Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15500

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,421,820	+		LRK54_RS15495	0.47	+1.3
3,421,820	+		LRK54_RS15495	0.47	-2.3
3,421,820	+		LRK54_RS15495	0.47	-0.4
3,421,820	+		LRK54_RS15495	0.47	-0.3
3,421,820	+		LRK54_RS15495	0.47	+1.5
3,421,820	+		LRK54_RS15495	0.47	+1.1
3,421,820	+		LRK54_RS15495	0.47	-0.2
3,421,820	+		LRK54_RS15495	0.47	-1.6
3,421,821	-		LRK54_RS15495	0.47	-0.5
3,421,821	-		LRK54_RS15495	0.47	-0.7
3,421,821	-		LRK54_RS15495	0.47	+1.1
3,421,821	-		LRK54_RS15495	0.47	-0.6
3,421,821	-		LRK54_RS15495	0.47	+1.9
3,421,821	-		LRK54_RS15495	0.47	-0.7
3,421,821	-		LRK54_RS15495	0.47	-0.4
3,421,821	-		LRK54_RS15495	0.47	+0.3
3,421,821	-		LRK54_RS15495	0.47	-0.1
3,421,821	-		LRK54_RS15495	0.47	+0.7
3,421,821	-		LRK54_RS15495	0.47	-1.9
3,421,832	+		LRK54_RS15495	0.47	-2.2
3,421,832	+		LRK54_RS15495	0.47	-1.3
3,421,832	+		LRK54_RS15495	0.47	+0.0
3,421,832	+		LRK54_RS15495	0.47	+1.2
3,421,832	+		LRK54_RS15495	0.47	-0.0
3,421,832	+		LRK54_RS15495	0.47	-1.2
3,421,832	+		LRK54_RS15495	0.47	+0.9
3,421,832	+		LRK54_RS15495	0.47	+0.1
3,421,832	+		LRK54_RS15495	0.47	+3.3
3,421,832	+		LRK54_RS15495	0.47	-1.0
3,421,832	+		LRK54_RS15495	0.47	-0.2
3,421,832	+		LRK54_RS15495	0.47	+0.2
3,421,832	+		LRK54_RS15495	0.47	-0.3
3,421,832	+		LRK54_RS15495	0.47	+0.1
3,421,832	+		LRK54_RS15495	0.47	-0.3
3,421,832	+		LRK54_RS15495	0.47	-0.5
3,421,832	+		LRK54_RS15495	0.47	+1.3
3,421,832	+		LRK54_RS15495	0.47	-0.4
3,421,833	-		LRK54_RS15495	0.47	+1.1
3,421,833	-		LRK54_RS15495	0.47	-0.2
3,421,833	-		LRK54_RS15495	0.47	-1.2
3,421,833	-		LRK54_RS15495	0.47	-0.0
3,421,833	-		LRK54_RS15495	0.47	-1.2
3,421,847	+		LRK54_RS15495	0.48	-0.4
3,421,847	+		LRK54_RS15495	0.48	+0.3
3,421,847	+		LRK54_RS15495	0.48	-0.6
3,421,847	+		LRK54_RS15495	0.48	-0.2
3,421,848	-		LRK54_RS15495	0.48	-0.2
3,421,848	-		LRK54_RS15495	0.48	-2.1
3,421,931	+		LRK54_RS15495	0.53	+0.8
3,421,931	+		LRK54_RS15495	0.53	-1.0
3,421,931	+		LRK54_RS15495	0.53	-2.0
3,421,931	+		LRK54_RS15495	0.53	-0.2
3,421,931	+		LRK54_RS15495	0.53	-0.2
3,421,931	+		LRK54_RS15495	0.53	-0.6
3,421,931	+		LRK54_RS15495	0.53	-1.4
3,421,932	-		LRK54_RS15495	0.53	+0.6
3,421,932	-		LRK54_RS15495	0.53	+1.1
3,421,932	-		LRK54_RS15495	0.53	-0.3
3,421,932	-		LRK54_RS15495	0.53	-0.3
3,421,932	-		LRK54_RS15495	0.53	+1.3
3,421,932	-		LRK54_RS15495	0.53	+0.3
3,421,932	-		LRK54_RS15495	0.53	+0.1
3,421,932	-		LRK54_RS15495	0.53	+0.1
3,421,932	-		LRK54_RS15495	0.53	+1.1
