Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16735

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,666,655	+		LRK54_RS16730	0.40	+1.3
3,666,655	+		LRK54_RS16730	0.40	+2.3
3,666,655	+		LRK54_RS16730	0.40	-0.9
3,666,655	+		LRK54_RS16730	0.40	+0.7
3,666,655	+		LRK54_RS16730	0.40	+1.3
3,666,656	-		LRK54_RS16730	0.40	-2.3
3,666,656	-		LRK54_RS16730	0.40	+2.3
3,666,656	-		LRK54_RS16730	0.40	+0.3
3,666,656	-		LRK54_RS16730	0.40	+0.3
3,666,688	+		LRK54_RS16730	0.42	+1.3
3,666,688	+		LRK54_RS16730	0.42	+0.3
3,666,688	+		LRK54_RS16730	0.42	+0.3
3,666,688	+		LRK54_RS16730	0.42	+0.7
3,666,689	-		LRK54_RS16730	0.43	-0.5
3,666,689	-		LRK54_RS16730	0.43	-0.3
3,666,689	-		LRK54_RS16730	0.43	-0.0
3,666,689	-		LRK54_RS16730	0.43	+1.3
3,666,689	-		LRK54_RS16730	0.43	+0.3
3,666,962	+		LRK54_RS16730	0.64	+0.7
3,666,963	-				+1.3
3,666,963	-		LRK54_RS16730	0.64	-0.3
3,666,998	+		LRK54_RS16730	0.66	-1.5
3,666,998	+		LRK54_RS16730	0.66	+0.7
3,666,998	+		LRK54_RS16730	0.66	-0.5
3,666,999	-		LRK54_RS16730	0.67	-1.0
3,667,294	+		LRK54_RS16730	0.89	-0.5
3,667,295	-		LRK54_RS16730	0.89	-0.3
3,667,295	-		LRK54_RS16730	0.89	+0.7
3,667,369	+				-0.2
3,667,369	+				-1.0
3,667,369	+				+0.3
3,667,369	+				-0.4
3,667,369	+				-0.4
3,667,370	-				-3.0
3,667,370	-				-1.1
3,667,370	-				-0.1
3,667,370	-				-0.7
3,667,370	-				+0.0
3,667,370	-				-0.1
3,667,370	-				-0.6
3,667,378	+				+0.8
3,667,378	+				-1.2
3,667,378	+				-0.8
3,667,378	+				-0.0
3,667,378	+				+0.5
3,667,378	+				+0.3
3,667,378	+				+0.6
3,667,379	-				+0.6
3,667,379	-				-0.6
3,667,379	-				+0.3
3,667,379	-				-0.2
3,667,379	-				-0.5
3,667,379	-				-0.6
3,667,379	-				+0.3
3,667,379	-				+0.5
3,667,379	-				-0.6
3,667,379	-				-0.3
3,667,379	-				-0.2
3,667,379	-				-0.1
3,667,516	+				-0.8
3,667,516	+				-0.9
3,667,516	+				+0.6
3,667,516	+				-0.5
3,667,516	+				-0.3
3,667,516	+				+0.2
3,667,517	-				-0.5
3,667,517	-				-1.5
3,667,517	-				-0.4
3,667,517	-				+0.6
3,667,517	-				-0.1
3,667,517	-				+0.7
3,667,517	-				-0.4
3,667,517	-				+1.0
3,667,517	-				-2.0
3,667,517	-				-1.2
3,667,517	-				-0.1
3,667,517	-				-0.5
3,667,517	-				-0.0
3,667,517	-				-1.4
3,667,517	-				+0.9
3,667,678	+				-2.5
3,667,678	+				-2.5
