Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15880

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,497,470	-				+0.1
3,497,470	-				+0.8
3,497,518	+				+0.6
3,497,518	+				+0.1
3,497,518	+				-0.3
3,497,518	+				+0.3
3,497,518	+				+0.4
3,497,518	+				+0.3
3,497,518	+				-0.4
3,497,518	+				+0.2
3,497,519	-				+1.1
3,497,519	-				-0.3
3,497,519	-				+0.3
3,497,519	-				-2.7
3,497,519	-				-1.3
3,497,519	-				-0.6
3,497,519	-				-0.1
3,497,519	-				+0.7
3,497,519	-				-0.2
3,497,519	-				-0.2
3,497,519	-				-0.0
3,497,519	-				-0.5
3,497,519	-				+0.5
3,497,548	+				+0.7
3,497,548	+				-0.1
3,497,549	-				+0.9
3,497,549	-				+0.1
3,497,549	-				+0.1
3,497,549	-				-0.1
3,497,549	-				+0.3
3,497,669	+				+0.1
3,497,669	+				+1.7
3,497,669	+				+2.0
3,497,669	+				-1.2
3,497,669	+				-2.1
3,497,669	+				-2.3
3,497,669	+				-0.9
3,497,670	-				+0.7
3,497,670	-				+0.3
3,497,670	-				+0.7
3,497,670	-				-0.7
3,497,670	-				+1.2
3,497,670	-				-0.4
3,497,670	-				+1.3
3,497,670	-				-1.0
3,497,670	-				+0.7
3,497,670	-				+0.0
3,497,670	-				-2.6
3,497,818	+		LRK54_RS15875	0.15	+1.4
3,497,818	+		LRK54_RS15875	0.15	-0.6
3,497,818	+		LRK54_RS15875	0.15	-0.6
3,497,818	+		LRK54_RS15875	0.15	-0.4
3,497,819	-		LRK54_RS15875	0.15	+0.4
3,497,819	-		LRK54_RS15875	0.15	-1.6
3,497,841	+		LRK54_RS15875	0.18	-1.1
3,498,057	+		LRK54_RS15875	0.48	+0.3
3,498,057	+		LRK54_RS15875	0.48	-0.7
3,498,057	+		LRK54_RS15875	0.48	+0.3
3,498,057	+		LRK54_RS15875	0.48	+0.6
3,498,057	+		LRK54_RS15875	0.48	+0.0
3,498,057	+		LRK54_RS15875	0.48	-0.3
3,498,057	+		LRK54_RS15875	0.48	-0.9
3,498,057	+		LRK54_RS15875	0.48	+1.1
3,498,057	+		LRK54_RS15875	0.48	-1.4
3,498,057	+		LRK54_RS15875	0.48	-1.4
3,498,057	+		LRK54_RS15875	0.48	-0.7
3,498,057	+		LRK54_RS15875	0.48	-0.9
3,498,057	+		LRK54_RS15875	0.48	-1.7
3,498,057	+		LRK54_RS15875	0.48	+1.3
3,498,057	+		LRK54_RS15875	0.48	-2.0
3,498,057	+		LRK54_RS15875	0.48	+0.3
3,498,057	+		LRK54_RS15875	0.48	+0.3
3,498,057	+		LRK54_RS15875	0.48	-0.0
3,498,057	+		LRK54_RS15875	0.48	-1.1
3,498,057	+		LRK54_RS15875	0.48	+0.4
3,498,058	-		LRK54_RS15875	0.48	-0.1
3,498,058	-		LRK54_RS15875	0.48	+0.8
3,498,058	-		LRK54_RS15875	0.48	+0.3
3,498,058	-		LRK54_RS15875	0.48	-1.6
3,498,058	-		LRK54_RS15875	0.48	-1.1
3,498,058	-		LRK54_RS15875	0.48	+2.3
3,498,058	-		LRK54_RS15875	0.48	-1.0
3,498,058	-		LRK54_RS15875	0.48	+0.5
3,498,058	-		LRK54_RS15875	0.48	-0.1
3,498,058	-		LRK54_RS15875	0.48	-0.1
3,498,058	-		LRK54_RS15875	0.48	-0.2
3,498,058	-		LRK54_RS15875	0.48	+2.7
