Experiment: R2A with FW104 filtrate 0.5 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS16045 and LRK54_RS16050 are separated by 2 nucleotides LRK54_RS16050 and LRK54_RS16055 overlap by 4 nucleotides LRK54_RS16055 and LRK54_RS16060 are separated by 140 nucleotides
LRK54_RS16045: LRK54_RS16045 - homoserine O-acetyltransferase, at 3,536,073 to 3,537,182
_RS16045
LRK54_RS16050: LRK54_RS16050 - tetratricopeptide repeat protein, at 3,537,185 to 3,538,237
_RS16050
LRK54_RS16055: LRK54_RS16055 - cytochrome c-type biogenesis protein CcmH, at 3,538,234 to 3,538,674
_RS16055
LRK54_RS16060: LRK54_RS16060 - DsbE family thiol:disulfide interchange protein, at 3,538,815 to 3,539,357
_RS16060
Position (kb)
3537
3538
3539 Strain fitness (log2 ratio)
-2
-1
0
1 at 3537.451 kb on - strand, within LRK54_RS16050 at 3538.072 kb on - strand, within LRK54_RS16050 at 3538.285 kb on - strand, within LRK54_RS16055 at 3538.285 kb on - strand, within LRK54_RS16055 at 3538.679 kb on - strand at 3538.679 kb on - strand at 3538.679 kb on - strand at 3538.679 kb on - strand at 3538.741 kb on - strand at 3538.741 kb on - strand at 3538.798 kb on - strand at 3538.798 kb on - strand at 3538.798 kb on - strand at 3538.798 kb on - strand at 3538.798 kb on - strand at 3538.798 kb on - strand at 3538.798 kb on - strand at 3538.798 kb on - strand at 3538.798 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X remove 3,537,451 - LRK54_RS16050 0.25 -2.4 3,538,072 - LRK54_RS16050 0.84 -2.5 3,538,285 - LRK54_RS16055 0.12 -0.9 3,538,285 - LRK54_RS16055 0.12 +0.5 3,538,679 - -0.9 3,538,679 - -1.3 3,538,679 - -0.5 3,538,679 - +0.2 3,538,741 - +1.0 3,538,741 - +0.9 3,538,798 - +0.9 3,538,798 - +0.5 3,538,798 - +0.8 3,538,798 - -0.3 3,538,798 - +1.0 3,538,798 - -0.1 3,538,798 - +0.1 3,538,798 - +0.0 3,538,798 - +0.1
Or see this region's nucleotide sequence