3,667,679	-				-2.4
3,667,679	-				+0.3
3,667,975	+		LRK54_RS16735	0.15	+0.9
3,667,975	+		LRK54_RS16735	0.15	+0.7
3,667,975	+		LRK54_RS16735	0.15	-0.7
3,667,975	+		LRK54_RS16735	0.15	-0.7
3,667,975	+		LRK54_RS16735	0.15	+1.3
3,667,975	+		LRK54_RS16735	0.15	-0.2
3,667,976	-		LRK54_RS16735	0.15	+0.7
3,667,976	-		LRK54_RS16735	0.15	-1.5
3,667,976	-		LRK54_RS16735	0.15	-2.3
3,667,976	-		LRK54_RS16735	0.15	-0.6
3,667,976	-		LRK54_RS16735	0.15	-0.1
3,667,976	-		LRK54_RS16735	0.15	-0.5
3,667,976	-		LRK54_RS16735	0.15	-0.9
3,668,299	+		LRK54_RS16735	0.28	-0.5
3,668,299	+		LRK54_RS16735	0.28	-1.5
3,668,299	+		LRK54_RS16735	0.28	-0.7
3,668,299	+		LRK54_RS16735	0.28	-1.3
3,668,299	+		LRK54_RS16735	0.28	-1.4
3,668,299	+		LRK54_RS16735	0.28	-0.0
3,668,299	+		LRK54_RS16735	0.28	+0.3
3,668,299	+		LRK54_RS16735	0.28	-0.7
3,668,299	+		LRK54_RS16735	0.28	+0.3
3,668,299	+		LRK54_RS16735	0.28	+0.7
3,668,299	+		LRK54_RS16735	0.28	-0.0
3,668,299	+		LRK54_RS16735	0.28	+1.3
3,668,300	-		LRK54_RS16735	0.28	+1.5
3,668,300	-		LRK54_RS16735	0.28	+0.3
3,668,300	-		LRK54_RS16735	0.28	+1.7
3,668,300	-		LRK54_RS16735	0.28	-0.0
3,668,300	-		LRK54_RS16735	0.28	+0.3
3,668,300	-		LRK54_RS16735	0.28	-2.7
3,668,300	-		LRK54_RS16735	0.28	+0.3
3,668,302	+		LRK54_RS16735	0.28	-1.0
3,668,302	+		LRK54_RS16735	0.28	-0.0
3,668,302	+		LRK54_RS16735	0.28	-0.6
3,668,302	+		LRK54_RS16735	0.28	+0.3
3,668,302	+		LRK54_RS16735	0.28	-2.7
3,668,302	+		LRK54_RS16735	0.28	-1.9
3,668,302	+		LRK54_RS16735	0.28	-1.2
3,668,302	+		LRK54_RS16735	0.28	-2.0
3,668,302	+		LRK54_RS16735	0.28	-0.3
3,668,302	+		LRK54_RS16735	0.28	-0.2
3,668,302	+		LRK54_RS16735	0.28	-1.8
3,668,302	+		LRK54_RS16735	0.28	+0.2
3,668,303	-		LRK54_RS16735	0.28	-1.2
3,668,303	-		LRK54_RS16735	0.28	-0.5
3,668,303	-		LRK54_RS16735	0.28	-2.3
3,668,303	-		LRK54_RS16735	0.28	-0.2
3,668,303	-		LRK54_RS16735	0.28	-0.2
3,668,303	-		LRK54_RS16735	0.28	+0.6
3,668,303	-		LRK54_RS16735	0.28	-2.1
3,668,303	-		LRK54_RS16735	0.28	+0.3
3,668,303	-		LRK54_RS16735	0.28	+1.0
3,668,303	-		LRK54_RS16735	0.28	-1.2
3,668,497	+		LRK54_RS16735	0.36	-0.2
3,668,497	+		LRK54_RS16735	0.36	+0.0
3,668,497	+		LRK54_RS16735	0.36	-1.2
3,668,497	+		LRK54_RS16735	0.36	-2.4
