Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16355

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,597,217	+		LRK54_RS16345	0.85	-0.5
3,597,217	+		LRK54_RS16345	0.85	+1.7
3,597,217	+		LRK54_RS16345	0.85	-0.8
3,597,217	+		LRK54_RS16345	0.85	-0.9
3,597,218	-		LRK54_RS16345	0.85	+0.4
3,597,218	-		LRK54_RS16345	0.85	-0.6
3,597,375	+				+0.2
3,597,375	+				+0.7
3,597,375	+				+1.3
3,597,375	+				+0.1
3,597,375	+				-0.2
3,597,375	+				-0.5
3,597,375	+				-0.5
3,597,375	+				+0.0
3,597,375	+				+0.9
3,597,375	+				+1.3
3,597,376	-				-0.9
3,597,376	-				-2.1
3,597,405	+				-0.7
3,597,405	+				-0.5
3,597,405	+				-0.3
3,597,405	+				-1.2
3,597,405	+				-0.5
3,597,405	+				+0.4
3,597,405	+				-1.1
3,597,405	+				+0.4
3,597,405	+				+0.1
3,597,405	+				-0.9
3,597,405	+				-0.2
3,597,405	+				-1.1
3,597,406	-				+1.6
3,597,406	-				-0.3
3,597,406	-				-0.2
3,597,406	-				-0.5
3,597,406	-				+1.3
3,597,406	-				-0.4
3,597,406	-				-0.6
3,597,406	-				-0.4
3,597,406	-				+0.2
3,597,406	-				+0.9
3,597,406	-				+0.7
3,597,406	-				-1.1
3,597,406	-				+0.1
3,597,406	-				-0.1
3,597,406	-				-0.8
3,597,466	+				+0.1
3,597,466	+				+0.0
3,597,467	-				-0.1
3,597,467	-				+1.5
3,597,476	+				-1.1
3,597,476	+				+0.7
3,597,476	+				-0.9
3,597,476	+				-0.4
3,597,524	+				+0.9
3,597,524	+				-1.4
3,597,524	+				+1.1
3,597,524	+				-1.2
3,597,524	+				+0.5
3,597,524	+				-0.7
3,597,525	-				+0.3
3,597,525	-				-0.5
3,597,547	+				-0.5
3,597,547	+				-0.5
3,597,548	-				-1.5
3,597,679	+		LRK54_RS16350	0.26	-0.3
3,597,679	+		LRK54_RS16350	0.26	-0.6
3,597,680	-		LRK54_RS16350	0.26	+0.7
3,597,680	-		LRK54_RS16350	0.26	-0.3
3,597,680	-		LRK54_RS16350	0.26	-0.9
3,597,680	-		LRK54_RS16350	0.26	+1.0
3,597,834	+		LRK54_RS16350	0.69	+0.3
3,597,931	+				+0.5
3,597,931	+				-0.5
3,597,931	+				-0.2
3,597,931	+				-1.3
3,597,932	-				+0.0
3,597,932	-				-0.7
3,597,932	-				-1.7
3,597,932	-				-0.3
3,597,932	-				-0.1
3,598,043	+				-0.3
3,598,068	+				-1.5
3,598,139	+				+0.2
3,598,139	+				-0.1
3,598,139	+				+0.0
3,598,140	-				-0.3
3,598,248	+				+0.3
3,598,248	+				-0.2
3,598,248	+				-0.3
3,598,249	-				-1.3
3,598,249	-				-0.2
3,598,249	-				-1.4
3,598,288	+		LRK54_RS16355	0.11	+1.8
3,598,288	+		LRK54_RS16355	0.11	+1.7
3,598,288	+		LRK54_RS16355	0.11	+0.3
3,598,289	-		LRK54_RS16355	0.11	-0.6
3,598,289	-		LRK54_RS16355	0.11	-0.6
3,598,289	-		LRK54_RS16355	0.11	+0.3
3,598,296	+		LRK54_RS16355	0.12	-1.8
3,598,296	+		LRK54_RS16355	0.12	+0.6
3,598,296	+		LRK54_RS16355	0.12	-0.9
3,598,296	+		LRK54_RS16355	0.12	-0.8
3,598,296	+		LRK54_RS16355	0.12	+0.1
3,598,296	+		LRK54_RS16355	0.12	-0.2
3,598,296	+		LRK54_RS16355	0.12	+1.3
3,598,297	-		LRK54_RS16355	0.13	-1.1
3,598,297	-		LRK54_RS16355	0.13	-0.6
3,598,297	-		LRK54_RS16355	0.13	+1.3
3,598,297	-		LRK54_RS16355	0.13	-0.0
3,598,297	-		LRK54_RS16355	0.13	-0.6