3,498,058	-		LRK54_RS15875	0.48	+0.8
3,498,063	+		LRK54_RS15875	0.49	+0.6
3,498,064	-		LRK54_RS15875	0.49	-0.4
3,498,064	-		LRK54_RS15875	0.49	+2.3
3,498,087	+		LRK54_RS15875	0.53	-0.1
3,498,087	+		LRK54_RS15875	0.53	+0.7
3,498,087	+		LRK54_RS15875	0.53	-1.1
3,498,087	+		LRK54_RS15875	0.53	-0.5
3,498,087	+		LRK54_RS15875	0.53	-0.2
3,498,087	+		LRK54_RS15875	0.53	+0.1
3,498,087	+		LRK54_RS15875	0.53	-1.0
3,498,087	+		LRK54_RS15875	0.53	-0.5
3,498,087	+		LRK54_RS15875	0.53	+0.8
3,498,087	+		LRK54_RS15875	0.53	+0.7
3,498,087	+		LRK54_RS15875	0.53	-0.1
3,498,087	+		LRK54_RS15875	0.53	-0.8
3,498,087	+		LRK54_RS15875	0.53	+0.1
3,498,087	+		LRK54_RS15875	0.53	-0.1
3,498,088	-		LRK54_RS15875	0.53	+1.3
3,498,088	-		LRK54_RS15875	0.53	+0.6
3,498,088	-		LRK54_RS15875	0.53	+0.7
3,498,088	-		LRK54_RS15875	0.53	+0.2
3,498,088	-		LRK54_RS15875	0.53	+0.3
3,498,088	-		LRK54_RS15875	0.53	-1.5
3,498,088	-		LRK54_RS15875	0.53	+0.7
3,498,088	-		LRK54_RS15875	0.53	-0.8
3,498,088	-		LRK54_RS15875	0.53	-1.1
3,498,088	-		LRK54_RS15875	0.53	-0.7
3,498,088	-		LRK54_RS15875	0.53	-1.4
3,498,088	-		LRK54_RS15875	0.53	-0.4
3,498,088	-		LRK54_RS15875	0.53	-0.3
3,498,088	-		LRK54_RS15875	0.53	-0.6
3,498,088	-		LRK54_RS15875	0.53	-0.7
3,498,171	+		LRK54_RS15875	0.64	-0.7
3,498,171	+		LRK54_RS15875	0.64	-2.4
3,498,171	+		LRK54_RS15875	0.64	+0.4
3,498,171	+		LRK54_RS15875	0.64	+0.3
3,498,171	+		LRK54_RS15875	0.64	-1.5
3,498,171	+		LRK54_RS15875	0.64	-0.9
3,498,171	+		LRK54_RS15875	0.64	-0.3
3,498,171	+		LRK54_RS15875	0.64	-0.9
3,498,171	+		LRK54_RS15875	0.64	-0.2
3,498,171	+		LRK54_RS15875	0.64	-0.5
3,498,171	+		LRK54_RS15875	0.64	+0.2
3,498,171	+		LRK54_RS15875	0.64	-0.1
3,498,171	+		LRK54_RS15875	0.64	+1.3
3,498,171	+		LRK54_RS15875	0.64	-0.6
3,498,171	+		LRK54_RS15875	0.64	+0.5
3,498,171	+		LRK54_RS15875	0.64	+0.6
3,498,171	+		LRK54_RS15875	0.64	-0.5
3,498,171	+		LRK54_RS15875	0.64	+0.2
3,498,171	+		LRK54_RS15875	0.64	+1.0
3,498,171	+		LRK54_RS15875	0.64	+0.2
3,498,171	+		LRK54_RS15875	0.64	+0.1
3,498,171	+		LRK54_RS15875	0.64	+0.7
3,498,171	+		LRK54_RS15875	0.64	+0.1
3,498,172	-		LRK54_RS15875	0.64	-0.1
3,498,172	-		LRK54_RS15875	0.64	-0.0
3,498,172	-		LRK54_RS15875	0.64	-0.1
3,498,172	-		LRK54_RS15875	0.64	-0.8
3,498,172	-		LRK54_RS15875	0.64	+0.1
3,498,172	-		LRK54_RS15875	0.64	-0.5
3,498,172	-		LRK54_RS15875	0.64	-0.1
3,498,172	-		LRK54_RS15875	0.64	+0.8
3,498,172	-		LRK54_RS15875	0.64	-0.8
3,498,172	-		LRK54_RS15875	0.64	-1.2
3,498,172	-		LRK54_RS15875	0.64	-0.4
3,498,172	-		LRK54_RS15875	0.64	-0.6
