Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14670

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,250,294	+				-1.3
3,250,294	+				+2.3
3,250,294	+				+0.1
3,250,294	+				-0.1
3,250,294	+				+0.4
3,250,295	-				-0.3
3,250,295	-				-0.6
3,250,295	-				-0.0
3,250,295	-				-0.7
3,250,295	-				-0.3
3,250,308	-				-0.6
3,250,308	-				-0.6
3,250,308	-				+0.1
3,250,333	-				-0.5
3,250,358	+				-0.9
3,250,358	+				-0.3
3,250,358	+				+0.0
3,250,359	-				-0.4
3,250,359	-				+0.8
3,250,383	+				-0.5
3,250,383	+				-1.2
3,250,383	+				+1.0
3,250,384	-				-1.3
3,250,384	-				-0.1
3,250,384	-				-0.7
3,250,400	+				-0.6
3,250,400	+				-0.4
3,250,400	+				-1.2
3,250,400	+				-1.1
3,250,400	+				-0.2
3,250,400	+				+1.1
3,250,400	+				-0.4
3,250,400	+				-0.9
3,250,400	+				+0.9
3,250,401	-				-0.1
3,250,401	-				-0.3
3,250,401	-				-0.2
3,250,401	-				-2.0
3,250,401	-				-0.2
3,250,401	-				+0.7
3,250,401	-				+0.7
3,250,401	-				+0.2
3,250,401	-				-0.7
3,250,401	-				+0.3
3,250,401	-				-1.0
3,250,401	-				+1.3
3,250,425	+				+0.7
3,250,425	+				+0.0
3,250,425	+				-1.1
3,250,425	+				-0.9
3,250,426	-				-0.5
3,250,426	-				-0.9
3,250,426	-				-1.1
3,250,426	-				-0.1
3,250,426	-				-0.1
3,250,426	-				+0.3
3,250,426	-				-0.3
3,250,426	-				+0.4
3,250,426	-				-0.7
3,250,426	-				+0.1
3,250,494	+				-2.1
3,250,494	+				+0.1
3,250,494	+				-0.2
3,250,494	+				+1.5
3,250,494	+				+0.2
3,250,494	+				+0.3
3,250,495	-				-0.1
3,250,495	-				-0.1
3,250,495	-				-0.1
3,250,495	-				-0.5
3,250,495	-				+2.0
3,250,495	-				+0.4
3,250,495	-				-0.5
3,250,495	-				-0.2
3,250,495	-				-0.6
3,250,495	-				-0.5
3,250,495	-				-0.1
3,250,495	-				+0.4
3,250,495	-				-0.3
3,250,495	-				+1.2
3,250,498	+				-0.6
3,250,498	+				-0.9
3,250,498	+				-0.9
3,250,499	-				-0.0
3,250,499	-				+0.3
3,250,499	-				-0.5
3,250,499	-				+1.0
3,250,499	-				+0.9
3,250,499	-				-2.1
3,250,499	-				-0.5
3,250,503	+				+0.4
3,250,503	+				-0.3
3,250,503	+				-1.8
3,250,503	+				-0.1
3,250,503	+				+0.5
3,250,503	+				-0.5
3,250,503	+				-0.1
3,250,503	+				+0.4
3,250,503	+				-0.2
3,250,503	+				+0.3
3,250,503	+				+1.5
3,250,503	+				-0.3
3,250,503	+				-0.3
3,250,503	+				-0.1
3,250,503	+				-0.6
3,250,503	+				+0.3
3,250,503	+				-1.1
3,250,503	+				+0.3
3,250,503	+				+1.5
3,250,503	+				+0.6
3,250,503	+				-0.0
3,250,503	+				-2.0
3,250,503	+				+0.3
3,250,503	+				+0.0
3,250,503	+				+1.5
3,250,503	+				+0.7
3,250,503	+				-1.2
3,250,504	-				+1.3
3,250,504	-				-1.6
3,250,504	-				-1.4
3,250,504	-				-0.9
3,250,504	-				+0.1
3,250,504	-				+0.9
3,250,504	-				-1.1
3,250,504	-				+0.7
3,250,504	-				-0.5
3,250,504	-				-0.5
3,250,504	-				+0.3
3,250,504	-				-0.3
3,250,504	-				-0.3
3,250,504	-				+0.1
3,250,504	-				-0.3
3,250,504	-				-0.8
3,250,504	-				-1.5
3,250,504	-				-2.1
3,250,504	-				+0.7
3,250,504	-				+0.5
3,250,504	-				-2.5
3,250,504	-				-1.2
3,250,504	-				-0.4
3,250,504	-				-1.4
3,250,504	-				-0.5
3,250,504	-				+0.1
3,250,504	-				-1.4
3,250,504	-				-0.5
3,250,504	-				-0.3
3,250,504	-				+0.3
3,250,504	-				-0.8
3,250,631	+		LRK54_RS14665	0.26	-0.9
3,250,632	-		LRK54_RS14665	0.26	+0.1
3,250,760	+		LRK54_RS14665	0.45	-0.3
3,250,760	+		LRK54_RS14665	0.45	+0.8
