Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14845

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,281,628	+		LRK54_RS14840	0.20	-0.1
3,281,629	-		LRK54_RS14840	0.20	+1.2
3,281,629	-		LRK54_RS14840	0.20	-1.1
3,281,629	-		LRK54_RS14840	0.20	-0.0
3,281,667	+		LRK54_RS14840	0.24	+1.4
3,281,667	+		LRK54_RS14840	0.24	-0.2
3,281,667	+		LRK54_RS14840	0.24	-0.2
3,281,667	+		LRK54_RS14840	0.24	-1.8
3,281,667	+		LRK54_RS14840	0.24	-0.8
3,281,668	-		LRK54_RS14840	0.24	-0.5
3,281,668	-		LRK54_RS14840	0.24	+0.4
3,281,668	-		LRK54_RS14840	0.24	-0.9
3,281,668	-		LRK54_RS14840	0.24	+0.2
3,281,668	-		LRK54_RS14840	0.24	-0.2
3,281,734	-		LRK54_RS14840	0.31	-0.5
3,281,734	-		LRK54_RS14840	0.31	+0.8
3,281,775	+		LRK54_RS14840	0.35	-0.2
3,281,775	+		LRK54_RS14840	0.35	-0.2
3,281,775	+		LRK54_RS14840	0.35	-0.6
3,281,775	+		LRK54_RS14840	0.35	+0.0
3,281,775	+		LRK54_RS14840	0.35	-0.0
3,281,776	-		LRK54_RS14840	0.35	-0.5
3,281,776	-		LRK54_RS14840	0.35	-0.8
3,281,776	-		LRK54_RS14840	0.35	-1.4
3,281,776	-		LRK54_RS14840	0.35	-0.3
3,281,776	-		LRK54_RS14840	0.35	-0.7
3,281,776	-		LRK54_RS14840	0.35	+0.4
3,281,855	+		LRK54_RS14840	0.44	-0.9
3,281,855	+		LRK54_RS14840	0.44	+0.2
3,281,855	+		LRK54_RS14840	0.44	+0.3
3,281,855	+		LRK54_RS14840	0.44	+0.3
3,281,855	+		LRK54_RS14840	0.44	-1.2
3,281,855	+		LRK54_RS14840	0.44	-0.0
3,281,856	-		LRK54_RS14840	0.44	+0.9
3,281,856	-		LRK54_RS14840	0.44	-0.0
3,281,856	-		LRK54_RS14840	0.44	-2.5
3,281,856	-		LRK54_RS14840	0.44	-0.7
3,281,856	-		LRK54_RS14840	0.44	-0.1
3,281,856	-		LRK54_RS14840	0.44	-0.9
3,281,856	-		LRK54_RS14840	0.44	+0.4
3,281,856	-		LRK54_RS14840	0.44	-1.0
3,281,912	+		LRK54_RS14840	0.49	+0.3
3,281,912	+		LRK54_RS14840	0.49	-0.6
3,281,912	+		LRK54_RS14840	0.49	-0.8
3,281,912	+		LRK54_RS14840	0.49	-0.4
3,281,912	+		LRK54_RS14840	0.49	-0.3
3,281,912	+		LRK54_RS14840	0.49	+1.4
3,281,912	+		LRK54_RS14840	0.49	-0.9
3,281,913	-		LRK54_RS14840	0.50	-0.3
3,281,913	-		LRK54_RS14840	0.50	-0.3
3,281,913	-		LRK54_RS14840	0.50	-0.3
3,281,913	-		LRK54_RS14840	0.50	-0.0
3,281,913	-		LRK54_RS14840	0.50	-1.2
3,281,913	-		LRK54_RS14840	0.50	+0.6
3,281,913	-		LRK54_RS14840	0.50	-0.5
3,282,050	+		LRK54_RS14840	0.64	-1.1
3,282,050	+		LRK54_RS14840	0.64	-2.5
3,282,051	-		LRK54_RS14840	0.64	-0.1
3,282,051	-		LRK54_RS14840	0.64	+0.3
3,282,142	+		LRK54_RS14840	0.73	-1.8
3,282,143	-		LRK54_RS14840	0.73	+1.4
3,282,159	+		LRK54_RS14840	0.75	+0.1
3,282,159	+		LRK54_RS14840	0.75	+0.3
3,282,160	-		LRK54_RS14840	0.75	-0.2
3,282,160	-		LRK54_RS14840	0.75	-0.9
3,282,160	-		LRK54_RS14840	0.75	+1.3
3,282,160	-		LRK54_RS14840	0.75	-0.2
3,282,290	+		LRK54_RS14840	0.88	-0.7
3,282,290	+		LRK54_RS14840	0.88	+0.9
3,282,290	+		LRK54_RS14840	0.88	+0.2
3,282,291	-		LRK54_RS14840	0.88	-0.5
3,282,291	-		LRK54_RS14840	0.88	+1.0
3,282,291	-		LRK54_RS14840	0.88	-1.2
3,282,320	+				+0.3
3,282,321	-				+0.2
3,282,321	-				+0.2
3,282,402	+				-0.3
3,282,402	+				-0.6
3,282,402	+				-0.0
3,282,402	+				+0.3
3,282,402	+				+0.2
3,282,403	-				-2.0
3,282,403	-				-0.7
