Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16480

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,615,803	+		LRK54_RS16470	0.19	+0.7
3,615,803	+		LRK54_RS16470	0.19	-0.2
3,615,803	+		LRK54_RS16470	0.19	-0.2
3,615,804	-		LRK54_RS16470	0.20	-0.6
3,615,804	-		LRK54_RS16470	0.20	-1.1
3,615,804	-		LRK54_RS16470	0.20	+1.7
3,615,804	-		LRK54_RS16470	0.20	+0.5
3,615,804	-		LRK54_RS16470	0.20	-0.2
3,615,842	+		LRK54_RS16470	0.30	+0.6
3,615,842	+		LRK54_RS16470	0.30	+1.1
3,615,842	+		LRK54_RS16470	0.30	-0.5
3,615,842	+		LRK54_RS16470	0.30	-0.1
3,615,842	+		LRK54_RS16470	0.30	+1.3
3,615,843	-		LRK54_RS16470	0.31	-0.8
3,615,843	-		LRK54_RS16470	0.31	-0.9
3,615,861	+		LRK54_RS16470	0.36	-0.2
3,615,861	+		LRK54_RS16470	0.36	+2.0
3,616,284	+		LRK54_RS16475	0.45	-0.6
3,616,284	+		LRK54_RS16475	0.45	+0.3
3,616,284	+		LRK54_RS16475	0.45	-0.8
3,616,284	+		LRK54_RS16475	0.45	-1.2
3,616,284	+		LRK54_RS16475	0.45	-0.9
3,616,284	+		LRK54_RS16475	0.45	+0.6
3,616,284	+		LRK54_RS16475	0.45	-0.7
3,616,284	+		LRK54_RS16475	0.45	-0.6
3,616,285	-		LRK54_RS16475	0.45	-0.9
3,616,308	+		LRK54_RS16475	0.50	+0.3
3,616,309	-		LRK54_RS16475	0.50	+2.3
3,616,309	-		LRK54_RS16475	0.50	+0.3
3,616,309	-		LRK54_RS16475	0.50	-1.2
3,616,309	-		LRK54_RS16475	0.50	-0.9
3,616,383	+		LRK54_RS16475	0.65	-0.5
3,616,383	+		LRK54_RS16475	0.65	-0.3
3,616,383	+		LRK54_RS16475	0.65	-0.7
3,616,384	-		LRK54_RS16475	0.66	-1.0
3,616,473	+		LRK54_RS16475	0.84	-0.1
3,616,566	+				-0.9
3,616,566	+				-1.4
3,616,566	+				-0.9
3,616,566	+				-0.2
3,616,566	+				-2.6
3,616,566	+				-0.2
3,616,566	+				+2.0
3,616,567	-				-1.7
3,616,567	-				-0.4
3,616,567	-				-0.4
3,616,567	-				-1.6
3,616,567	-				-0.7
3,616,567	-				+0.7
3,616,567	-				-1.5
3,616,567	-				-0.9
3,616,567	-				+0.7
3,616,567	-				+0.1
3,616,567	-				-0.6
3,616,567	-				-0.1
3,616,567	-				-0.6
3,616,567	-				+0.7
3,616,567	-				+0.3
3,616,567	-				+0.7
3,616,603	-				-0.2
3,616,671	+				-0.3
3,616,775	-		LRK54_RS16480	0.13	-0.8
3,616,845	+		LRK54_RS16480	0.21	+2.0
3,616,845	+		LRK54_RS16480	0.21	-0.5
3,616,846	-		LRK54_RS16480	0.21	-1.0
3,616,846	-		LRK54_RS16480	0.21	+0.8
3,616,846	-		LRK54_RS16480	0.21	+0.3
3,616,846	-		LRK54_RS16480	0.21	+0.0
3,616,846	-		LRK54_RS16480	0.21	+0.2
3,616,846	-		LRK54_RS16480	0.21	+2.5
3,616,846	-		LRK54_RS16480	0.21	-2.0
3,616,846	-		LRK54_RS16480	0.21	+1.5
3,616,846	-		LRK54_RS16480	0.21	+1.3
3,616,846	-		LRK54_RS16480	0.21	-0.3