3,668,497	+		LRK54_RS16735	0.36	-1.0
3,668,497	+		LRK54_RS16735	0.36	-1.3
3,668,497	+		LRK54_RS16735	0.36	+0.5
3,668,497	+		LRK54_RS16735	0.36	+0.7
3,668,497	+				+2.3
3,668,497	+		LRK54_RS16735	0.36	-0.7
3,668,497	+		LRK54_RS16735	0.36	-2.4
3,668,498	-		LRK54_RS16735	0.36	-1.0
3,668,498	-		LRK54_RS16735	0.36	-1.3
3,668,498	-		LRK54_RS16735	0.36	-0.5
3,668,498	-		LRK54_RS16735	0.36	-1.7
3,668,498	-		LRK54_RS16735	0.36	+0.7
3,668,498	-		LRK54_RS16735	0.36	+2.3
3,668,498	-		LRK54_RS16735	0.36	+0.5
3,668,498	-		LRK54_RS16735	0.36	+0.3
3,668,498	-		LRK54_RS16735	0.36	-1.0
3,668,498	-		LRK54_RS16735	0.36	-0.7
3,668,498	-		LRK54_RS16735	0.36	-1.1
3,668,498	-		LRK54_RS16735	0.36	-0.3
3,668,498	-		LRK54_RS16735	0.36	+0.3
3,668,498	-		LRK54_RS16735	0.36	+1.3
3,668,498	-		LRK54_RS16735	0.36	-0.0
3,668,498	-		LRK54_RS16735	0.36	+0.3
3,668,498	-		LRK54_RS16735	0.36	-0.8
3,668,498	-		LRK54_RS16735	0.36	-1.6
3,668,498	-		LRK54_RS16735	0.36	-1.6
3,668,626	+		LRK54_RS16735	0.41	-0.8
3,668,626	+		LRK54_RS16735	0.41	-0.0
3,668,627	-		LRK54_RS16735	0.41	-1.4
3,668,627	-		LRK54_RS16735	0.41	-0.9
3,668,627	-		LRK54_RS16735	0.41	-1.0
3,668,627	-		LRK54_RS16735	0.41	+0.7
3,668,627	-		LRK54_RS16735	0.41	-0.3
3,668,627	-		LRK54_RS16735	0.41	+0.6
3,668,627	-		LRK54_RS16735	0.41	-0.9
3,668,627	-		LRK54_RS16735	0.41	+1.3
3,668,649	-		LRK54_RS16735	0.42	-1.4
3,668,809	+		LRK54_RS16735	0.49	-1.2
3,668,809	+		LRK54_RS16735	0.49	+2.3
3,668,809	+		LRK54_RS16735	0.49	-1.0
3,668,809	+		LRK54_RS16735	0.49	-1.0
3,668,809	+		LRK54_RS16735	0.49	-2.0
3,668,809	+		LRK54_RS16735	0.49	-0.7
3,668,809	+		LRK54_RS16735	0.49	-0.3
3,668,809	+		LRK54_RS16735	0.49	-0.5
3,668,809	+		LRK54_RS16735	0.49	-1.4
3,668,809	+		LRK54_RS16735	0.49	-1.4
3,668,809	+		LRK54_RS16735	0.49	-0.2
3,668,809	+		LRK54_RS16735	0.49	+0.3
3,668,809	+		LRK54_RS16735	0.49	-1.0
3,668,809	+		LRK54_RS16735	0.49	-1.3
3,668,809	+		LRK54_RS16735	0.49	+0.1
3,668,809	+		LRK54_RS16735	0.49	-1.0
3,668,809	+		LRK54_RS16735	0.49	-2.0
3,668,809	+		LRK54_RS16735	0.49	-0.9
3,668,809	+		LRK54_RS16735	0.49	-2.5
3,668,809	+		LRK54_RS16735	0.49	-2.2
3,668,809	+		LRK54_RS16735	0.49	-0.9
3,668,809	+		LRK54_RS16735	0.49	+0.9
3,668,809	+		LRK54_RS16735	0.49	+0.1
