Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16230

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,569,488	+				-0.3
3,569,488	+				+0.3
3,569,488	+				-0.7
3,569,488	+				+0.2
3,569,488	+				+0.3
3,569,488	+				+1.0
3,569,488	+				-0.3
3,569,488	+				+0.1
3,569,489	-				+1.6
3,569,489	-				-0.1
3,569,489	-				-0.5
3,569,489	-				+0.1
3,569,489	-				-0.2
3,569,489	-				+0.2
3,569,489	-				-0.5
3,569,489	-				+0.1
3,569,489	-				-0.1
3,569,489	-				-0.7
3,569,489	-				+0.5
3,569,489	-				-0.5
3,569,489	-				-0.3
3,569,521	+				+0.3
3,569,521	+				+0.4
3,569,521	+				+0.5
3,569,521	+				+0.5
3,569,521	+				+0.9
3,569,522	-				+0.7
3,569,522	-				-1.1
3,569,522	-				+0.5
3,569,522	-				-0.2
3,569,522	-				+0.9
3,569,522	-				-0.8
3,569,522	-				-0.1
3,569,806	+		LRK54_RS16230	0.30	+0.5
3,569,806	+		LRK54_RS16230	0.30	-0.7
3,569,806	+		LRK54_RS16230	0.30	-0.8
3,569,806	+		LRK54_RS16230	0.30	+0.9
3,569,806	+		LRK54_RS16230	0.30	+0.1
3,569,806	+		LRK54_RS16230	0.30	-0.5
3,569,806	+		LRK54_RS16230	0.30	-1.1
3,569,807	-		LRK54_RS16230	0.30	-0.2
3,569,807	-		LRK54_RS16230	0.30	-0.9
3,569,807	-		LRK54_RS16230	0.30	+1.1
3,569,807	-		LRK54_RS16230	0.30	+1.1
3,569,807	-		LRK54_RS16230	0.30	+0.3
3,569,807	-		LRK54_RS16230	0.30	+0.7
3,569,807	-		LRK54_RS16230	0.30	-0.9
3,569,807	-		LRK54_RS16230	0.30	+1.7
3,569,807	-		LRK54_RS16230	0.30	+0.0
3,569,908	+		LRK54_RS16230	0.38	+1.0
3,569,908	+		LRK54_RS16230	0.38	+1.6
3,569,908	+		LRK54_RS16230	0.38	+2.3
3,569,909	-		LRK54_RS16230	0.38	-0.6
3,569,909	-		LRK54_RS16230	0.38	-0.7
3,569,909	-		LRK54_RS16230	0.38	+0.2
3,570,112	+		LRK54_RS16230	0.54	-0.6
3,570,112	+		LRK54_RS16230	0.54	+0.4
3,570,112	+		LRK54_RS16230	0.54	+1.3
3,570,112	+		LRK54_RS16230	0.54	+0.3
3,570,112	+		LRK54_RS16230	0.54	+0.7
3,570,112	+		LRK54_RS16230	0.54	+0.3
3,570,112	+		LRK54_RS16230	0.54	+1.2
3,570,112	+		LRK54_RS16230	0.54	+0.3
3,570,113	-		LRK54_RS16230	0.54	+0.1
3,570,113	-		LRK54_RS16230	0.54	-1.1
3,570,113	-		LRK54_RS16230	0.54	+0.4
3,570,113	-		LRK54_RS16230	0.54	-0.8
3,570,113	-		LRK54_RS16230	0.54	+0.7
3,570,113	-		LRK54_RS16230	0.54	+0.7
3,570,113	-		LRK54_RS16230	0.54	-0.1
3,570,113	-		LRK54_RS16230	0.54	+0.9
3,570,113	-		LRK54_RS16230	0.54	-0.2
3,570,113	-		LRK54_RS16230	0.54	+0.6
3,570,113	-		LRK54_RS16230	0.54	+0.7
3,570,115	-		LRK54_RS16230	0.54	+0.5
3,570,133	+		LRK54_RS16230	0.56	-0.3
3,570,133	+		LRK54_RS16230	0.56	-1.1
3,570,134	-		LRK54_RS16230	0.56	+1.9
3,570,134	-		LRK54_RS16230	0.56	-0.5
3,570,134	-		LRK54_RS16230	0.56	+1.0
3,570,134	-		LRK54_RS16230	0.56	-0.1
3,570,134	-		LRK54_RS16230	0.56	-0.3
3,570,134	-		LRK54_RS16230	0.56	+0.4
3,570,134	-		LRK54_RS16230	0.56	+0.8