3,616,846	-		LRK54_RS16480	0.21	+0.4
3,617,367	+		LRK54_RS16480	0.84	-1.6
3,617,367	+		LRK54_RS16480	0.84	+2.3
3,617,367	+		LRK54_RS16480	0.84	-0.4
3,617,367	+		LRK54_RS16480	0.84	-0.9
3,617,367	+		LRK54_RS16480	0.84	+0.7
3,617,367	+		LRK54_RS16480	0.84	-1.4
3,617,367	+		LRK54_RS16480	0.84	-1.6
3,617,368	-		LRK54_RS16480	0.84	+0.1
3,617,368	-		LRK54_RS16480	0.84	+0.9
3,617,368	-		LRK54_RS16480	0.84	-0.9
3,617,368	-		LRK54_RS16480	0.84	-1.3
3,617,368	-		LRK54_RS16480	0.84	-0.5
3,617,368	-		LRK54_RS16480	0.84	+0.3
3,617,368	-		LRK54_RS16480	0.84	+0.3
3,617,412	+		LRK54_RS16480	0.89	+0.6
3,617,413	-		LRK54_RS16480	0.89	-0.0
3,617,512	+				+0.3
3,617,512	+				-0.7
3,617,512	+				-0.4
3,617,513	-				-1.4
3,617,574	+				-0.2
3,617,574	+				-0.2
3,617,574	+				-0.7
3,617,574	+				-0.5
3,617,574	+				-0.6
3,617,574	+				-0.9
3,617,574	+				-1.1
3,617,574	+				-0.2
3,617,574	+				+0.1
3,617,574	+				+0.7
3,617,574	+				-0.5
3,617,574	+				+1.3
3,617,574	+				-1.1
3,617,574	+				-3.2
3,617,574	+				+0.4
3,617,574	+				-0.8
3,617,574	+				-0.9
3,617,574	+				+0.0
3,617,574	+				-2.0
3,617,574	+				+0.7
3,617,574	+				-1.2
3,617,574	+				-1.0
3,617,574	+				-0.9
3,617,574	+				-0.4
3,617,574	+				-0.1
3,617,575	-				+0.1
3,617,575	-				+0.6
3,617,575	-				-0.9
3,617,575	-				+0.5
3,617,575	-				-0.5
3,617,575	-				+1.3
3,617,575	-				-1.3
3,617,575	-				+0.8
3,617,575	-				+0.2
3,617,575	-				-0.9
3,617,575	-				+0.2
3,617,575	-				-0.5
3,617,575	-				+1.0
3,617,575	-				+0.8
3,617,575	-				-0.6
3,617,575	-				+0.1
3,617,575	-				-0.5
3,617,575	-				+1.3
3,617,596	+				+0.2
3,617,596	+				+0.7
3,617,596	+				-1.1
3,617,596	+				-0.3
3,617,596	+				+0.7
3,617,597	-				+0.2
3,617,796	+				-0.4
3,617,796	+				-0.9
3,617,796	+				-0.4
3,617,797	-				-1.5
3,617,797	-				-1.4
3,617,805	+		LRK54_RS16485	0.10	-0.0
3,617,805	+		LRK54_RS16485	0.10	-0.2
3,617,805	+		LRK54_RS16485	0.10	-0.9
3,617,806	-		LRK54_RS16485	0.10	-0.7
3,617,806	-		LRK54_RS16485	0.10	-0.7
3,617,806	-		LRK54_RS16485	0.10	-0.6
3,618,013	-		LRK54_RS16485	0.24	-0.1
3,618,054	+		LRK54_RS16485	0.27	-0.2
3,618,054	+		LRK54_RS16485	0.27	+0.2
3,618,054	+		LRK54_RS16485	0.27	+0.3
3,618,055	-		LRK54_RS16485	0.27	-0.1
3,618,055	-		LRK54_RS16485	0.27	+0.5
3,618,087	+		LRK54_RS16485	0.29	-0.5
3,618,087	+		LRK54_RS16485	0.29	-0.6
3,618,087	+		LRK54_RS16485	0.29	+0.1
3,618,087	+		LRK54_RS16485	0.29	-0.1
3,618,087	+		LRK54_RS16485	0.29	-0.5
