Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16315

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,587,436	+		LRK54_RS16305	0.90	-0.3
3,587,436	+		LRK54_RS16305	0.90	-0.3
3,587,436	+		LRK54_RS16305	0.90	+0.4
3,587,436	+		LRK54_RS16305	0.90	-0.4
3,587,436	+		LRK54_RS16305	0.90	-0.4
3,587,437	-		LRK54_RS16305	0.90	+0.3
3,587,437	-		LRK54_RS16305	0.90	+0.3
3,587,628	+				+0.6
3,587,628	+				-0.4
3,587,628	+				-0.1
3,587,628	+				+1.5
3,587,628	+				-0.2
3,587,628	+				+0.8
3,587,628	+				-1.1
3,587,629	-				-0.0
3,587,629	-				+1.1
3,587,629	-				+0.3
3,587,710	+		LRK54_RS16310	0.15	-0.6
3,587,710	+		LRK54_RS16310	0.15	-0.3
3,587,711	-		LRK54_RS16310	0.16	+0.7
3,587,711	-		LRK54_RS16310	0.16	-1.0
3,587,746	+		LRK54_RS16310	0.25	+2.7
3,587,746	+		LRK54_RS16310	0.25	+0.3
3,587,746	+		LRK54_RS16310	0.25	+0.3
3,587,747	-		LRK54_RS16310	0.25	-0.3
3,587,747	-		LRK54_RS16310	0.25	+0.4
3,587,747	-		LRK54_RS16310	0.25	+1.3
3,587,747	-		LRK54_RS16310	0.25	+0.2
3,587,747	-		LRK54_RS16310	0.25	+3.3
3,587,862	+		LRK54_RS16310	0.56	-0.1
3,587,862	+		LRK54_RS16310	0.56	+0.8
3,587,862	+		LRK54_RS16310	0.56	-0.7
3,587,862	+		LRK54_RS16310	0.56	-0.5
3,587,863	-		LRK54_RS16310	0.56	-2.2
3,587,863	-		LRK54_RS16310	0.56	+0.5
3,587,863	-		LRK54_RS16310	0.56	+0.8
3,587,938	+		LRK54_RS16310	0.76	+0.5
3,587,938	+		LRK54_RS16310	0.76	+0.4
3,587,938	+		LRK54_RS16310	0.76	-0.1
3,587,938	+		LRK54_RS16310	0.76	-0.4
3,587,939	-		LRK54_RS16310	0.76	-1.9
3,587,955	+		LRK54_RS16310	0.80	-0.7
3,587,955	+		LRK54_RS16310	0.80	-1.5
3,587,955	+		LRK54_RS16310	0.80	-0.3
3,587,955	+		LRK54_RS16310	0.80	+0.1
3,587,955	+		LRK54_RS16310	0.80	-0.5
3,587,955	+		LRK54_RS16310	0.80	+0.5
3,587,956	-		LRK54_RS16310	0.80	-2.3
3,587,956	-		LRK54_RS16310	0.80	-1.4
3,587,956	-		LRK54_RS16310	0.80	-0.9
3,587,956	-		LRK54_RS16310	0.80	+0.3
3,588,073	+				+0.3
3,588,073	+				-0.3
3,588,073	+				+0.1
3,588,073	+				-0.3
3,588,102	+				+0.4
3,588,102	+				-0.3
3,588,102	+				-1.7
3,588,102	+				-0.4
3,588,102	+				-1.9
3,588,102	+				+0.0
3,588,102	+				+0.0
3,588,102	+				-0.9
3,588,102	+				+1.2
3,588,102	+				-0.2
3,588,103	-				-1.0
3,588,103	-				-0.1
3,588,103	-				+1.6
3,588,103	-				+0.3
3,588,103	-				-2.0
3,588,103	-				-1.5
3,588,103	-				+1.0
3,588,103	-				-1.0
3,588,103	-				+0.3
3,588,103	-				-1.1
3,588,103	-				+1.0
3,588,103	-				+1.8
3,588,103	-				+0.3
3,588,103	-				-0.3
3,588,103	-				-0.1
3,588,103	-				+0.3
3,588,103	-				+1.7
3,588,103	-				+0.3
3,588,107	+				+2.3
3,588,107	+				+0.2
3,588,107	+				+1.0
3,588,107	+				-2.0
3,588,107	+				-1.0
3,588,107	+				-0.2
3,588,107	+				-1.4