3,498,172	-		LRK54_RS15875	0.64	-1.0
3,498,172	-		LRK54_RS15875	0.64	+3.3
3,498,172	-		LRK54_RS15875	0.64	-1.4
3,498,172	-		LRK54_RS15875	0.64	-0.9
3,498,172	-		LRK54_RS15875	0.64	+0.3
3,498,172	-		LRK54_RS15875	0.64	-0.1
3,498,172	-		LRK54_RS15875	0.64	+0.6
3,498,172	-		LRK54_RS15875	0.64	-0.4
3,498,172	-		LRK54_RS15875	0.64	-0.9
3,498,172	-		LRK54_RS15875	0.64	+0.4
3,498,172	-		LRK54_RS15875	0.64	-1.6
3,498,172	-		LRK54_RS15875	0.64	+1.9
3,498,172	-		LRK54_RS15875	0.64	+0.6
3,498,172	-		LRK54_RS15875	0.64	-0.9
3,498,172	-		LRK54_RS15875	0.64	-0.1
3,498,172	-		LRK54_RS15875	0.64	+0.1
3,498,172	-		LRK54_RS15875	0.64	+0.6
3,498,172	-		LRK54_RS15875	0.64	+1.4
3,498,172	-		LRK54_RS15875	0.64	+1.2
3,498,172	-		LRK54_RS15875	0.64	-0.7
3,498,172	-		LRK54_RS15875	0.64	+0.1
3,498,172	-		LRK54_RS15875	0.64	-1.5
3,498,172	-		LRK54_RS15875	0.64	-0.2
3,498,172	-		LRK54_RS15875	0.64	+0.9
3,498,172	-		LRK54_RS15875	0.64	+0.1
3,498,172	-		LRK54_RS15875	0.64	-0.4
3,498,172	-		LRK54_RS15875	0.64	+0.1
3,498,242	+		LRK54_RS15875	0.74	-0.1
3,498,242	+		LRK54_RS15875	0.74	-0.5
3,498,243	-		LRK54_RS15875	0.74	-0.9
3,498,243	-		LRK54_RS15875	0.74	+1.3
3,498,243	-		LRK54_RS15875	0.74	+1.3
3,498,366	+				+0.2
3,498,366	+				-1.5
3,498,366	+				+1.2
3,498,366	+				+0.1
3,498,366	+				-2.1
3,498,366	+				-0.8
3,498,366	+				-0.5
3,498,366	+				+0.5
3,498,366	+				-0.3
3,498,366	+				-0.1
3,498,366	+				+0.2
3,498,366	+				+2.3
3,498,366	+				+1.0
3,498,366	+				+0.0
3,498,366	+				-1.2
3,498,366	+				-0.3
3,498,366	+				+2.3
3,498,366	+				+0.1
3,498,366	+				-1.2
3,498,366	+				+0.9
3,498,366	+				-0.3
3,498,366	+				-0.7
3,498,366	+				-0.5
3,498,366	+				+0.0
3,498,366	+				-1.4
3,498,366	+				-0.7
3,498,366	+				-0.2
3,498,366	+				+0.8
3,498,367	-				+0.5
3,498,367	-				+0.2
3,498,367	-				-0.5
3,498,367	-				-1.3
3,498,367	-				-0.4
3,498,367	-				+0.0
3,498,367	-				+0.3
3,498,367	-				+0.3
3,498,367	-				+0.4
3,498,367	-				+0.1
3,498,367	-				-0.1
3,498,367	-				+0.2
3,498,367	-				-0.1
3,498,367	-				-1.5
3,498,367	-				+0.3
3,498,367	-				+0.8
3,498,367	-				-1.9
3,498,367	-				-0.0
3,498,367	-				+0.6
3,498,367	-				+0.7
3,498,367	-				-0.4
3,498,367	-				-1.6
3,498,367	-				+0.3
3,498,367	-				+0.7
3,498,367	-				-0.4
3,498,367	-				+0.3
3,498,367	-				-0.1
3,498,367	-				-0.6
3,498,367	-				+0.5
3,498,367	-				-1.5
3,498,555	+		LRK54_RS15880	0.10	-1.6
3,498,555	+		LRK54_RS15880	0.10	-1.1
3,498,555	+		LRK54_RS15880	0.10	+0.1
3,498,555	+		LRK54_RS15880	0.10	+0.9
3,498,555	+		LRK54_RS15880	0.10	-1.9