3,668,809	+		LRK54_RS16735	0.49	-0.1
3,668,809	+		LRK54_RS16735	0.49	-0.5
3,668,809	+		LRK54_RS16735	0.49	-0.9
3,668,809	+		LRK54_RS16735	0.49	+1.7
3,668,809	+		LRK54_RS16735	0.49	-1.6
3,668,809	+		LRK54_RS16735	0.49	-0.0
3,668,809	+		LRK54_RS16735	0.49	-0.4
3,668,809	+		LRK54_RS16735	0.49	-2.0
3,668,809	+		LRK54_RS16735	0.49	-2.8
3,668,809	+		LRK54_RS16735	0.49	-0.9
3,668,809	+		LRK54_RS16735	0.49	-0.9
3,668,809	+		LRK54_RS16735	0.49	-0.6
3,668,809	+		LRK54_RS16735	0.49	+0.9
3,668,809	+		LRK54_RS16735	0.49	-1.4
3,668,809	+		LRK54_RS16735	0.49	+0.7
3,668,809	+		LRK54_RS16735	0.49	+0.5
3,668,809	+		LRK54_RS16735	0.49	+0.6
3,668,809	+		LRK54_RS16735	0.49	-2.4
3,668,809	+		LRK54_RS16735	0.49	-1.4
3,668,809	+		LRK54_RS16735	0.49	+1.7
3,668,809	+		LRK54_RS16735	0.49	+0.3
3,668,809	+		LRK54_RS16735	0.49	-0.0
3,668,809	+		LRK54_RS16735	0.49	-2.0
3,668,809	+		LRK54_RS16735	0.49	-0.5
3,668,809	+		LRK54_RS16735	0.49	-1.6
3,668,809	+		LRK54_RS16735	0.49	-0.0
3,668,809	+		LRK54_RS16735	0.49	-0.7
3,668,809	+		LRK54_RS16735	0.49	-1.0
3,668,809	+		LRK54_RS16735	0.49	-0.7
3,668,809	+		LRK54_RS16735	0.49	-1.3
3,668,809	+		LRK54_RS16735	0.49	-1.0
3,668,809	+		LRK54_RS16735	0.49	-2.8
3,668,810	-		LRK54_RS16735	0.49	-0.7
3,668,810	-		LRK54_RS16735	0.49	+0.7
3,668,810	-		LRK54_RS16735	0.49	-0.7
3,668,810	-		LRK54_RS16735	0.49	-1.9
3,668,810	-		LRK54_RS16735	0.49	-1.5
3,668,810	-		LRK54_RS16735	0.49	-0.9
3,668,810	-		LRK54_RS16735	0.49	-0.7
3,668,810	-		LRK54_RS16735	0.49	-0.2
3,668,810	-		LRK54_RS16735	0.49	+3.3
3,668,810	-		LRK54_RS16735	0.49	-1.3
3,668,810	-		LRK54_RS16735	0.49	-2.8
3,668,810	-		LRK54_RS16735	0.49	+1.0
3,668,810	-		LRK54_RS16735	0.49	-0.0
3,668,810	-		LRK54_RS16735	0.49	-1.5
3,668,810	-		LRK54_RS16735	0.49	+0.3
3,668,810	-		LRK54_RS16735	0.49	+0.4
3,668,810	-		LRK54_RS16735	0.49	-0.7
3,668,810	-		LRK54_RS16735	0.49	+0.3
3,668,810	-		LRK54_RS16735	0.49	+0.7
3,668,810	-		LRK54_RS16735	0.49	-1.0
3,668,810	-		LRK54_RS16735	0.49	-2.1
3,668,810	-		LRK54_RS16735	0.49	+0.1
3,668,810	-		LRK54_RS16735	0.49	-0.3
3,668,810	-		LRK54_RS16735	0.49	+2.3
3,668,810	-		LRK54_RS16735	0.49	-2.3
3,668,810	-		LRK54_RS16735	0.49	-2.1
3,668,810	-		LRK54_RS16735	0.49	-1.0
3,668,810	-		LRK54_RS16735	0.49	-1.3