3,588,107	+				+0.4
3,588,107	+				+0.9
3,588,107	+				-0.2
3,588,107	+				+0.2
3,588,107	+				+1.1
3,588,108	-				+0.3
3,588,108	-				-0.9
3,588,108	-				-1.8
3,588,108	-				+1.1
3,588,108	-				-0.6
3,588,108	-				-0.3
3,588,108	-				+0.2
3,588,108	-				-0.5
3,588,217	+				+0.5
3,588,217	+				-0.0
3,588,217	+				-0.1
3,588,217	+				+0.4
3,588,217	+				+2.3
3,588,217	+				-0.4
3,588,217	+				-0.9
3,588,217	+				+0.3
3,588,217	+				+0.7
3,588,217	+				-0.2
3,588,218	-				+0.3
3,588,218	-				-1.3
3,588,218	-				-0.7
3,588,218	-				+0.3
3,588,218	-				-0.3
3,588,218	-				+0.1
3,588,218	-				+0.1
3,588,218	-				+0.8
3,588,218	-				+0.4
3,588,218	-				-1.2
3,588,218	-				+0.9
3,588,218	-				-1.2
3,588,218	-				-0.7
3,588,218	-				+0.7
3,588,218	-				-1.3
3,588,218	-				+1.1
3,588,218	-				+0.7
3,588,218	-				+0.6
3,588,427	+		LRK54_RS16315	0.22	+0.6
3,588,427	+		LRK54_RS16315	0.22	-0.1
3,588,427	+		LRK54_RS16315	0.22	+0.3
3,588,427	+		LRK54_RS16315	0.22	+0.6
3,588,427	+		LRK54_RS16315	0.22	+1.5
3,588,427	+		LRK54_RS16315	0.22	-0.3
3,588,428	-		LRK54_RS16315	0.23	-0.1
3,588,428	-		LRK54_RS16315	0.23	-0.7
3,588,428	-		LRK54_RS16315	0.23	-0.2
3,588,428	-		LRK54_RS16315	0.23	+0.8
3,588,428	-		LRK54_RS16315	0.23	+0.3
3,588,620	+		LRK54_RS16315	0.37	-1.4
3,588,620	+		LRK54_RS16315	0.37	+0.3
3,588,620	+		LRK54_RS16315	0.37	+0.8
3,588,620	+		LRK54_RS16315	0.37	+1.5
3,588,621	-		LRK54_RS16315	0.37	-1.1
3,588,788	+		LRK54_RS16315	0.50	+0.1
3,588,788	+		LRK54_RS16315	0.50	+1.5
3,588,788	+		LRK54_RS16315	0.50	-0.2
3,588,788	+		LRK54_RS16315	0.50	+0.1
3,588,788	+		LRK54_RS16315	0.50	-1.8
3,588,789	-		LRK54_RS16315	0.50	+0.7
3,588,789	-		LRK54_RS16315	0.50	+1.0
3,588,789	-		LRK54_RS16315	0.50	-0.3
3,588,789	-		LRK54_RS16315	0.50	+0.5
3,588,789	-		LRK54_RS16315	0.50	-1.0
3,588,862	+		LRK54_RS16315	0.56	+0.2
3,588,862	+		LRK54_RS16315	0.56	-0.3
3,588,862	+		LRK54_RS16315	0.56	-0.5
3,588,936	+		LRK54_RS16315	0.61	+0.2
3,588,936	+		LRK54_RS16315	0.61	+0.1
3,588,936	+		LRK54_RS16315	0.61	+2.3
3,588,936	+		LRK54_RS16315	0.61	-0.1
3,588,936	+				-0.3
3,588,936	+		LRK54_RS16315	0.61	+0.9
3,588,937	-		LRK54_RS16315	0.61	-0.5
3,588,937	-		LRK54_RS16315	0.61	-1.8
3,588,937	-		LRK54_RS16315	0.61	-0.1
3,588,937	-		LRK54_RS16315	0.61	-1.4
3,588,937	-		LRK54_RS16315	0.61	+0.3
3,589,204	+		LRK54_RS16315	0.82	+0.4
3,589,204	+		LRK54_RS16315	0.82	-0.1
3,589,204	+		LRK54_RS16315	0.82	-0.4
3,589,204	+		LRK54_RS16315	0.82	-1.2
3,589,204	+		LRK54_RS16315	0.82	-0.5
3,589,204	+		LRK54_RS16315	0.82	+0.8
3,589,204	+		LRK54_RS16315	0.82	+0.5
3,589,204	+		LRK54_RS16315	0.82	-0.1
3,589,204	+		LRK54_RS16315	0.82	-0.5
