Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16155

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,554,599	+				+1.5
3,554,600	-				-0.5
3,554,600	-				-0.3
3,554,607	+				-0.1
3,554,607	+				-1.5
3,554,607	+				+0.9
3,554,607	+				-0.5
3,554,607	+				-1.6
3,554,607	+				-0.3
3,554,607	+				-0.2
3,554,607	+				-1.0
3,554,607	+				+0.2
3,554,607	+				-0.6
3,554,607	+				-0.8
3,554,607	+				+0.1
3,554,607	+				-1.1
3,554,607	+				+0.3
3,554,607	+				+0.4
3,554,607	+				-1.1
3,554,608	-				+1.1
3,554,608	-				-0.1
3,554,608	-				-0.3
3,554,608	-				-0.4
3,554,608	-				-0.4
3,554,608	-				-0.2
3,554,608	-				+0.3
3,554,608	-				-0.9
3,554,608	-				+1.2
3,554,608	-				-0.5
3,554,608	-				-0.5
3,554,608	-				+0.7
3,554,608	-				+0.3
3,554,694	-				-1.1
3,554,694	-				-0.5
3,555,032	+		LRK54_RS16150	0.81	+1.2
3,555,032	+		LRK54_RS16150	0.81	+0.3
3,555,032	+		LRK54_RS16150	0.81	-1.5
3,555,032	+		LRK54_RS16150	0.81	-1.7
3,555,033	-		LRK54_RS16150	0.81	-0.7
3,555,033	-		LRK54_RS16150	0.81	-1.2
3,555,136	+				+0.0
3,555,136	+				-0.8
3,555,136	+				+0.8
3,555,136	+				-1.8
3,555,137	-				-0.3
3,555,137	-				-2.2
3,555,137	-				-2.0
3,555,137	-				+0.4
3,555,137	-				-0.3
3,555,137	-				+0.9
3,555,137	-				-0.1
3,555,137	-				+2.3
3,555,341	+				-0.3
3,555,341	+				-0.4
3,555,341	+				-0.1
3,555,341	+				+0.5
3,555,341	+				-0.7
3,555,341	+				-0.7
3,555,341	+				-0.1
3,555,341	+				-1.1
3,555,341	+				-0.1
3,555,342	-				-2.0
3,555,342	-				-1.2
3,555,342	-				+0.4
3,555,342	-				-1.8
3,555,344	+				+0.3
3,555,344	+				-0.6
3,555,344	+				-0.3
3,555,344	+				-1.0
3,555,344	+				-2.4
3,555,344	+				-2.2
3,555,344	+				-0.1
3,555,344	+				+0.3
3,555,344	+				-0.9
3,555,344	+				-0.7
3,555,344	+				-1.8
3,555,344	+				-1.4
3,555,344	+				-0.4
3,555,344	+				-1.8
3,555,344	+				+1.0
3,555,344	+				-0.1
3,555,344	+				-1.7
3,555,344	+				-0.2
3,555,344	+				+0.3
3,555,344	+				+1.3
3,555,344	+				+0.3
3,555,344	+				-0.3
3,555,344	+				-1.1
3,555,344	+				+0.4
3,555,345	-				-0.5
3,555,345	-				-0.3
3,555,345	-				-2.9
3,555,345	-				-1.7
3,555,345	-				-0.7
3,555,345	-				-1.1
3,555,345	-				-2.0
3,555,345	-				-2.3
3,555,345	-				-1.4
3,555,345	-				+0.5
3,555,345	-				-0.8
3,555,345	-				-0.7
3,555,345	-				-0.3
3,555,345	-				-0.7
3,555,345	-				-0.2
3,555,345	-				-1.1
3,555,345	-				+0.3
3,555,345	-				-0.1
3,555,345	-				-2.0
3,555,345	-				-2.3
3,555,345	-				+0.3
3,555,432	+				-0.9
3,555,432	+				-0.2
3,555,432	+				-0.3
3,555,432	+				-2.8
3,555,433	-				-0.6
3,555,433	-				-2.7
3,555,463	-				-0.9
3,555,480	+				-0.3
3,555,480	+				+1.5
3,555,480	+				+0.9
3,555,481	-				+0.9
3,555,481	-				+0.9
3,555,481	-				-0.5
3,555,495	+				-2.4
3,555,495	+				-0.2
3,555,495	+				-0.4
3,555,496	-				+1.0
3,555,496	-				+0.7
3,556,206	+		LRK54_RS16155	0.66	+0.9
3,556,207	-		LRK54_RS16155	0.66	-0.4
3,556,207	-		LRK54_RS16155	0.66	-1.4
3,556,356	+		LRK54_RS16155	0.82	-0.8
3,556,453	+				-0.2
3,556,453	+				-0.2
3,556,453	+				-0.4
3,556,453	+				+0.1
3,556,453	+				-0.3
3,556,453	+				-1.1
3,556,453	+				-0.8
3,556,454	-				+0.3
3,556,454	-				-0.9
3,556,454	-				+0.3
3,556,454	-				-0.1
3,556,454	-				+0.3
3,556,454	-				-3.2
3,556,454	-				-0.6
3,556,454	-				-0.1
3,556,478	+				-1.6
3,556,478	+				-0.5
3,556,478	+				-0.7
3,556,478	+				-0.7
3,556,478	+				-1.1
3,556,478	+				-0.4
3,556,495	+				-0.3
3,556,495	+				-0.3
3,556,495	+				-0.1
3,556,495	+				-0.3
3,556,495	+				+0.9
3,556,495	+				-0.9
3,556,495	+				-0.1
3,556,495	+				-0.3
3,556,495	+				-2.5
3,556,495	+				-0.1
3,556,498	+				-0.7
3,556,498	+				-1.4
3,556,498	+				+0.3
3,556,498	+				-0.7
3,556,532	+				+1.7
3,556,532	+				-0.6
3,556,532	+				+0.3
3,556,532	+				-0.7
3,556,532	+				-1.0
3,556,615	+		LRK54_RS16160	0.54	-0.9
3,556,679	+				-1.3