Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16250

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,573,994	-				-2.7
3,574,174	+				-0.2
3,574,174	+				-0.4
3,574,174	+				+0.7
3,574,174	+				-2.0
3,574,174	+				-0.2
3,574,174	+				+1.7
3,574,174	+				+0.2
3,574,174	+				+0.5
3,574,174	+				+1.0
3,574,174	+				+0.5
3,574,174	+				-0.5
3,574,174	+				+0.7
3,574,174	+				+1.5
3,574,174	+				-0.6
3,574,174	+				-0.5
3,574,175	-				+0.8
3,574,175	-				+1.0
3,574,175	-				+0.4
3,574,175	-				+0.3
3,574,175	-				-0.1
3,574,175	-				+1.9
3,574,175	-				+0.4
3,574,175	-				+0.2
3,574,333	+		LRK54_RS16245	0.31	-1.7
3,574,334	-		LRK54_RS16245	0.31	+0.7
3,574,334	-		LRK54_RS16245	0.31	-0.1
3,574,334	-		LRK54_RS16245	0.31	+0.6
3,574,350	+		LRK54_RS16245	0.33	-1.7
3,574,351	-		LRK54_RS16245	0.33	-0.2
3,574,351	-		LRK54_RS16245	0.33	+0.2
3,574,417	+		LRK54_RS16245	0.42	-0.3
3,574,417	+		LRK54_RS16245	0.42	+0.0
3,574,417	+		LRK54_RS16245	0.42	-1.0
3,574,417	+		LRK54_RS16245	0.42	-0.5
3,574,417	+		LRK54_RS16245	0.42	-0.4
3,574,417	+		LRK54_RS16245	0.42	-1.1
3,574,417	+		LRK54_RS16245	0.42	-0.7
3,574,417	+		LRK54_RS16245	0.42	+0.7
3,574,417	+		LRK54_RS16245	0.42	-0.5
3,574,417	+		LRK54_RS16245	0.42	-0.4
3,574,418	-		LRK54_RS16245	0.42	+0.0
3,574,418	-		LRK54_RS16245	0.42	+0.4
3,574,418	-		LRK54_RS16245	0.42	+0.7
3,574,418	-		LRK54_RS16245	0.42	+0.7
3,574,418	-		LRK54_RS16245	0.42	+1.0
3,574,418	-		LRK54_RS16245	0.42	-0.9
3,574,418	-		LRK54_RS16245	0.42	+0.2
3,574,765	+		LRK54_RS16245	0.90	+0.1
3,574,765	+		LRK54_RS16245	0.90	+0.0
3,574,765	+		LRK54_RS16245	0.90	-0.0
3,574,765	+		LRK54_RS16245	0.90	+1.3
3,574,765	+		LRK54_RS16245	0.90	+0.9
3,574,765	+		LRK54_RS16245	0.90	+1.0
3,574,765	+		LRK54_RS16245	0.90	+1.0
3,574,765	+		LRK54_RS16245	0.90	+1.1
3,574,765	+		LRK54_RS16245	0.90	+0.0
3,574,766	-				-0.9
3,574,766	-				+0.4
3,574,766	-				-0.6
3,574,766	-				-0.6
3,574,766	-				+0.1
3,574,766	-				+0.1
3,574,766	-				+0.1
3,574,766	-				+0.3
3,574,953	+				-1.3
3,574,953	+				-0.1
3,574,953	+				+0.5
3,574,953	+				+1.3
3,574,954	-				-0.5
3,574,954	-				-0.3
3,574,954	-				+0.6
3,574,954	-				+0.1
3,574,954	-				-0.4
3,574,954	-				+0.3
3,574,954	-				-0.9
3,574,954	-				-0.2
3,574,954	-				-0.7
3,574,954	-				+0.2
3,574,987	-				+0.7
3,575,364	+		LRK54_RS16250	0.22	+1.4
3,575,364	+		LRK54_RS16250	0.22	+0.3
3,575,364	+		LRK54_RS16250	0.22	+0.2
3,575,364	+		LRK54_RS16250	0.22	-0.6
3,575,364	+		LRK54_RS16250	0.22	+1.3
3,575,364	+		LRK54_RS16250	0.22	+1.5
3,575,364	+		LRK54_RS16250	0.22	-0.1
3,575,364	+		LRK54_RS16250	0.22	+0.3
3,575,364	+		LRK54_RS16250	0.22	-0.0
3,575,364	+		LRK54_RS16250	0.22	+3.9