3,282,403	-				+0.1
3,282,440	+				+2.3
3,282,440	+				-0.2
3,282,440	+				-1.6
3,282,441	-				+0.3
3,282,441	-				-1.2
3,282,475	+				-0.6
3,282,476	-				+1.5
3,282,484	-				+0.3
3,282,563	+				-0.3
3,282,563	+				+0.5
3,282,563	+				+0.3
3,282,563	+				-0.3
3,282,563	+				+0.1
3,282,563	+				+0.7
3,282,563	+				-0.2
3,282,564	-				-1.4
3,282,564	-				-0.5
3,282,564	-				+1.3
3,282,564	-				-0.1
3,282,564	-				-0.0
3,282,564	-				+0.3
3,282,564	-				+0.5
3,282,566	+				-0.0
3,282,566	+				-1.4
3,282,566	+				-0.1
3,282,566	+				+1.0
3,282,566	+				+0.6
3,282,566	+				-1.3
3,282,566	+				+0.1
3,282,566	+				-0.5
3,282,566	+				-0.8
3,282,566	+				-0.9
3,282,566	+				-0.2
3,282,566	+				-0.2
3,282,567	-				-0.1
3,282,567	-				+0.2
3,282,567	-				-0.5
3,282,567	-				+0.3
3,282,567	-				-0.5
3,282,567	-				+2.3
3,282,567	-				+0.7
3,282,567	-				-0.8
3,282,614	+				-0.3
3,282,614	+				-1.5
3,282,614	+				+0.2
3,282,614	+				+0.1
3,282,614	+				-1.1
3,282,614	+				-0.3
3,282,614	+				+1.3
3,282,614	+				-0.5
3,282,614	+				-1.0
3,282,614	+				-2.4
3,282,614	+				-0.2
3,282,614	+				-0.4
3,282,615	-				-0.4
3,282,615	-				+0.7
3,282,615	-				+1.3
3,282,615	-				-0.6
3,282,615	-				-0.5
3,282,615	-				-0.3
3,282,615	-				-0.2
3,282,615	-				+0.2
3,282,658	-		LRK54_RS14845	0.45	+0.3
3,282,719	+				-0.1
3,282,719	+				+0.8
3,282,719	+				+0.5
3,282,719	+				-0.0
3,282,719	+				-0.1
3,282,719	+				-1.0
3,282,719	+				+1.1
3,282,719	+				-0.8
3,282,719	+				-0.4
3,282,719	+				-0.0
3,282,719	+				+0.2
3,282,719	+				+0.5
3,282,720	-				+0.1
3,282,720	-				-0.2
3,282,720	-				+1.6
3,282,720	-				+0.5
3,282,720	-				+0.4
3,282,720	-				-1.0
3,282,720	-				+0.9
3,282,720	-				-0.0
3,282,720	-				-0.5
3,282,720	-				+0.1
3,282,720	-				+0.4
3,282,720	-				+0.5
3,282,720	-				+0.6
3,282,720	-				-2.1
3,282,720	-				-0.3
3,282,720	-				+0.1
3,282,822	+				+0.2
3,282,822	+				+1.3
3,282,823	-				-2.6
3,282,909	+		LRK54_RS14850	0.15	+0.9
3,282,909	+		LRK54_RS14850	0.15	+1.5
3,282,910	-		LRK54_RS14850	0.16	+0.4
3,283,029	+		LRK54_RS14850	0.36	-1.2
3,283,029	+		LRK54_RS14850	0.36	+0.5
3,283,029	+		LRK54_RS14850	0.36	+1.6
3,283,029	+		LRK54_RS14850	0.36	-0.6
3,283,061	+		LRK54_RS14850	0.42	-0.1
3,283,061	+		LRK54_RS14850	0.42	+0.8
3,283,061	+		LRK54_RS14850	0.42	-0.9
3,283,061	+		LRK54_RS14850	0.42	-0.3
3,283,061	+		LRK54_RS14850	0.42	+1.2
3,283,061	+		LRK54_RS14850	0.42	-0.1
3,283,061	+		LRK54_RS14850	0.42	+0.9
3,283,062	-		LRK54_RS14850	0.42	-0.2
3,283,062	-		LRK54_RS14850	0.42	-1.0
3,283,062	-		LRK54_RS14850	0.42	-0.9
3,283,062	-		LRK54_RS14850	0.42	-0.3
3,283,062	-		LRK54_RS14850	0.42	+0.2
3,283,062	-		LRK54_RS14850	0.42	-0.2
3,283,062	-		LRK54_RS14850	0.42	+1.9
3,283,062	-		LRK54_RS14850	0.42	-0.2
3,283,062	-		LRK54_RS14850	0.42	-0.4
3,283,083	+		LRK54_RS14850	0.46	-1.6
3,283,083	+		LRK54_RS14850	0.46	+0.2
3,283,083	+		LRK54_RS14850	0.46	+0.5
3,283,083	+		LRK54_RS14850	0.46	-0.9
3,283,084	-		LRK54_RS14850	0.46	-1.2
3,283,084	-		LRK54_RS14850	0.46	+0.0
3,283,455	+				-1.2
3,283,467	+				-0.9