3,498,555	+		LRK54_RS15880	0.10	+1.0
3,498,555	+		LRK54_RS15880	0.10	-3.4
3,498,555	+		LRK54_RS15880	0.10	+1.2
3,498,555	+		LRK54_RS15880	0.10	+1.1
3,498,555	+		LRK54_RS15880	0.10	-0.8
3,498,555	+		LRK54_RS15880	0.10	+0.9
3,498,556	-		LRK54_RS15880	0.10	-0.4
3,498,556	-		LRK54_RS15880	0.10	-0.1
3,498,556	-		LRK54_RS15880	0.10	+0.8
3,498,556	-		LRK54_RS15880	0.10	+0.3
3,498,556	-		LRK54_RS15880	0.10	+1.3
3,498,556	-		LRK54_RS15880	0.10	+1.9
3,498,556	-		LRK54_RS15880	0.10	-0.9
3,498,556	-		LRK54_RS15880	0.10	-1.3
3,498,556	-		LRK54_RS15880	0.10	-0.5
3,498,556	-		LRK54_RS15880	0.10	-1.0
3,498,556	-		LRK54_RS15880	0.10	+0.7
3,498,804	+		LRK54_RS15880	0.35	+0.4
3,498,804	+		LRK54_RS15880	0.35	-0.9
3,498,804	+		LRK54_RS15880	0.35	+1.3
3,498,805	-		LRK54_RS15880	0.35	+0.2
3,498,805	-		LRK54_RS15880	0.35	+1.3
3,498,805	-		LRK54_RS15880	0.35	+0.3
3,498,805	-		LRK54_RS15880	0.35	-0.3
3,498,805	-		LRK54_RS15880	0.35	-0.1
3,498,805	-		LRK54_RS15880	0.35	+0.7
3,498,847	+		LRK54_RS15880	0.39	-0.7
3,498,847	+		LRK54_RS15880	0.39	+0.4
3,498,847	+		LRK54_RS15880	0.39	+0.3
3,498,847	+		LRK54_RS15880	0.39	-0.5
3,498,848	-		LRK54_RS15880	0.39	-1.2
3,498,848	-		LRK54_RS15880	0.39	-0.1
3,498,848	-		LRK54_RS15880	0.39	-0.4
3,498,848	-		LRK54_RS15880	0.39	-0.1
3,499,000	-		LRK54_RS15880	0.54	-0.3
3,499,072	+		LRK54_RS15880	0.61	+1.1
3,499,072	+		LRK54_RS15880	0.61	-1.1
3,499,073	-		LRK54_RS15880	0.61	+1.3
3,499,073	-		LRK54_RS15880	0.61	-1.4
3,499,217	+		LRK54_RS15880	0.75	+1.0
3,499,217	+		LRK54_RS15880	0.75	+0.3
3,499,217	+		LRK54_RS15880	0.75	-0.1
3,499,217	+		LRK54_RS15880	0.75	-0.3
3,499,217	+		LRK54_RS15880	0.75	-0.7
3,499,217	+		LRK54_RS15880	0.75	+0.6
3,499,217	+		LRK54_RS15880	0.75	-0.2
3,499,217	+		LRK54_RS15880	0.75	+0.7
3,499,218	-		LRK54_RS15880	0.75	-1.7
3,499,218	-		LRK54_RS15880	0.75	+1.0
3,499,218	-		LRK54_RS15880	0.75	+0.2
3,499,218	-		LRK54_RS15880	0.75	+0.3
3,499,218	-		LRK54_RS15880	0.75	+0.1
3,499,218	-		LRK54_RS15880	0.75	+0.3
3,499,218	-		LRK54_RS15880	0.75	+1.3
3,499,218	-		LRK54_RS15880	0.75	+0.0
3,499,580	+				-1.4
3,499,580	+				-1.3
3,499,580	+				+0.6
3,499,580	+				-3.1
3,499,580	+				-0.5
3,499,580	+				-0.1
3,499,580	+				-0.2
3,499,580	+				-0.5
3,499,580	+				-1.1
3,499,580	+				+0.9
3,499,580	+				-0.1
3,499,580	+				-0.6
3,499,580	+				-0.5
3,499,581	-				+0.8
3,499,581	-				+0.2
3,499,581	-				-0.6
3,499,581	-				-0.5
3,499,581	-				+0.5
3,499,581	-				+0.7
3,499,581	-				+0.3
3,499,581	-				-0.1
3,499,581	-				-0.9
3,499,581	-				-0.3
3,499,735	+				-0.4