3,575,364	+		LRK54_RS16250	0.22	-0.0
3,575,364	+		LRK54_RS16250	0.22	+0.7
3,575,364	+		LRK54_RS16250	0.22	-0.9
3,575,364	+		LRK54_RS16250	0.22	-0.5
3,575,364	+		LRK54_RS16250	0.22	+0.4
3,575,365	-		LRK54_RS16250	0.22	+0.2
3,575,365	-		LRK54_RS16250	0.22	-1.1
3,575,365	-		LRK54_RS16250	0.22	+0.3
3,575,365	-		LRK54_RS16250	0.22	-0.0
3,575,365	-		LRK54_RS16250	0.22	-0.5
3,575,365	-		LRK54_RS16250	0.22	+0.5
3,575,365	-		LRK54_RS16250	0.22	-0.6
3,575,365	-		LRK54_RS16250	0.22	-0.6
3,575,365	-		LRK54_RS16250	0.22	-2.0
3,575,365	-		LRK54_RS16250	0.22	+0.9
3,575,365	-		LRK54_RS16250	0.22	-0.4
3,575,365	-		LRK54_RS16250	0.22	+0.4
3,575,370	+		LRK54_RS16250	0.23	+0.4
3,575,370	+		LRK54_RS16250	0.23	+0.2
3,575,370	+		LRK54_RS16250	0.23	-0.3
3,575,370	+		LRK54_RS16250	0.23	-0.9
3,575,370	+		LRK54_RS16250	0.23	+0.1
3,575,370	+		LRK54_RS16250	0.23	+1.5
3,575,370	+		LRK54_RS16250	0.23	-1.1
3,575,370	+		LRK54_RS16250	0.23	+0.6
3,575,370	+		LRK54_RS16250	0.23	+0.2
3,575,370	+		LRK54_RS16250	0.23	+1.3
3,575,371	-		LRK54_RS16250	0.23	-0.3
3,575,371	-		LRK54_RS16250	0.23	-0.6
3,575,371	-		LRK54_RS16250	0.23	-0.3
3,575,371	-		LRK54_RS16250	0.23	-1.4
3,575,371	-		LRK54_RS16250	0.23	-1.1
3,575,371	-		LRK54_RS16250	0.23	+0.2
3,575,371	-		LRK54_RS16250	0.23	+0.0
3,575,412	+		LRK54_RS16250	0.24	+1.3
3,575,412	+		LRK54_RS16250	0.24	+1.4
3,575,412	+		LRK54_RS16250	0.24	+0.5
3,575,412	+		LRK54_RS16250	0.24	+1.0
3,575,412	+		LRK54_RS16250	0.24	-0.3
3,575,412	+		LRK54_RS16250	0.24	+0.5
3,575,412	+		LRK54_RS16250	0.24	-1.3
3,575,412	+		LRK54_RS16250	0.24	+0.1
3,575,412	+		LRK54_RS16250	0.24	-0.2
3,575,413	-		LRK54_RS16250	0.24	-1.7
3,575,413	-		LRK54_RS16250	0.24	-1.4
3,575,413	-		LRK54_RS16250	0.24	-0.7
3,575,413	-		LRK54_RS16250	0.24	-0.4
3,575,413	-		LRK54_RS16250	0.24	+0.5
3,575,413	-		LRK54_RS16250	0.24	-0.1
3,575,413	-		LRK54_RS16250	0.24	+0.9
3,575,571	+		LRK54_RS16250	0.31	+0.7
3,575,601	+		LRK54_RS16250	0.32	-0.4
3,575,601	+		LRK54_RS16250	0.32	-0.7
3,575,778	+		LRK54_RS16250	0.40	+0.9
3,575,778	+		LRK54_RS16250	0.40	+0.3
3,575,778	+		LRK54_RS16250	0.40	+1.1
3,575,778	+		LRK54_RS16250	0.40	+0.5
3,575,778	+		LRK54_RS16250	0.40	-1.4
3,575,778	+		LRK54_RS16250	0.40	-0.4
3,575,778	+		LRK54_RS16250	0.40	+0.3
3,575,778	+		LRK54_RS16250	0.40	+0.4
3,575,778	+		LRK54_RS16250	0.40	-0.0
3,575,778	+		LRK54_RS16250	0.40	+1.6
3,575,778	+		LRK54_RS16250	0.40	-0.6
3,575,778	+		LRK54_RS16250	0.40	-0.5
3,575,778	+		LRK54_RS16250	0.40	+0.7
3,575,778	+		LRK54_RS16250	0.40	+0.0
3,575,779	-		LRK54_RS16250	0.40	-1.2
3,575,779	-		LRK54_RS16250	0.40	+1.3
3,575,779	-		LRK54_RS16250	0.40	+2.9
3,575,779	-		LRK54_RS16250	0.40	-0.0
