,710,178	+		LRK54_RS16955	0.69	-1.2
3,710,178	+		LRK54_RS16955	0.69	+0.2
3,710,178	+		LRK54_RS16955	0.69	+2.9
3,710,178	+		LRK54_RS16955	0.69	+0.6
3,710,178	+		LRK54_RS16955	0.69	+0.7
3,710,178	+		LRK54_RS16955	0.69	-0.0
3,710,178	+		LRK54_RS16955	0.69	+0.3
3,710,178	+		LRK54_RS16955	0.69	-0.2
3,710,179	-		LRK54_RS16955	0.69	-2.0
3,710,179	-		LRK54_RS16955	0.69	-1.9
3,710,179	-		LRK54_RS16955	0.69	-0.3
3,710,179	-		LRK54_RS16955	0.69	-0.3
3,710,179	-		LRK54_RS16955	0.69	+1.7
3,710,179	-		LRK54_RS16955	0.69	-0.7
3,710,179	-		LRK54_RS16955	0.69	+0.5
3,710,179	-		LRK54_RS16955	0.69	+1.7
3,710,179	-		LRK54_RS16955	0.69	-0.9
3,710,238	+		LRK54_RS16955	0.73	-0.9
3,710,238	+		LRK54_RS16955	0.73	-0.1
3,710,238	+		LRK54_RS16955	0.73	-0.4
3,710,239	-		LRK54_RS16955	0.73	-1.2
3,710,239	-		LRK54_RS16955	0.73	-0.9
3,710,239	-		LRK54_RS16955	0.73	-1.6
3,710,239	-		LRK54_RS16955	0.73	+0.7
3,710,239	-		LRK54_RS16955	0.73	+1.0
3,710,265	+		LRK54_RS16955	0.74	-0.8
3,710,265	+		LRK54_RS16955	0.74	+0.7
3,710,265	+		LRK54_RS16955	0.74	-0.6
3,710,265	+		LRK54_RS16955	0.74	-0.5
3,710,265	+		LRK54_RS16955	0.74	-1.0
3,710,265	+		LRK54_RS16955	0.74	+1.3
3,710,266	-		LRK54_RS16955	0.74	+0.3
3,710,266	-		LRK54_RS16955	0.74	-1.0
3,710,266	-		LRK54_RS16955	0.74	-1.3
3,710,266	-		LRK54_RS16955	0.74	-2.0
3,710,266	-		LRK54_RS16955	0.74	-1.4
3,710,331	+		LRK54_RS16955	0.78	-0.4
3,710,331	+				+2.3
3,710,332	-		LRK54_RS16955	0.78	-0.0
3,710,332	-		LRK54_RS16955	0.78	-1.2
3,710,332	-		LRK54_RS16955	0.78	-2.4
3,710,346	+		LRK54_RS16955	0.79	-0.3
3,710,346	+		LRK54_RS16955	0.79	-1.2
3,710,346	+		LRK54_RS16955	0.79	+0.2
3,710,346	+		LRK54_RS16955	0.79	+1.2
3,710,346	+		LRK54_RS16955	0.79	-1.2
3,710,346	+		LRK54_RS16955	0.79	-0.0
3,710,346	+		LRK54_RS16955	0.79	-0.5
3,710,346	+		LRK54_RS16955	0.79	+1.1
3,710,347	-		LRK54_RS16955	0.79	-1.4
3,710,347	-		LRK54_RS16955	0.79	-0.3
3,710,347	-		LRK54_RS16955	0.79	-0.4
3,710,347	-		LRK54_RS16955	0.79	-1.0
3,710,347	-		LRK54_RS16955	0.79	-1.3
3,710,347	-		LRK54_RS16955	0.79	+0.3
3,710,347	-		LRK54_RS16955	0.79	-2.4
3,710,546	+		LRK54_RS16955	0.90	-1.8
3,710,598	+				+0.6
3,710,598	+				-1.0
3,710,599	-				-0.3
3,710,599	-				-0.0
3,710,710	+				+0.3
3,710,710	+				-0.3
3,710,710	+				-0.9
3,710,710	+				+0.0
3,710,710	+				+0.2
3,710,710	+				+1.2
3,710,710	+				-0.7
3,710,710	+				-0.9
3,710,710	+				-1.1
3,710,710	+				+0.7
3,710,711	-				+1.3
3,710,711	-				-1.4
3,710,711	-				-2.0
3,710,727	+				+0.6
3,710,727	+				-0.2
3,710,727	+				+0.1
3,710,727	+				+0.1
3,710,727	+				+2.0
3,710,727	+				+1.6
3,710,727	+				-0.4
3,710,727	+				+0.7
3,710,727	+				+1.7
3,710,727	+				-0.5
3,710,727	+				+0.7
3,710,727	+				+0.2
3,710,727	+				+0.5
3,710,727	+				+0.8
3,710,728	-				-0.3
3,710,728	-				-0.9
3,710,728	-				-1.8
3,710,728	-				-0.9
3,710,728	-				-1.0
3,710,728	-				-0.9
3,710,728	-				-1.0
3,710,728	-				-0.3
3,710,728	-				-1.5
3,710,728	-				-0.5
3,710,769	+				-2.4
3,710,769	+				-0.2
3,710,769	+				-1.2
3,710,769	+				-1.2
3,710,769	+				-1.0
3,710,769	+				-1.7
3,710,769	+				+1.7
3,710,769	+				-1.5
3,710,769	+				-1.9
3,710,769	+				-1.6
3,710,769	+				-2.1