3,421,932	-		LRK54_RS15495	0.53	+0.4
3,421,974	-		LRK54_RS15495	0.55	+0.3
3,421,976	+		LRK54_RS15495	0.55	+1.0
3,421,976	+		LRK54_RS15495	0.55	-0.9
3,421,976	+		LRK54_RS15495	0.55	-0.3
3,421,976	+		LRK54_RS15495	0.55	-0.7
3,421,976	+		LRK54_RS15495	0.55	+0.3
3,421,976	+		LRK54_RS15495	0.55	+1.5
3,421,976	+		LRK54_RS15495	0.55	-0.9
3,421,976	+		LRK54_RS15495	0.55	+0.2
3,421,976	+		LRK54_RS15495	0.55	-1.9
3,421,976	+		LRK54_RS15495	0.55	-1.6
3,421,977	-		LRK54_RS15495	0.56	-0.2
3,421,977	-		LRK54_RS15495	0.56	-0.7
3,421,977	-		LRK54_RS15495	0.56	+0.1
3,421,977	-		LRK54_RS15495	0.56	-0.7
3,421,977	-		LRK54_RS15495	0.56	+1.9
3,421,977	-		LRK54_RS15495	0.56	+2.0
3,421,977	-		LRK54_RS15495	0.56	+0.1
3,421,977	-		LRK54_RS15495	0.56	-1.4
3,421,977	-		LRK54_RS15495	0.56	+0.1
3,421,977	-		LRK54_RS15495	0.56	+1.9
3,422,168	+		LRK54_RS15495	0.66	+1.0
3,422,168	+		LRK54_RS15495	0.66	+0.1
3,422,168	+		LRK54_RS15495	0.66	-0.0
3,422,168	+		LRK54_RS15495	0.66	+1.0
3,422,168	+		LRK54_RS15495	0.66	-0.5
3,422,169	-		LRK54_RS15495	0.66	-0.3
3,422,169	-		LRK54_RS15495	0.66	-1.1
3,422,169	-		LRK54_RS15495	0.66	-0.5
3,422,169	-		LRK54_RS15495	0.66	-0.6
3,422,169	-		LRK54_RS15495	0.66	+1.3
3,422,191	-		LRK54_RS15495	0.68	-0.5
3,422,191	-		LRK54_RS15495	0.68	-1.4
3,422,191	-		LRK54_RS15495	0.68	-1.0
3,422,198	+		LRK54_RS15495	0.68	-0.5
3,422,199	-		LRK54_RS15495	0.68	+0.0
3,422,199	-		LRK54_RS15495	0.68	-1.0
3,422,246	+		LRK54_RS15495	0.71	-0.3
3,422,246	+		LRK54_RS15495	0.71	-1.1
3,422,246	+		LRK54_RS15495	0.71	-0.7
3,422,246	+		LRK54_RS15495	0.71	-1.0
3,422,246	+				-1.0
3,422,246	+		LRK54_RS15495	0.71	-0.3
3,422,246	+		LRK54_RS15495	0.71	-1.0
3,422,246	+		LRK54_RS15495	0.71	-0.1
3,422,246	+		LRK54_RS15495	0.71	+0.5
3,422,246	+		LRK54_RS15495	0.71	-0.1
3,422,246	+		LRK54_RS15495	0.71	-0.4
3,422,246	+		LRK54_RS15495	0.71	+0.4
3,422,247	-		LRK54_RS15495	0.71	+0.5
3,422,247	-		LRK54_RS15495	0.71	-0.9
3,422,247	-		LRK54_RS15495	0.71	-0.0
3,422,247	-		LRK54_RS15495	0.71	-0.7
3,422,247	-		LRK54_RS15495	0.71	-1.1
3,422,247	-		LRK54_RS15495	0.71	+0.6
3,422,247	-		LRK54_RS15495	0.71	-0.1
3,422,247	-		LRK54_RS15495	0.71	-0.5
3,422,247	-		LRK54_RS15495	0.71	-1.1
3,422,297	+		LRK54_RS15495	0.74	-0.0
3,422,297	+		LRK54_RS15495	0.74	-2.0
3,422,297	+		LRK54_RS15495	0.74	+0.4
3,422,297	+		LRK54_RS15495	0.74	-3.3
3,422,297	+		LRK54_RS15495	0.74	+0.4
3,422,297	+		LRK54_RS15495	0.74	-0.0
3,422,297	+		LRK54_RS15495	0.74	-0.1
3,422,297	+		LRK54_RS15495	0.74	+0.1
3,422,297	+		LRK54_RS15495	0.74	-1.0