3,570,400	+		LRK54_RS16230	0.77	+2.7
3,570,400	+		LRK54_RS16230	0.77	+0.1
3,570,400	+		LRK54_RS16230	0.77	+0.3
3,570,400	+		LRK54_RS16230	0.77	-0.7
3,570,400	+		LRK54_RS16230	0.77	+0.5
3,570,400	+		LRK54_RS16230	0.77	-0.3
3,570,401	-		LRK54_RS16230	0.77	+3.0
3,570,401	-		LRK54_RS16230	0.77	+2.3
3,570,401	-		LRK54_RS16230	0.77	+0.6
3,570,401	-		LRK54_RS16230	0.77	+0.5
3,570,401	-		LRK54_RS16230	0.77	-0.1
3,570,401	-		LRK54_RS16230	0.77	+0.1
3,570,765	+				-0.5
3,570,775	+				+1.1
3,570,775	+				-0.1
3,570,775	+				-1.1
3,570,775	+				-0.0
3,570,775	+				-0.8
3,570,776	-				-1.2
3,570,776	-				+1.3
3,570,776	-				-0.8
3,570,860	+				+0.7
3,570,911	+				+0.5
3,570,911	+				-0.2
3,570,911	+				-0.3
3,570,911	+				-0.9
3,570,911	+				+0.7
3,570,912	-				+1.2
3,570,912	-				+0.6
3,570,978	+				+0.5
3,570,978	+				+0.5
3,570,978	+				+0.7
3,570,978	+				+0.9
3,570,978	+				-1.5
3,570,978	+				-1.1
3,570,978	+				+0.3
3,570,978	+				+0.9
3,570,978	+				-2.1
3,570,978	+				+0.2
3,570,978	+				+0.0
3,570,978	+				-0.1
3,570,979	-				-0.2
3,570,979	-				-0.2
3,570,979	-				-0.1
3,570,979	-				-0.3
3,570,979	-				+0.6
3,570,979	-				+1.3
3,570,979	-				-0.3
3,570,979	-				+0.0
3,571,030	+				+1.3
3,571,030	+				+0.1
3,571,030	+				-0.7
3,571,030	+				-0.1
3,571,030	+				-1.0
3,571,030	+				-0.2
3,571,030	+				-0.3
3,571,030	+				+0.2
3,571,030	+				-0.1
3,571,030	+				+0.4
3,571,031	-				-0.1
3,571,031	-				-1.6
3,571,031	-				+0.4
3,571,031	-				+0.2
3,571,031	-				-0.6
3,571,031	-				+0.6
3,571,031	-				-0.5
3,571,031	-				+0.2
3,571,207	+		LRK54_RS16235	0.13	-0.3
3,571,208	-		LRK54_RS16235	0.13	+0.6
3,571,267	+		LRK54_RS16235	0.17	-0.3
3,571,267	+		LRK54_RS16235	0.17	+0.5
3,571,267	+		LRK54_RS16235	0.17	+0.1
3,571,267	+		LRK54_RS16235	0.17	+0.1
3,571,267	+		LRK54_RS16235	0.17	+0.9
3,571,267	+		LRK54_RS16235	0.17	-0.8
3,571,267	+		LRK54_RS16235	0.17	+1.2
3,571,267	+		LRK54_RS16235	0.17	+2.3
3,571,267	+		LRK54_RS16235	0.17	-0.3
3,571,267	+		LRK54_RS16235	0.17	-0.2
3,571,267	+		LRK54_RS16235	0.17	-0.1
3,571,267	+		LRK54_RS16235	0.17	+2.8
3,571,267	+		LRK54_RS16235	0.17	-1.3
3,571,267	+		LRK54_RS16235	0.17	-2.4
3,571,267	+		LRK54_RS16235	0.17	-0.8
3,571,267	+		LRK54_RS16235	0.17	+0.5
3,571,267	+		LRK54_RS16235	0.17	+0.7
3,571,267	+		LRK54_RS16235	0.17	+0.4
3,571,267	+		LRK54_RS16235	0.17	-0.4
3,571,267	+		LRK54_RS16235	0.17	-1.8
3,571,267	+		LRK54_RS16235	0.17	+2.1
3,571,267	+		LRK54_RS16235	0.17	-0.7
3,571,267	+		LRK54_RS16235	0.17	+0.9
3,571,267	+		LRK54_RS16235	0.17	-2.7
3,571,267	+		LRK54_RS16235	0.17	-0.3
3,571,267	+		LRK54_RS16235	0.17	-0.0
3,571,267	+		LRK54_RS16235	0.17	-0.1
3,571,267	+		LRK54_RS16235	0.17	+0.9
