Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15565

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,433,122	+				+0.7
3,433,122	+				-0.1
3,433,122	+				-1.3
3,433,122	+				+1.5
3,433,122	+				-0.0
3,433,122	+				-0.7
3,433,122	+				-0.9
3,433,122	+				-0.5
3,433,122	+				+0.3
3,433,122	+				-1.2
3,433,122	+				-0.2
3,433,123	-				-1.3
3,433,123	-				+2.6
3,433,123	-				-0.3
3,433,123	-				+1.1
3,433,123	-				-1.2
3,433,123	-				+0.3
3,433,123	-				+0.6
3,433,123	-				-2.3
3,433,124	-				-0.0
3,433,251	+				+0.5
3,433,473	+		LRK54_RS15560	0.32	+0.2
3,433,473	+		LRK54_RS15560	0.32	-0.2
3,433,473	+		LRK54_RS15560	0.32	+1.1
3,433,473	+		LRK54_RS15560	0.32	-0.0
3,433,474	-		LRK54_RS15560	0.32	-0.3
3,433,474	-		LRK54_RS15560	0.32	-0.1
3,433,485	+		LRK54_RS15560	0.34	-0.1
3,433,485	+		LRK54_RS15560	0.34	-0.8
3,433,486	-		LRK54_RS15560	0.34	-1.2
3,433,506	+		LRK54_RS15560	0.37	-0.6
3,433,506	+		LRK54_RS15560	0.37	-0.7
3,433,507	-		LRK54_RS15560	0.37	-0.3
3,433,507	-		LRK54_RS15560	0.37	-1.2
3,433,507	-		LRK54_RS15560	0.37	+0.5
3,433,683	+		LRK54_RS15560	0.62	+0.7
3,433,683	+		LRK54_RS15560	0.62	-0.6
3,433,683	+		LRK54_RS15560	0.62	-1.0
3,433,683	+		LRK54_RS15560	0.62	-0.2
3,433,683	+		LRK54_RS15560	0.62	+1.3
3,433,683	+		LRK54_RS15560	0.62	-1.8
3,433,683	+		LRK54_RS15560	0.62	-0.4
3,433,683	+		LRK54_RS15560	0.62	+0.4
3,433,683	+		LRK54_RS15560	0.62	+0.3
3,433,683	+		LRK54_RS15560	0.62	-0.4
3,433,683	+		LRK54_RS15560	0.62	-1.3
3,433,683	+		LRK54_RS15560	0.62	+0.6
3,433,683	+		LRK54_RS15560	0.62	-0.0
3,433,683	+		LRK54_RS15560	0.62	+0.3
3,433,683	+		LRK54_RS15560	0.62	+0.6
3,433,683	+		LRK54_RS15560	0.62	+0.3
3,433,683	+		LRK54_RS15560	0.62	-0.6
3,433,683	+		LRK54_RS15560	0.62	+0.1
3,433,683	+		LRK54_RS15560	0.62	-0.3
3,433,683	+		LRK54_RS15560	0.62	+1.4
3,433,683	+		LRK54_RS15560	0.62	-0.7
3,433,683	+		LRK54_RS15560	0.62	+0.1
3,433,683	+		LRK54_RS15560	0.62	-1.2
3,433,683	+		LRK54_RS15560	0.62	+0.1
3,433,683	+		LRK54_RS15560	0.62	-0.1
3,433,683	+		LRK54_RS15560	0.62	+0.3
3,433,683	+		LRK54_RS15560	0.62	-2.6
3,433,683	+		LRK54_RS15560	0.62	-0.0
3,433,683	+		LRK54_RS15560	0.62	-1.0
3,433,683	+		LRK54_RS15560	0.62	-0.0
3,433,683	+		LRK54_RS15560	0.62	+0.3
3,433,683	+		LRK54_RS15560	0.62	+0.1
3,433,683	+		LRK54_RS15560	0.62	+0.9
3,433,684	-		LRK54_RS15560	0.62	-0.1
3,433,684	-		LRK54_RS15560	0.62	-1.2
3,433,684	-		LRK54_RS15560	0.62	-0.3
3,433,684	-		LRK54_RS15560	0.62	+0.3
3,433,684	-		LRK54_RS15560	0.62	-0.8
3,433,684	-		LRK54_RS15560	0.62	-0.5
3,433,684	-		LRK54_RS15560	0.62	-1.4
3,433,684	-		LRK54_RS15560	0.62	-0.4
3,433,684	-		LRK54_RS15560	0.62	+1.7
3,433,684	-		LRK54_RS15560	0.62	-1.5
3,433,684	-		LRK54_RS15560	0.62	+0.1
3,433,684	-		LRK54_RS15560	0.62	+0.3
3,433,684	-		LRK54_RS15560	0.62	+0.6
3,433,684	-		LRK54_RS15560	0.62	-0.3
3,433,684	-		LRK54_RS15560	0.62	-1.4
3,433,684	-		LRK54_RS15560	0.62	-0.3
3,433,684	-		LRK54_RS15560	0.62	+0.0
3,433,684	-		LRK54_RS15560	0.62	+2.3
3,433,684	-		LRK54_RS15560	0.62	+2.7
3,433,684	-		LRK54_RS15560	0.62	-1.0
3,433,684	-		LRK54_RS15560	0.62	-1.0
3,433,684	-		LRK54_RS15560	0.62	+2.1
3,433,684	-		LRK54_RS15560	0.62	+0.3