3,598,297	-		LRK54_RS16355	0.13	+0.6
3,598,297	-		LRK54_RS16355	0.13	+0.3
3,598,297	-		LRK54_RS16355	0.13	+1.1
3,598,297	-		LRK54_RS16355	0.13	-0.6
3,598,297	-		LRK54_RS16355	0.13	+0.2
3,598,693	+		LRK54_RS16355	0.69	-0.1
3,598,693	+		LRK54_RS16355	0.69	+0.5
3,598,693	+		LRK54_RS16355	0.69	+0.9
3,598,693	+		LRK54_RS16355	0.69	+0.8
3,598,836	+		LRK54_RS16355	0.89	+0.7
3,598,836	+		LRK54_RS16355	0.89	-0.2
3,598,836	+		LRK54_RS16355	0.89	+0.7
3,598,836	+		LRK54_RS16355	0.89	+0.0
3,598,837	-		LRK54_RS16355	0.89	-0.3
3,598,908	+				-0.3
3,598,908	+				-0.1
3,598,908	+				+0.3
3,598,908	+				-0.3
3,598,908	+				-0.6
3,598,908	+				-0.5
3,598,908	+				+0.2
3,598,908	+				+1.9
3,598,908	+				+0.7
3,598,908	+				-0.1
3,598,909	-				+0.3
3,598,909	-				+0.7
3,598,909	-				+1.1
3,598,909	-				-0.2
3,598,909	-				-0.9
3,598,909	-				-0.5
3,598,909	-				-0.3
3,598,947	+				+1.7
3,598,947	+				-1.1
3,598,947	+				+0.9
3,598,948	-				+1.0
3,598,948	-				+0.4
3,598,948	-				-0.4
3,598,948	-				-0.3
3,598,948	-				+0.1
3,599,100	+		LRK54_RS16360	0.54	+1.0
3,599,101	-		LRK54_RS16360	0.54	-1.1
3,599,445	+				-1.4
3,599,445	+				+0.4
3,599,445	+				+0.2
3,599,445	+				+0.3
3,599,446	-				-0.3
3,599,446	-				+0.5
3,599,446	-				+0.2
3,599,446	-				-0.1
3,599,446	-				+0.4
3,599,446	-				+1.1
3,599,446	-				-0.7
3,599,475	+		LRK54_RS16365	0.11	-1.7
3,599,475	+		LRK54_RS16365	0.11	+0.2
3,599,475	+		LRK54_RS16365	0.11	-0.9
3,599,475	+		LRK54_RS16365	0.11	+0.8
3,599,475	+		LRK54_RS16365	0.11	-1.2
3,599,475	+		LRK54_RS16365	0.11	+0.5
3,599,475	+		LRK54_RS16365	0.11	+0.1
3,599,475	+		LRK54_RS16365	0.11	+2.7
3,599,475	+		LRK54_RS16365	0.11	+0.4
3,599,475	+		LRK54_RS16365	0.11	-0.2
3,599,475	+		LRK54_RS16365	0.11	-0.8
3,599,475	+		LRK54_RS16365	0.11	-0.6
3,599,475	+		LRK54_RS16365	0.11	+0.6
3,599,475	+		LRK54_RS16365	0.11	-0.1
3,599,476	-		LRK54_RS16365	0.11	-1.0
3,599,476	-		LRK54_RS16365	0.11	-1.6
3,599,476	-		LRK54_RS16365	0.11	+0.0
3,599,476	-		LRK54_RS16365	0.11	+0.6
3,599,476	-		LRK54_RS16365	0.11	-0.1
3,599,476	-		LRK54_RS16365	0.11	+0.4
3,599,476	-		LRK54_RS16365	0.11	-0.3
3,599,476	-		LRK54_RS16365	0.11	+1.8
3,599,476	-		LRK54_RS16365	0.11	-1.1
3,599,476	-		LRK54_RS16365	0.11	-0.6
3,599,643	+		LRK54_RS16365	0.58	-0.8
3,599,643	+		LRK54_RS16365	0.58	+0.2
3,599,643	+		LRK54_RS16365	0.58	-0.7
3,599,643	+		LRK54_RS16365	0.58	-0.3
3,599,643	+		LRK54_RS16365	0.58	+0.8
3,599,643	+		LRK54_RS16365	0.58	-0.6
3,599,643	+		LRK54_RS16365	0.58	+0.6
3,599,643	+		LRK54_RS16365	0.58	-0.3
3,599,643	+		LRK54_RS16365	0.58	+1.1
3,599,643	+		LRK54_RS16365	0.58	-1.7
3,599,643	+		LRK54_RS16365	0.58	+0.3
3,599,643	+		LRK54_RS16365	0.58	-0.2
3,599,643	+		LRK54_RS16365	0.58	+1.3
3,599,643	+		LRK54_RS16365	0.58	-0.6
3,599,643	+		LRK54_RS16365	0.58	-1.9
3,599,643	+		LRK54_RS16365	0.58	+0.1
3,599,643	+		LRK54_RS16365	0.58	-0.7