3,499,735	+				-0.2
3,499,735	+				-0.9
3,499,735	+				+0.6
3,499,735	+				-0.7
3,499,736	-				+0.1
3,499,736	-				-2.0
3,499,736	-				-2.1
3,499,736	-				-0.5
3,499,804	+				-0.6
3,499,804	+				-0.9
3,499,804	+				+0.6
3,499,804	+				+1.8
3,499,805	-				+0.7
3,499,805	-				+1.4
3,499,805	-				-1.3
3,499,805	-				-0.3
3,499,805	-				-0.9
3,499,805	-				+0.4
3,499,987	+		LRK54_RS15885	0.29	-0.2
3,499,987	+		LRK54_RS15885	0.29	-1.6
3,499,987	+		LRK54_RS15885	0.29	+1.3
3,499,987	+		LRK54_RS15885	0.29	+0.0
3,499,987	+		LRK54_RS15885	0.29	+1.7
3,499,987	+		LRK54_RS15885	0.29	-0.8
3,499,987	+		LRK54_RS15885	0.29	+0.6
3,499,987	+		LRK54_RS15885	0.29	+1.4
3,499,987	+		LRK54_RS15885	0.29	+0.3
3,499,987	+		LRK54_RS15885	0.29	-0.2
3,499,987	+		LRK54_RS15885	0.29	+0.3
3,499,988	-		LRK54_RS15885	0.29	-0.9
3,499,988	-		LRK54_RS15885	0.29	-0.7
3,499,988	-		LRK54_RS15885	0.29	+3.0
3,499,988	-		LRK54_RS15885	0.29	-0.9
3,499,988	-		LRK54_RS15885	0.29	-0.7
3,499,988	-		LRK54_RS15885	0.29	-1.4
3,499,988	-		LRK54_RS15885	0.29	-0.5
3,499,988	-		LRK54_RS15885	0.29	-0.3
3,499,988	-		LRK54_RS15885	0.29	+0.2
3,499,988	-		LRK54_RS15885	0.29	+0.9
3,499,988	-		LRK54_RS15885	0.29	-1.1
3,500,281	+		LRK54_RS15885	0.69	+0.5
3,500,428	+		LRK54_RS15885	0.90	-1.3
3,500,428	+		LRK54_RS15885	0.90	-0.3
3,500,428	+		LRK54_RS15885	0.90	-0.3
3,500,428	+		LRK54_RS15885	0.90	+1.3
3,500,428	+		LRK54_RS15885	0.90	+0.3
3,500,428	+		LRK54_RS15885	0.90	-1.9
3,500,428	+		LRK54_RS15885	0.90	-0.6
3,500,428	+		LRK54_RS15885	0.90	+1.3
3,500,428	+		LRK54_RS15885	0.90	+0.1
3,500,428	+		LRK54_RS15885	0.90	-1.2
3,500,428	+		LRK54_RS15885	0.90	-1.1
3,500,428	+		LRK54_RS15885	0.90	+0.3
3,500,428	+		LRK54_RS15885	0.90	-2.6
3,500,428	+		LRK54_RS15885	0.90	+0.7
3,500,428	+		LRK54_RS15885	0.90	+1.0
3,500,428	+		LRK54_RS15885	0.90	-0.2
3,500,428	+		LRK54_RS15885	0.90	+0.2
3,500,428	+		LRK54_RS15885	0.90	+1.2
3,500,428	+		LRK54_RS15885	0.90	+0.5
3,500,428	+		LRK54_RS15885	0.90	+0.5
3,500,428	+		LRK54_RS15885	0.90	-0.7
3,500,428	+		LRK54_RS15885	0.90	+1.6
3,500,428	+		LRK54_RS15885	0.90	-0.1
3,500,428	+		LRK54_RS15885	0.90	+0.3
3,500,429	-				-0.3
3,500,429	-				+0.9
3,500,429	-				+0.1
3,500,429	-				+0.0
3,500,429	-				-1.5
3,500,429	-				-0.8
3,500,429	-				-0.4
3,500,429	-				+0.5
3,500,429	-				+1.9
3,500,429	-				+0.7
3,500,429	-				-0.2
3,500,429	-				-0.2
3,500,429	-				-1.0
3,500,429	-				-0.5
3,500,429	-				-0.1
3,500,429	-				+1.3
3,500,429	-				-0.8
3,500,429	-				+0.0
3,500,429	-				-0.8
3,500,429	-				+0.3
3,500,429	-				+0.4