3,618,088	-		LRK54_RS16485	0.29	+0.2
3,618,088	-		LRK54_RS16485	0.29	-1.2
3,618,088	-		LRK54_RS16485	0.29	-0.3
3,618,088	-		LRK54_RS16485	0.29	-0.4
3,618,088	-		LRK54_RS16485	0.29	-1.3
3,618,088	-		LRK54_RS16485	0.29	-2.0
3,618,088	-		LRK54_RS16485	0.29	-0.2
3,618,138	+		LRK54_RS16485	0.33	-0.5
3,618,138	+		LRK54_RS16485	0.33	+1.3
3,618,138	+		LRK54_RS16485	0.33	-0.6
3,618,138	+		LRK54_RS16485	0.33	-0.9
3,618,138	+		LRK54_RS16485	0.33	+1.4
3,618,138	+		LRK54_RS16485	0.33	-0.2
3,618,138	+		LRK54_RS16485	0.33	+0.4
3,618,139	-		LRK54_RS16485	0.33	-0.2
3,618,139	-		LRK54_RS16485	0.33	-0.7
3,618,139	-		LRK54_RS16485	0.33	-0.9
3,618,139	-		LRK54_RS16485	0.33	+1.7
3,618,139	-		LRK54_RS16485	0.33	+0.9
3,618,139	-		LRK54_RS16485	0.33	+0.0
3,618,139	-		LRK54_RS16485	0.33	-1.4
3,618,139	-		LRK54_RS16485	0.33	+0.4
3,618,140	+		LRK54_RS16485	0.33	-0.2
3,618,141	-		LRK54_RS16485	0.33	+0.3
3,618,141	-		LRK54_RS16485	0.33	+0.7
3,618,213	+		LRK54_RS16485	0.38	+0.4
3,618,213	+		LRK54_RS16485	0.38	-1.4
3,618,213	+		LRK54_RS16485	0.38	-0.7
3,618,213	+		LRK54_RS16485	0.38	-0.1
3,618,214	-		LRK54_RS16485	0.38	-0.0
3,618,214	-		LRK54_RS16485	0.38	+0.3
3,618,214	-		LRK54_RS16485	0.38	-1.1
3,618,214	-		LRK54_RS16485	0.38	+0.2
3,618,214	-		LRK54_RS16485	0.38	-1.2
3,618,292	-		LRK54_RS16485	0.43	-0.5
3,618,327	+		LRK54_RS16485	0.45	-0.3
3,618,327	+		LRK54_RS16485	0.45	+0.7
3,618,327	+		LRK54_RS16485	0.45	-1.3
3,618,327	+		LRK54_RS16485	0.45	-2.1
3,618,327	+		LRK54_RS16485	0.45	-0.5
3,618,327	+		LRK54_RS16485	0.45	-0.5
3,618,327	+		LRK54_RS16485	0.45	+1.4
3,618,327	+		LRK54_RS16485	0.45	-0.1
3,618,327	+		LRK54_RS16485	0.45	+0.8
3,618,327	+		LRK54_RS16485	0.45	-0.0
3,618,327	+		LRK54_RS16485	0.45	-0.7
3,618,327	+		LRK54_RS16485	0.45	+0.3
3,618,327	+		LRK54_RS16485	0.45	+0.8
3,618,327	+		LRK54_RS16485	0.45	-0.9
3,618,327	+		LRK54_RS16485	0.45	-1.2
3,618,327	+		LRK54_RS16485	0.45	-1.2
3,618,328	-		LRK54_RS16485	0.45	+0.6
3,618,328	-		LRK54_RS16485	0.45	+2.7
3,618,328	-		LRK54_RS16485	0.45	-0.7
3,618,328	-		LRK54_RS16485	0.45	-1.3
3,618,328	-		LRK54_RS16485	0.45	+0.3
3,618,328	-		LRK54_RS16485	0.45	-0.1
3,618,328	-		LRK54_RS16485	0.45	+0.7
3,618,328	-		LRK54_RS16485	0.45	+0.6
3,618,328	-		LRK54_RS16485	0.45	+3.6
3,618,328	-		LRK54_RS16485	0.45	-0.2
3,618,328	-		LRK54_RS16485	0.45	+1.3
3,618,328	-		LRK54_RS16485	0.45	-0.2
3,618,328	-		LRK54_RS16485	0.45	+0.0
3,618,328	-		LRK54_RS16485	0.45	-1.1
3,618,328	-		LRK54_RS16485	0.45	+0.8