3,599,643	+		LRK54_RS16365	0.58	-0.6
3,599,644	-		LRK54_RS16365	0.59	+0.7
3,599,644	-		LRK54_RS16365	0.59	+0.5
3,599,644	-		LRK54_RS16365	0.59	-0.3
3,599,644	-		LRK54_RS16365	0.59	-1.2
3,599,644	-		LRK54_RS16365	0.59	-0.0
3,599,644	-		LRK54_RS16365	0.59	+0.8
3,599,644	-		LRK54_RS16365	0.59	+0.9
3,599,644	-		LRK54_RS16365	0.59	-0.3
3,599,644	-		LRK54_RS16365	0.59	+1.3
3,599,644	-		LRK54_RS16365	0.59	-0.2
3,599,644	-		LRK54_RS16365	0.59	-2.1
3,599,644	-		LRK54_RS16365	0.59	-0.4
3,599,644	-		LRK54_RS16365	0.59	+0.5
3,599,644	-		LRK54_RS16365	0.59	-0.7
3,599,644	-		LRK54_RS16365	0.59	-1.4
3,599,644	-		LRK54_RS16365	0.59	+0.3
3,599,644	-		LRK54_RS16365	0.59	+0.8
3,599,644	-		LRK54_RS16365	0.59	-0.6
3,599,644	-		LRK54_RS16365	0.59	+0.4
3,599,644	-		LRK54_RS16365	0.59	+0.6
3,599,644	-		LRK54_RS16365	0.59	+0.8
3,599,644	-		LRK54_RS16365	0.59	-1.7
3,599,644	-		LRK54_RS16365	0.59	-0.7
3,599,644	-		LRK54_RS16365	0.59	+0.2
3,599,644	-		LRK54_RS16365	0.59	+0.8
3,599,661	+		LRK54_RS16365	0.64	-1.7
3,599,661	+		LRK54_RS16365	0.64	-0.3
3,599,661	+		LRK54_RS16365	0.64	+0.0
3,599,661	+		LRK54_RS16365	0.64	+0.3
3,599,661	+		LRK54_RS16365	0.64	+1.7
3,599,661	+		LRK54_RS16365	0.64	-1.9
3,599,661	+		LRK54_RS16365	0.64	+0.1
3,599,661	+		LRK54_RS16365	0.64	+0.4
3,599,661	+		LRK54_RS16365	0.64	+0.4
3,599,661	+		LRK54_RS16365	0.64	+0.1
3,599,661	+		LRK54_RS16365	0.64	+0.2
3,599,661	+		LRK54_RS16365	0.64	+0.4
3,599,661	+		LRK54_RS16365	0.64	+1.0
3,599,661	+		LRK54_RS16365	0.64	-0.4
3,599,661	+		LRK54_RS16365	0.64	+1.0
3,599,661	+		LRK54_RS16365	0.64	+0.2
3,599,662	-		LRK54_RS16365	0.64	-1.7
3,599,662	-		LRK54_RS16365	0.64	-0.8
3,599,662	-		LRK54_RS16365	0.64	-0.1
3,599,662	-		LRK54_RS16365	0.64	+1.1
3,599,662	-		LRK54_RS16365	0.64	-0.4
3,599,662	-		LRK54_RS16365	0.64	-0.0
3,599,662	-		LRK54_RS16365	0.64	+1.7
3,599,662	-		LRK54_RS16365	0.64	-3.1
3,599,662	-		LRK54_RS16365	0.64	+0.3
3,599,662	-		LRK54_RS16365	0.64	+0.3
3,599,662	-		LRK54_RS16365	0.64	+0.0
3,599,662	-		LRK54_RS16365	0.64	+0.1
3,599,662	-		LRK54_RS16365	0.64	+1.6
3,599,662	-		LRK54_RS16365	0.64	-0.0
3,599,662	-		LRK54_RS16365	0.64	-0.9
3,599,680	+		LRK54_RS16365	0.69	-0.1
3,599,681	-		LRK54_RS16365	0.69	+0.7
3,599,787	+				+0.4
3,599,788	-				-0.2
3,599,788	-				-1.2
3,599,788	-				-0.5
3,599,788	-				+1.6
3,599,788	-				+0.9
3,599,788	-				+0.7
3,599,788	-				+0.2
3,599,898	+		LRK54_RS16370	0.13	-0.3
3,599,898	+		LRK54_RS16370	0.13	-1.2
3,599,899	-		LRK54_RS16370	0.14	-1.9
3,599,899	-		LRK54_RS16370	0.14	-0.2
3,599,900	+		LRK54_RS16370	0.14	-1.8
3,599,900	+		LRK54_RS16370	0.14	-1.6
3,599,900	+		LRK54_RS16370	0.14	+0.0
3,599,901	-		LRK54_RS16370	0.14	+0.5
3,599,901	-		LRK54_RS16370	0.14	+0.8
3,599,901	-		LRK54_RS16370	0.14	+0.2
3,599,901	-		LRK54_RS16370	0.14	+0.1
3,599,901	-		LRK54_RS16370	0.14	+1.8
3,599,901	-		LRK54_RS16370	0.14	-0.1