3,575,779	-		LRK54_RS16250	0.40	+1.0
3,575,779	-		LRK54_RS16250	0.40	-1.2
3,575,779	-		LRK54_RS16250	0.40	-1.2
3,575,779	-		LRK54_RS16250	0.40	+0.2
3,575,868	+		LRK54_RS16250	0.44	-0.4
3,575,868	+		LRK54_RS16250	0.44	-0.2
3,575,868	+		LRK54_RS16250	0.44	+0.7
3,575,868	+		LRK54_RS16250	0.44	+0.7
3,575,868	+		LRK54_RS16250	0.44	-1.1
3,575,869	-		LRK54_RS16250	0.44	+0.6
3,575,869	-		LRK54_RS16250	0.44	+0.3
3,575,869	-		LRK54_RS16250	0.44	-0.3
3,575,869	-		LRK54_RS16250	0.44	+0.6
3,575,869	-		LRK54_RS16250	0.44	-0.9
3,575,869	-		LRK54_RS16250	0.44	+2.3
3,575,869	-		LRK54_RS16250	0.44	+1.0
3,575,880	+		LRK54_RS16250	0.44	-1.5
3,575,880	+		LRK54_RS16250	0.44	-0.9
3,575,881	-		LRK54_RS16250	0.44	+0.7
3,575,881	-		LRK54_RS16250	0.44	+0.6
3,575,881	-		LRK54_RS16250	0.44	-0.3
3,575,881	-		LRK54_RS16250	0.44	+1.5
3,575,881	-		LRK54_RS16250	0.44	-0.1
3,576,213	+		LRK54_RS16250	0.58	-1.3
3,576,213	+		LRK54_RS16250	0.58	-0.9
3,576,213	+		LRK54_RS16250	0.58	-0.5
3,576,214	-		LRK54_RS16250	0.58	+0.1
3,576,214	-		LRK54_RS16250	0.58	+0.2
3,576,214	-		LRK54_RS16250	0.58	-1.4
3,576,214	-		LRK54_RS16250	0.58	+0.7
3,576,214	-		LRK54_RS16250	0.58	+0.5
3,576,214	-		LRK54_RS16250	0.58	+1.7
3,576,214	-		LRK54_RS16250	0.58	-0.6
3,576,214	-		LRK54_RS16250	0.58	-0.1
3,576,214	-		LRK54_RS16250	0.58	+0.3
3,576,214	-		LRK54_RS16250	0.58	-0.6
3,576,214	-		LRK54_RS16250	0.58	-0.4
3,576,381	+		LRK54_RS16250	0.65	+1.0
3,576,381	+		LRK54_RS16250	0.65	-0.1
3,576,382	-		LRK54_RS16250	0.65	-0.2
3,576,382	-		LRK54_RS16250	0.65	-0.1
3,576,489	+		LRK54_RS16250	0.70	+1.6
3,576,489	+		LRK54_RS16250	0.70	+0.3
3,576,489	+		LRK54_RS16250	0.70	-1.3
3,576,489	+		LRK54_RS16250	0.70	-0.9
3,576,489	+		LRK54_RS16250	0.70	+1.3
3,576,489	+		LRK54_RS16250	0.70	-0.7
3,576,490	-		LRK54_RS16250	0.70	-0.4
3,576,490	-		LRK54_RS16250	0.70	+0.1
3,576,490	-		LRK54_RS16250	0.70	-0.6
3,576,490	-		LRK54_RS16250	0.70	-1.1
3,576,490	-		LRK54_RS16250	0.70	-0.5
3,576,615	+		LRK54_RS16250	0.75	-0.8
3,576,615	+		LRK54_RS16250	0.75	+0.4
3,576,615	+		LRK54_RS16250	0.75	+0.3
3,576,615	+		LRK54_RS16250	0.75	-0.6
3,576,615	+		LRK54_RS16250	0.75	+1.5
3,576,615	+		LRK54_RS16250	0.75	-1.1
3,576,615	+				+1.3
3,576,615	+		LRK54_RS16250	0.75	+0.2
3,576,615	+		LRK54_RS16250	0.75	+1.0
3,576,615	+		LRK54_RS16250	0.75	-0.4
3,576,615	+		LRK54_RS16250	0.75	+0.8
3,576,615	+		LRK54_RS16250	0.75	+0.8
3,576,615	+		LRK54_RS16250	0.75	-0.4
3,576,615	+		LRK54_RS16250	0.75	+0.8
3,576,615	+		LRK54_RS16250	0.75	-0.1
3,576,615	+		LRK54_RS16250	0.75	+0.5
3,576,615	+		LRK54_RS16250	0.75	+0.9
3,576,615	+		LRK54_RS16250	0.75	+0.9
3,576,616	-		LRK54_RS16250	0.75	+0.3