3,433,689	+		LRK54_RS15560	0.62	-0.6
3,433,689	+		LRK54_RS15560	0.62	-0.0
3,433,690	-		LRK54_RS15560	0.63	+1.3
3,433,690	-		LRK54_RS15560	0.63	+0.0
3,433,690	-		LRK54_RS15560	0.63	-0.2
3,433,690	-		LRK54_RS15560	0.63	-0.2
3,433,690	-		LRK54_RS15560	0.63	+0.7
3,433,690	-		LRK54_RS15560	0.63	+0.5
3,433,690	-		LRK54_RS15560	0.63	-0.6
3,433,690	-		LRK54_RS15560	0.63	-0.7
3,433,761	+		LRK54_RS15560	0.73	-0.4
3,433,981	+				+1.0
3,433,981	+				-0.6
3,433,982	-				-0.9
3,434,120	+				-0.6
3,434,120	+				+0.7
3,434,120	+				-0.5
3,434,120	+				+0.3
3,434,120	+				-1.1
3,434,121	-				+0.9
3,434,121	-				+1.8
3,434,121	-				+0.4
3,434,121	-				+0.2
3,434,324	+		LRK54_RS15565	0.32	+2.9
3,434,408	+		LRK54_RS15565	0.43	+1.2
3,434,408	+		LRK54_RS15565	0.43	+1.0
3,434,408	+		LRK54_RS15565	0.43	+0.2
3,434,408	+		LRK54_RS15565	0.43	+0.7
3,434,408	+		LRK54_RS15565	0.43	-0.6
3,434,408	+		LRK54_RS15565	0.43	-1.3
3,434,408	+		LRK54_RS15565	0.43	-1.2
3,434,408	+		LRK54_RS15565	0.43	-0.5
3,434,408	+		LRK54_RS15565	0.43	-0.5
3,434,409	-		LRK54_RS15565	0.43	+0.4
3,434,409	-		LRK54_RS15565	0.43	-0.1
3,434,409	-		LRK54_RS15565	0.43	-1.3
3,434,409	-		LRK54_RS15565	0.43	+1.0
3,434,409	-		LRK54_RS15565	0.43	+0.5
3,434,409	-		LRK54_RS15565	0.43	+0.2
3,434,409	-		LRK54_RS15565	0.43	-0.6
3,434,642	+		LRK54_RS15565	0.76	+1.3
3,434,642	+		LRK54_RS15565	0.76	-1.5
3,434,643	-		LRK54_RS15565	0.76	-1.4
3,434,643	-		LRK54_RS15565	0.76	+0.9
3,434,643	-		LRK54_RS15565	0.76	+0.7
3,434,643	-		LRK54_RS15565	0.76	+0.4
3,434,643	-		LRK54_RS15565	0.76	+2.0
3,434,768	+				-1.6
3,434,768	+				+0.4
3,434,768	+				+0.1
3,434,768	+				+0.4
3,434,768	+				-0.0
3,434,768	+				-0.2
3,434,768	+				-0.4
3,434,768	+				-0.2
3,434,768	+				-0.0
3,434,768	+				+0.6
3,434,768	+				+0.8
3,434,768	+				-1.4
3,434,768	+				+1.5
3,434,769	-				+0.7
3,434,769	-				-0.1
3,434,769	-				+0.7
3,434,769	-				-1.4
3,434,769	-				-0.5
3,434,769	-				+0.6
3,434,769	-				+0.7
3,434,795	+				-0.4
3,434,795	+				+0.7
3,434,795	+				+1.5
3,434,796	-				+0.5
3,434,796	-				+0.7
3,434,796	-				-1.6
3,435,024	+		LRK54_RS15570	0.15	-0.8
3,435,025	-		LRK54_RS15570	0.15	-0.7
3,435,025	-		LRK54_RS15570	0.15	-0.5
3,435,179	+		LRK54_RS15570	0.27	+1.1
3,435,180	-		LRK54_RS15570	0.27	+0.1
3,435,180	-		LRK54_RS15570	0.27	-1.7
3,435,244	-		LRK54_RS15570	0.32	+1.0
3,435,258	+		LRK54_RS15570	0.34	-0.0
3,435,258	+		LRK54_RS15570	0.34	-1.0
3,435,258	+		LRK54_RS15570	0.34	-0.0
3,435,258	+		LRK54_RS15570	0.34	-1.7
3,435,258	+		LRK54_RS15570	0.34	-0.0
3,435,258	+		LRK54_RS15570	0.34	-1.0
3,435,258	+		LRK54_RS15570	0.34	+0.2
3,435,258	+		LRK54_RS15570	0.34	-0.0
3,435,259	-		LRK54_RS15570	0.34	+0.2
3,435,259	-		LRK54_RS15570	0.34	+0.5
3,435,259	-		LRK54_RS15570	0.34	+0.2
3,435,259	-		LRK54_RS15570	0.34	+1.9
3,435,259	-		LRK54_RS15570	0.34	+1.9
3,435,259	-		LRK54_RS15570	0.34	+0.1
3,435,393	+		LRK54_RS15570	0.44	+0.7
3,435,393	+		LRK54_RS15570	0.44	-1.5
3,435,393	+		LRK54_RS15570	0.44	+0.7
3,435,394	-		LRK54_RS15570	0.44	+0.0
3,435,394	-		LRK54_RS15570	0.44	+0.3
3,435,394	-		LRK54_RS15570	0.44	+1.1
3,435,394	-		LRK54_RS15570	0.44	-1.0
3,435,477	-		LRK54_RS15570	0.51	-0.1