3,668,810	-		LRK54_RS16735	0.49	-1.2
3,668,810	-		LRK54_RS16735	0.49	-1.5
3,668,810	-		LRK54_RS16735	0.49	+0.7
3,668,810	-		LRK54_RS16735	0.49	-1.3
3,668,810	-		LRK54_RS16735	0.49	-1.5
3,668,810	-		LRK54_RS16735	0.49	+0.3
3,668,810	-		LRK54_RS16735	0.49	-1.2
3,668,810	-		LRK54_RS16735	0.49	-0.9
3,668,810	-		LRK54_RS16735	0.49	+0.3
3,668,810	-		LRK54_RS16735	0.49	-0.4
3,668,810	-		LRK54_RS16735	0.49	-0.8
3,668,812	-		LRK54_RS16735	0.49	+1.3
3,668,983	+		LRK54_RS16735	0.56	+1.9
3,668,983	+		LRK54_RS16735	0.56	-0.5
3,668,983	+		LRK54_RS16735	0.56	-0.9
3,668,983	+		LRK54_RS16735	0.56	+1.0
3,668,983	+		LRK54_RS16735	0.56	+0.9
3,668,983	+		LRK54_RS16735	0.56	+1.5
3,668,984	-		LRK54_RS16735	0.56	-1.0
3,668,984	-		LRK54_RS16735	0.56	-0.5
3,668,984	-		LRK54_RS16735	0.56	+0.7
3,668,984	-		LRK54_RS16735	0.56	-0.7
3,669,028	-		LRK54_RS16735	0.57	-0.6
3,669,094	+		LRK54_RS16735	0.60	-0.5
3,669,094	+		LRK54_RS16735	0.60	-0.7
3,669,094	+		LRK54_RS16735	0.60	-1.0
3,669,130	+		LRK54_RS16735	0.62	-1.6
3,669,130	+		LRK54_RS16735	0.62	-0.4
3,669,130	+		LRK54_RS16735	0.62	-0.3
3,669,130	+		LRK54_RS16735	0.62	-1.5
3,669,130	+		LRK54_RS16735	0.62	-1.0
3,669,130	+		LRK54_RS16735	0.62	+1.3
3,669,130	+		LRK54_RS16735	0.62	-1.6
3,669,130	+		LRK54_RS16735	0.62	-0.1
3,669,130	+		LRK54_RS16735	0.62	-0.3
3,669,130	+		LRK54_RS16735	0.62	-1.4
3,669,130	+		LRK54_RS16735	0.62	-0.3
3,669,130	+		LRK54_RS16735	0.62	-0.5
3,669,130	+		LRK54_RS16735	0.62	-1.2
3,669,130	+		LRK54_RS16735	0.62	-0.5
3,669,130	+		LRK54_RS16735	0.62	-1.5
3,669,130	+		LRK54_RS16735	0.62	+0.2
3,669,130	+		LRK54_RS16735	0.62	+0.9
3,669,130	+		LRK54_RS16735	0.62	-0.0
3,669,130	+		LRK54_RS16735	0.62	-0.7
3,669,130	+		LRK54_RS16735	0.62	-1.4
3,669,130	+		LRK54_RS16735	0.62	-2.1
3,669,130	+		LRK54_RS16735	0.62	-0.8
3,669,130	+		LRK54_RS16735	0.62	-0.7
3,669,131	-		LRK54_RS16735	0.62	-0.2
3,669,131	-		LRK54_RS16735	0.62	+0.1
3,669,131	-		LRK54_RS16735	0.62	-1.5
3,669,131	-		LRK54_RS16735	0.62	-2.5
3,669,131	-		LRK54_RS16735	0.62	+0.3
3,669,131	-		LRK54_RS16735	0.62	-1.6
3,669,131	-		LRK54_RS16735	0.62	-2.9
3,669,131	-		LRK54_RS16735	0.62	-0.5
3,669,131	-		LRK54_RS16735	0.62	-0.8
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