3,589,204	+		LRK54_RS16315	0.82	+1.3
3,589,204	+		LRK54_RS16315	0.82	+1.2
3,589,204	+		LRK54_RS16315	0.82	-1.2
3,589,205	-		LRK54_RS16315	0.82	-1.4
3,589,205	-		LRK54_RS16315	0.82	-0.4
3,589,205	-		LRK54_RS16315	0.82	-0.4
3,589,205	-		LRK54_RS16315	0.82	+1.8
3,589,205	-		LRK54_RS16315	0.82	-0.7
3,589,205	-		LRK54_RS16315	0.82	+0.4
3,589,276	+		LRK54_RS16315	0.87	+0.7
3,589,276	+		LRK54_RS16315	0.87	+1.1
3,589,276	+		LRK54_RS16315	0.87	+0.5
3,589,276	+		LRK54_RS16315	0.87	+0.3
3,589,276	+		LRK54_RS16315	0.87	-1.1
3,589,276	+		LRK54_RS16315	0.87	+0.3
3,589,276	+		LRK54_RS16315	0.87	+0.9
3,589,276	+		LRK54_RS16315	0.87	+0.9
3,589,276	+		LRK54_RS16315	0.87	-0.1
3,589,277	-		LRK54_RS16315	0.87	+0.5
3,589,277	-		LRK54_RS16315	0.87	+1.3
3,589,277	-		LRK54_RS16315	0.87	-0.5
3,589,277	-		LRK54_RS16315	0.87	-0.2
3,589,277	-		LRK54_RS16315	0.87	+0.1
3,589,277	-		LRK54_RS16315	0.87	+2.0
3,589,277	-		LRK54_RS16315	0.87	+0.6
3,589,277	-		LRK54_RS16315	0.87	+1.7
3,589,277	-		LRK54_RS16315	0.87	-1.7
3,589,277	-		LRK54_RS16315	0.87	+1.0
3,589,277	-		LRK54_RS16315	0.87	-1.1
3,589,277	-		LRK54_RS16315	0.87	+1.1
3,589,305	+		LRK54_RS16315	0.90	+0.5
3,589,330	+				-1.6
3,589,331	-				-0.5
3,589,331	-				-0.2
3,589,479	+				-0.8
3,589,479	+				-0.6
3,589,479	+				-0.4
3,589,479	+				+0.7
3,589,479	+				-2.1
3,589,479	+				+0.4
3,589,479	+				+0.2
3,589,479	+				-0.8
3,589,479	+				-0.0
3,589,479	+				-0.3
3,589,479	+				+0.0
3,589,480	-				+1.3
3,589,480	-				-0.3
3,589,480	-				+0.5
3,589,480	-				-0.1
3,589,480	-				+1.4
3,589,480	-				-0.5
3,589,480	-				-0.7
3,589,480	-				-1.3
3,589,480	-				-0.4
3,589,481	+				-0.4
3,589,481	+				+0.1
3,589,481	+				+1.8
3,589,481	+				-0.9
3,589,481	+				+0.7
3,589,481	+				-1.5
3,589,482	-				+1.8
3,589,482	-				+0.1
3,589,482	-				+0.6
3,589,482	-				-1.7
3,589,482	-				-0.3
3,589,498	+				-0.1
3,589,498	+				+1.1
3,589,498	+				+0.1
3,589,499	-				-0.7
3,589,671	+				+0.7
3,589,671	+				+0.3
3,589,671	+				+1.7
3,589,671	+				+0.3
3,589,671	+				+0.3
3,589,672	-				-2.0
3,589,672	-				-0.4
3,589,672	-				-0.3
3,589,672	-				-0.3
3,589,884	-		LRK54_RS16320	0.22	-1.0
3,589,902	+		LRK54_RS16320	0.23	+0.7
3,589,902	+		LRK54_RS16320	0.23	-0.8
3,589,902	+		LRK54_RS16320	0.23	+0.4
3,589,902	+		LRK54_RS16320	0.23	-0.1
3,589,902	+		LRK54_RS16320	0.23	-1.0
3,589,903	-		LRK54_RS16320	0.23	-0.2
3,589,903	-		LRK54_RS16320	0.23	-0.1
3,589,903	-		LRK54_RS16320	0.23	+1.1
3,589,903	-		LRK54_RS16320	0.23	+0.8
3,589,903	-		LRK54_RS16320	0.23	-1.3
3,589,903	-		LRK54_RS16320	0.23	-0.3
3,589,903	-		LRK54_RS16320	0.23	+1.3
3,589,903	-		LRK54_RS16320	0.23	-0.2