3,422,297	+		LRK54_RS15495	0.74	-0.3
3,422,297	+		LRK54_RS15495	0.74	+0.6
3,422,297	+		LRK54_RS15495	0.74	+1.1
3,422,297	+		LRK54_RS15495	0.74	-0.6
3,422,297	+		LRK54_RS15495	0.74	-0.5
3,422,298	-		LRK54_RS15495	0.74	-1.1
3,422,298	-		LRK54_RS15495	0.74	+0.5
3,422,298	-		LRK54_RS15495	0.74	-0.4
3,422,298	-		LRK54_RS15495	0.74	+0.1
3,422,298	-		LRK54_RS15495	0.74	-1.1
3,422,384	+		LRK54_RS15495	0.78	-1.4
3,422,385	-		LRK54_RS15495	0.78	+0.7
3,422,495	+		LRK54_RS15495	0.85	+1.3
3,422,495	+		LRK54_RS15495	0.85	-0.5
3,422,495	+		LRK54_RS15495	0.85	+0.0
3,422,495	+		LRK54_RS15495	0.85	-0.8
3,422,495	+		LRK54_RS15495	0.85	-0.3
3,422,496	-		LRK54_RS15495	0.85	-1.4
3,422,496	-		LRK54_RS15495	0.85	-0.7
3,422,496	-		LRK54_RS15495	0.85	-0.4
3,422,496	-		LRK54_RS15495	0.85	+0.0
3,422,496	-		LRK54_RS15495	0.85	-0.8
3,422,496	-		LRK54_RS15495	0.85	-0.4
3,422,496	-		LRK54_RS15495	0.85	+0.9
3,422,496	-		LRK54_RS15495	0.85	+0.1
3,422,496	-		LRK54_RS15495	0.85	+0.2
3,422,496	-		LRK54_RS15495	0.85	-1.2
3,422,532	-		LRK54_RS15495	0.87	+0.5
3,422,532	-		LRK54_RS15495	0.87	-0.5
3,422,532	-		LRK54_RS15495	0.87	+0.4
3,422,925	+		LRK54_RS15500	0.27	-0.5
3,422,925	+		LRK54_RS15500	0.27	+0.3
3,422,926	-		LRK54_RS15500	0.27	-1.5
3,422,926	-		LRK54_RS15500	0.27	+1.2
3,423,063	-		LRK54_RS15500	0.52	+0.7
3,423,348	+				-0.4
3,423,348	+				+0.7
3,423,348	+				+0.6
3,423,348	+				-0.2
3,423,348	+				+0.1
3,423,348	+				-0.8
3,423,348	+				+0.9
3,423,348	+				+0.6
3,423,348	+				+0.6
3,423,348	+				-0.7
3,423,348	+				-2.0
3,423,348	+				-0.6
3,423,348	+				-0.2
3,423,348	+				-1.2
3,423,348	+				+0.1
3,423,348	+				-1.2
3,423,349	-				+0.3
3,423,349	-				+1.1
3,423,349	-				-0.2
3,423,349	-				-1.7
3,423,349	-				-0.2
3,423,349	-				-0.0
3,423,349	-				-0.1
3,423,349	-				+0.3
3,423,349	-				-1.5
3,423,349	-				+2.3
3,423,349	-				-0.8
3,423,349	-				+0.3
3,423,349	-				-0.4
3,423,643	+		LRK54_RS15505	0.13	+0.5
3,423,644	-		LRK54_RS15505	0.13	+0.3
3,423,644	-		LRK54_RS15505	0.13	-0.4
3,423,644	-		LRK54_RS15505	0.13	-1.6
3,423,751	+		LRK54_RS15505	0.19	-1.9
3,423,751	+		LRK54_RS15505	0.19	-0.5
3,423,751	+		LRK54_RS15505	0.19	+1.0
3,423,751	+		LRK54_RS15505	0.19	-0.2
3,423,752	-		LRK54_RS15505	0.19	+0.3
3,423,752	-		LRK54_RS15505	0.19	-0.1
3,423,752	-		LRK54_RS15505	0.19	-0.0
3,423,760	+		LRK54_RS15505	0.19	+1.5
3,423,760	+		LRK54_RS15505	0.19	+1.1
3,423,760	+		LRK54_RS15505	0.19	-1.0
3,423,760	+		LRK54_RS15505	0.19	-0.7
3,423,760	+		LRK54_RS15505	0.19	+0.7
3,423,760	+		LRK54_RS15505	0.19	-0.1