3,571,267	+		LRK54_RS16235	0.17	-0.5
3,571,267	+		LRK54_RS16235	0.17	-1.2
3,571,267	+		LRK54_RS16235	0.17	-1.4
3,571,267	+		LRK54_RS16235	0.17	-0.5
3,571,268	-		LRK54_RS16235	0.17	-1.2
3,571,268	-		LRK54_RS16235	0.17	-0.1
3,571,268	-		LRK54_RS16235	0.17	+0.1
3,571,268	-		LRK54_RS16235	0.17	-0.5
3,571,268	-		LRK54_RS16235	0.17	-0.5
3,571,268	-		LRK54_RS16235	0.17	-0.6
3,571,268	-		LRK54_RS16235	0.17	-0.6
3,571,268	-		LRK54_RS16235	0.17	+0.7
3,571,268	-		LRK54_RS16235	0.17	-0.2
3,571,268	-		LRK54_RS16235	0.17	+1.7
3,571,268	-		LRK54_RS16235	0.17	+0.7
3,571,268	-		LRK54_RS16235	0.17	+0.3
3,571,268	-		LRK54_RS16235	0.17	-0.2
3,571,268	-		LRK54_RS16235	0.17	-2.5
3,571,268	-		LRK54_RS16235	0.17	-0.3
3,571,268	-		LRK54_RS16235	0.17	+0.1
3,571,268	-		LRK54_RS16235	0.17	-1.3
3,571,268	-		LRK54_RS16235	0.17	+0.4
3,571,268	-		LRK54_RS16235	0.17	-1.1
3,571,318	+				+1.9
3,571,318	+		LRK54_RS16235	0.20	+0.7
3,571,319	-		LRK54_RS16235	0.20	+0.7
3,571,381	+		LRK54_RS16235	0.24	-0.9
3,571,381	+		LRK54_RS16235	0.24	-1.5
3,571,382	-		LRK54_RS16235	0.24	+0.0
3,571,411	+		LRK54_RS16235	0.26	-1.9
3,571,411	+		LRK54_RS16235	0.26	+0.1
3,571,412	-		LRK54_RS16235	0.26	+0.3
3,571,412	-		LRK54_RS16235	0.26	+0.6
3,571,555	+		LRK54_RS16235	0.35	+0.1
3,571,555	+		LRK54_RS16235	0.35	+2.3
3,571,555	+		LRK54_RS16235	0.35	-0.7
3,571,555	+		LRK54_RS16235	0.35	+0.7
3,571,556	-		LRK54_RS16235	0.35	-0.2
3,571,556	-		LRK54_RS16235	0.35	+0.4
3,571,556	-		LRK54_RS16235	0.35	+0.1
3,571,556	-		LRK54_RS16235	0.35	-0.1
3,571,556	-		LRK54_RS16235	0.35	+0.3
3,571,556	-		LRK54_RS16235	0.35	+1.3
3,571,556	-		LRK54_RS16235	0.35	-0.3
3,571,556	-		LRK54_RS16235	0.35	+0.3
3,571,556	-		LRK54_RS16235	0.35	+0.3
3,571,556	-		LRK54_RS16235	0.35	-1.7
3,571,556	-		LRK54_RS16235	0.35	-0.4
3,571,624	+		LRK54_RS16235	0.40	-1.1
3,571,624	+		LRK54_RS16235	0.40	-0.3
3,571,624	+		LRK54_RS16235	0.40	+0.5
3,571,624	+		LRK54_RS16235	0.40	-0.7
3,571,624	+		LRK54_RS16235	0.40	+0.1
3,571,624	+		LRK54_RS16235	0.40	+0.5
3,571,625	-		LRK54_RS16235	0.40	-0.1
3,571,625	-		LRK54_RS16235	0.40	-0.8
3,571,625	-		LRK54_RS16235	0.40	+0.7
3,571,625	-		LRK54_RS16235	0.40	+1.9
3,571,625	-		LRK54_RS16235	0.40	-0.2
3,571,625	-		LRK54_RS16235	0.40	-0.1
3,571,625	-		LRK54_RS16235	0.40	-0.2
3,571,625	-		LRK54_RS16235	0.40	+0.9
3,571,625	-		LRK54_RS16235	0.40	-0.3
3,571,625	-		LRK54_RS16235	0.40	-0.3
3,571,625	-		LRK54_RS16235	0.40	+0.4
3,571,625	-		LRK54_RS16235	0.40	-0.7
3,571,625	-		LRK54_RS16235	0.40	+1.4
3,571,625	-		LRK54_RS16235	0.40	-0.5
3,571,669	+		LRK54_RS16235	0.43	+0.8
3,571,669	+		LRK54_RS16235	0.43	+0.4
3,571,670	-		LRK54_RS16235	0.43	-0.1
3,571,670	-		LRK54_RS16235	0.43	+2.9
3,571,670	-		LRK54_RS16235	0.43	-1.1