3,589,903	-		LRK54_RS16320	0.23	-0.6
3,589,904	-		LRK54_RS16320	0.23	-1.0
3,589,932	+		LRK54_RS16320	0.25	+0.5
3,589,932	+		LRK54_RS16320	0.25	-1.4
3,589,932	+		LRK54_RS16320	0.25	-0.6
3,589,932	+		LRK54_RS16320	0.25	+0.0
3,589,932	+		LRK54_RS16320	0.25	-0.5
3,589,932	+		LRK54_RS16320	0.25	+0.3
3,589,932	+		LRK54_RS16320	0.25	+0.5
3,589,932	+		LRK54_RS16320	0.25	+0.8
3,589,932	+		LRK54_RS16320	0.25	+0.6
3,589,932	+		LRK54_RS16320	0.25	-0.9
3,589,932	+		LRK54_RS16320	0.25	+0.3
3,589,932	+		LRK54_RS16320	0.25	-0.3
3,589,933	-		LRK54_RS16320	0.25	+0.9
3,589,933	-		LRK54_RS16320	0.25	-1.6
3,589,933	-		LRK54_RS16320	0.25	+1.7
3,589,933	-		LRK54_RS16320	0.25	+0.3
3,589,933	-		LRK54_RS16320	0.25	-0.2
3,589,933	-		LRK54_RS16320	0.25	+0.3
3,589,933	-		LRK54_RS16320	0.25	-0.3
3,589,933	-		LRK54_RS16320	0.25	+2.5
3,589,933	-		LRK54_RS16320	0.25	+1.7
3,589,933	-		LRK54_RS16320	0.25	+0.3
3,589,933	-		LRK54_RS16320	0.25	+0.1
3,589,933	-				+0.3
3,589,933	-		LRK54_RS16320	0.25	+0.4
3,589,933	-		LRK54_RS16320	0.25	+0.5
3,589,933	-		LRK54_RS16320	0.25	+0.6
3,589,933	-		LRK54_RS16320	0.25	-0.1
3,589,933	-		LRK54_RS16320	0.25	+1.1
3,589,933	-		LRK54_RS16320	0.25	-0.2
3,589,965	+		LRK54_RS16320	0.27	-1.2
3,589,965	+		LRK54_RS16320	0.27	+1.0
3,589,965	+		LRK54_RS16320	0.27	-0.6
3,589,965	+		LRK54_RS16320	0.27	-0.7
3,589,965	+		LRK54_RS16320	0.27	-0.1
3,589,965	+		LRK54_RS16320	0.27	+0.4
3,589,965	+		LRK54_RS16320	0.27	+0.7
3,589,965	+		LRK54_RS16320	0.27	-0.1
3,589,965	+		LRK54_RS16320	0.27	-0.7
3,589,966	-		LRK54_RS16320	0.27	-0.3
3,589,966	-		LRK54_RS16320	0.27	-0.5
3,589,998	+		LRK54_RS16320	0.29	+1.9
3,589,998	+		LRK54_RS16320	0.29	-0.4
3,589,998	+		LRK54_RS16320	0.29	-0.8
3,589,998	+		LRK54_RS16320	0.29	+0.5
3,589,998	+		LRK54_RS16320	0.29	-1.1
3,589,998	+		LRK54_RS16320	0.29	+0.5
3,589,998	+		LRK54_RS16320	0.29	-0.9
3,589,998	+		LRK54_RS16320	0.29	+0.9
3,589,998	+		LRK54_RS16320	0.29	+1.4
3,589,998	+		LRK54_RS16320	0.29	+0.3
3,589,998	+		LRK54_RS16320	0.29	+0.7
3,589,999	-		LRK54_RS16320	0.29	+0.4
3,589,999	-		LRK54_RS16320	0.29	-0.2
3,590,149	-		LRK54_RS16320	0.38	-0.8
3,590,149	-		LRK54_RS16320	0.38	+0.0
3,590,149	-		LRK54_RS16320	0.38	-0.1
3,590,202	+		LRK54_RS16320	0.41	+0.6
3,590,202	+		LRK54_RS16320	0.41	+0.3
3,590,202	+		LRK54_RS16320	0.41	+0.7
3,590,203	-		LRK54_RS16320	0.41	-0.6
3,590,203	-		LRK54_RS16320	0.41	-1.2
3,590,203	-		LRK54_RS16320	0.41	-0.1
3,590,203	-		LRK54_RS16320	0.41	+0.1
3,590,337	+		LRK54_RS16320	0.49	+0.5
3,590,337	+		LRK54_RS16320	0.49	+1.4
3,590,337	+		LRK54_RS16320	0.49	-0.4
3,590,338	-		LRK54_RS16320	0.49	+0.6
3,590,338	-		LRK54_RS16320	0.49	-0.1