3,423,760	+		LRK54_RS15505	0.19	+0.1
3,423,761	-		LRK54_RS15505	0.19	-0.1
3,423,761	-		LRK54_RS15505	0.19	-0.4
3,423,761	-		LRK54_RS15505	0.19	-0.9
3,423,761	-		LRK54_RS15505	0.19	-0.5
3,423,761	-		LRK54_RS15505	0.19	+1.0
3,423,761	-		LRK54_RS15505	0.19	+0.9
3,423,761	-		LRK54_RS15505	0.19	-0.1
3,423,817	+		LRK54_RS15505	0.22	-0.2
3,423,817	+		LRK54_RS15505	0.22	-0.8
3,423,817	+		LRK54_RS15505	0.22	+0.2
3,423,817	+		LRK54_RS15505	0.22	+0.2
3,423,817	+		LRK54_RS15505	0.22	-0.7
3,423,817	+		LRK54_RS15505	0.22	-0.3
3,423,818	-		LRK54_RS15505	0.22	+0.9
3,423,818	-		LRK54_RS15505	0.22	+0.3
3,423,818	-		LRK54_RS15505	0.22	-0.7
3,423,818	-		LRK54_RS15505	0.22	+0.6
3,423,818	-		LRK54_RS15505	0.22	-0.2
3,423,818	-		LRK54_RS15505	0.22	+0.3
3,423,818	-		LRK54_RS15505	0.22	-0.5
3,423,999	+		LRK54_RS15505	0.31	-0.9
3,424,051	+		LRK54_RS15505	0.34	+0.1
3,424,051	+		LRK54_RS15505	0.34	-1.4
3,424,051	+		LRK54_RS15505	0.34	+0.8
3,424,052	-		LRK54_RS15505	0.34	+1.4
3,424,052	-		LRK54_RS15505	0.34	-1.4
3,424,052	-		LRK54_RS15505	0.34	-0.0
3,424,063	+		LRK54_RS15505	0.35	-0.4
3,424,064	-		LRK54_RS15505	0.35	-0.5
3,424,064	-		LRK54_RS15505	0.35	-0.7
3,424,064	-		LRK54_RS15505	0.35	+0.1
3,424,064	-		LRK54_RS15505	0.35	-0.3
3,424,064	-		LRK54_RS15505	0.35	+0.9
3,424,138	+		LRK54_RS15505	0.38	+0.7
3,424,138	+		LRK54_RS15505	0.38	-0.2
3,424,138	+		LRK54_RS15505	0.38	-0.2
3,424,139	-		LRK54_RS15505	0.38	+0.8
3,424,139	-		LRK54_RS15505	0.38	-0.7
3,424,139	-		LRK54_RS15505	0.38	+0.1
3,424,139	-		LRK54_RS15505	0.38	-0.9
3,424,139	-		LRK54_RS15505	0.38	-1.9
3,424,146	+		LRK54_RS15505	0.39	+0.3
3,424,146	+		LRK54_RS15505	0.39	+0.6
3,424,146	+		LRK54_RS15505	0.39	-2.4
3,424,147	-		LRK54_RS15505	0.39	-0.5
3,424,147	-		LRK54_RS15505	0.39	-0.2
3,424,147	-		LRK54_RS15505	0.39	-1.0
3,424,147	-		LRK54_RS15505	0.39	+0.5
3,424,147	-		LRK54_RS15505	0.39	-0.2
3,424,147	-		LRK54_RS15505	0.39	-1.3
3,424,220	-		LRK54_RS15505	0.43	-1.3
3,424,220	-		LRK54_RS15505	0.43	-0.5
3,424,220	-		LRK54_RS15505	0.43	-0.3
3,424,228	+		LRK54_RS15505	0.43	-0.2
3,424,228	+		LRK54_RS15505	0.43	-0.1
3,424,229	-		LRK54_RS15505	0.43	-0.0
3,424,229	-		LRK54_RS15505	0.43	-0.4
3,424,229	-		LRK54_RS15505	0.43	-0.8
3,424,315	+		LRK54_RS15505	0.47	-0.5
3,424,315	+		LRK54_RS15505	0.47	+0.2
3,424,315	+		LRK54_RS15505	0.47	-0.2
3,424,315	+		LRK54_RS15505	0.47	-0.9
3,424,316	-		LRK54_RS15505	0.48	+0.4
3,424,316	-		LRK54_RS15505	0.48	-0.8
3,424,316	-		LRK54_RS15505	0.48	+0.1
3,424,316	-		LRK54_RS15505	0.48	+0.1