3,576,616	-		LRK54_RS16250	0.75	-0.1
3,576,616	-		LRK54_RS16250	0.75	+0.2
3,576,616	-		LRK54_RS16250	0.75	-0.7
3,576,616	-		LRK54_RS16250	0.75	-0.3
3,576,616	-		LRK54_RS16250	0.75	+1.0
3,576,616	-		LRK54_RS16250	0.75	+0.5
3,576,616	-		LRK54_RS16250	0.75	+1.0
3,576,616	-		LRK54_RS16250	0.75	+0.1
3,576,616	-		LRK54_RS16250	0.75	-0.2
3,576,616	-		LRK54_RS16250	0.75	-1.0
3,576,616	-		LRK54_RS16250	0.75	-1.4
3,576,616	-		LRK54_RS16250	0.75	+0.3
3,576,616	-		LRK54_RS16250	0.75	-1.1
3,576,711	+		LRK54_RS16250	0.79	+0.1
3,576,711	+		LRK54_RS16250	0.79	+0.5
3,576,711	+		LRK54_RS16250	0.79	+0.9
3,576,711	+		LRK54_RS16250	0.79	+0.4
3,576,711	+		LRK54_RS16250	0.79	+1.0
3,576,711	+		LRK54_RS16250	0.79	-1.1
3,576,712	-		LRK54_RS16250	0.79	+1.4
3,576,712	-		LRK54_RS16250	0.79	+1.0
3,576,712	-		LRK54_RS16250	0.79	-0.3
3,576,712	-		LRK54_RS16250	0.79	-0.1
3,576,712	-		LRK54_RS16250	0.79	-0.2
3,576,712	-		LRK54_RS16250	0.79	+0.2
3,576,780	+		LRK54_RS16250	0.82	+3.3
3,576,780	+		LRK54_RS16250	0.82	+0.1
3,576,780	+		LRK54_RS16250	0.82	+1.3
3,576,780	+		LRK54_RS16250	0.82	+1.1
3,576,780	+		LRK54_RS16250	0.82	-0.3
3,576,780	+		LRK54_RS16250	0.82	+0.4
3,576,780	+		LRK54_RS16250	0.82	+0.7
3,576,781	-		LRK54_RS16250	0.82	+0.4
3,576,781	-		LRK54_RS16250	0.82	+1.0
3,576,781	-		LRK54_RS16250	0.82	-1.1
3,576,781	-		LRK54_RS16250	0.82	-0.7
3,576,781	-		LRK54_RS16250	0.82	-0.6
3,576,781	-		LRK54_RS16250	0.82	-0.2
3,576,781	-		LRK54_RS16250	0.82	-0.2
3,576,781	-		LRK54_RS16250	0.82	-0.0
3,576,781	-		LRK54_RS16250	0.82	+0.9
3,576,781	-		LRK54_RS16250	0.82	-0.1
3,576,781	-		LRK54_RS16250	0.82	+0.7
3,576,781	-		LRK54_RS16250	0.82	+3.0
3,576,781	-		LRK54_RS16250	0.82	-0.1
3,576,781	-		LRK54_RS16250	0.82	+1.3
3,576,861	+		LRK54_RS16250	0.86	-0.1
3,576,861	+		LRK54_RS16250	0.86	+0.3
3,576,861	+		LRK54_RS16250	0.86	+0.1
3,576,861	+		LRK54_RS16250	0.86	+1.0
3,576,862	-		LRK54_RS16250	0.86	-0.5
3,576,862	-		LRK54_RS16250	0.86	-2.3
3,576,862	-		LRK54_RS16250	0.86	+1.2
3,576,862	-		LRK54_RS16250	0.86	-1.2
3,576,862	-		LRK54_RS16250	0.86	+2.0
3,576,862	-		LRK54_RS16250	0.86	+0.2
3,576,862	-		LRK54_RS16250	0.86	+0.7
3,576,862	-		LRK54_RS16250	0.86	+0.1
3,577,092	+				+0.1
3,577,092	+				-0.9
3,577,092	+				+0.6
3,577,092	+				-0.5
3,577,092	+				+0.3
3,577,092	+				-0.9
3,577,092	+				+0.7
3,577,092	+				+1.3
3,577,092	+				-1.6
3,577,092	+				+0.2
3,577,092	+				-0.6
3,577,092	+				+0.1
3,577,093	-				+0.1
3,577,093	-				-0.3
3,577,093	-				-0.2
3,577,093	-				+0.1
3,577,093	-				-0.3
3,577,093	-				+2.3
3,577,093	-				+0.9
3,577,093	-				+2.3
3,577,093	-				-0.7
3,577,183	+				-0.1
3,577,184	-				+0.7
3,577,184	-				+0.8
3,577,184	-				-1.5