3,250,760	+		LRK54_RS14665	0.45	-1.0
3,250,760	+		LRK54_RS14665	0.45	-0.5
3,250,760	+		LRK54_RS14665	0.45	-0.2
3,250,760	+		LRK54_RS14665	0.45	-0.0
3,250,760	+		LRK54_RS14665	0.45	-0.2
3,250,760	+		LRK54_RS14665	0.45	+0.3
3,250,760	+		LRK54_RS14665	0.45	-0.2
3,250,760	+		LRK54_RS14665	0.45	+0.7
3,250,761	-		LRK54_RS14665	0.46	+0.3
3,250,761	-		LRK54_RS14665	0.46	+0.9
3,250,761	-		LRK54_RS14665	0.46	-0.9
3,250,761	-		LRK54_RS14665	0.46	-1.5
3,250,761	-				-0.1
3,250,761	-		LRK54_RS14665	0.46	+0.2
3,250,761	-		LRK54_RS14665	0.46	+0.6
3,250,761	-		LRK54_RS14665	0.46	-0.7
3,250,761	-		LRK54_RS14665	0.46	-0.1
3,250,778	+		LRK54_RS14665	0.48	-1.2
3,250,778	+		LRK54_RS14665	0.48	-0.2
3,250,778	+		LRK54_RS14665	0.48	+1.3
3,250,778	+		LRK54_RS14665	0.48	-0.9
3,250,778	+		LRK54_RS14665	0.48	+1.3
3,250,778	+		LRK54_RS14665	0.48	+0.6
3,250,778	+		LRK54_RS14665	0.48	+0.3
3,250,778	+		LRK54_RS14665	0.48	+0.5
3,250,778	+		LRK54_RS14665	0.48	-1.0
3,250,778	+		LRK54_RS14665	0.48	+0.3
3,250,779	-		LRK54_RS14665	0.48	-0.3
3,250,779	-		LRK54_RS14665	0.48	-1.2
3,250,779	-		LRK54_RS14665	0.48	-0.4
3,250,779	-		LRK54_RS14665	0.48	-0.2
3,250,779	-		LRK54_RS14665	0.48	+1.1
3,250,779	-		LRK54_RS14665	0.48	-0.1
3,250,779	-		LRK54_RS14665	0.48	+0.6
3,251,271	+		LRK54_RS14670	0.22	-1.0
3,251,272	-		LRK54_RS14670	0.22	+0.7
3,251,632	+		LRK54_RS14670	0.77	-1.5
3,251,632	+		LRK54_RS14670	0.77	-0.8
3,252,150	+		LRK54_RS14675	0.76	-0.4
3,252,150	+		LRK54_RS14675	0.76	-0.0
3,252,150	+		LRK54_RS14675	0.76	+0.1
3,252,150	+		LRK54_RS14675	0.76	-0.5
3,252,150	+		LRK54_RS14675	0.76	-1.0
3,252,150	+		LRK54_RS14675	0.76	-0.3
3,252,151	-		LRK54_RS14675	0.76	-0.3
3,252,151	-		LRK54_RS14675	0.76	-0.7
3,252,151	-		LRK54_RS14675	0.76	-0.2
3,252,151	-		LRK54_RS14675	0.76	-0.4
3,252,151	-		LRK54_RS14675	0.76	-0.0
3,252,151	-		LRK54_RS14675	0.76	-1.0
3,252,151	-		LRK54_RS14675	0.76	-0.1
3,252,151	-		LRK54_RS14675	0.76	+0.4
3,252,151	-		LRK54_RS14675	0.76	-1.5
3,252,151	-		LRK54_RS14675	0.76	-0.0
3,252,151	-		LRK54_RS14675	0.76	+0.8
3,252,151	-		LRK54_RS14675	0.76	-0.9
3,252,151	-		LRK54_RS14675	0.76	+0.6
3,252,151	-		LRK54_RS14675	0.76	+0.6
3,252,298	+				-0.9
3,252,298	+				-0.3
3,252,298	+				+0.3
3,252,298	+				-1.0
3,252,298	+				-0.5
3,252,298	+				+1.8
3,252,298	+				+0.1
3,252,298	+				-0.2
3,252,299	-				-0.2
3,252,299	-				-0.8
3,252,299	-				+1.7
3,252,299	-				-1.4
3,252,299	-				-0.0
3,252,299	-				+0.5
3,252,299	-				+0.6
3,252,299	-				-0.3
3,252,299	-				-0.0
3,252,318	+				-1.0
3,252,373	+				-1.2
3,252,373	+				-0.3
3,252,373	+				-0.3
3,252,373	+				-0.4
3,252,373	+				+1.1
3,252,373	+				-1.3
3,252,373	+				-0.0
3,252,373	+				+0.0
3,252,373	+				+0.3
3,252,373	+				-0.6
3,252,373	+				+1.2
3,252,373	+				+1.2
3,252,373	+				-0.3
3,252,373	+				+0.4
3,252,373	+				-0.7
3,252,373	+				+0.1
3,252,373	+				-0.3
3,252,373	+				-0.6
3,252,373	+				-0.4
3,252,373	+				+1.3
3,252,373	+				-0.7
3,252,373	+				+0.7
3,252,374	-				+0.2
3,252,374	-				-0.3
3,252,374	-				-0.9
3,252,374	-				+1.7
3,252,374	-				-1.5
3,252,374	-				-0.7
3,252,374	-				+0.3
3,252,374	-				-0.9
3,252,374	-				+0.7
3,252,374	-				-1.2
3,252,374	-				+1.0
3,252,374	-				-0.4
3,252,374	-				-0.4
3,252,374	-				-0.1
3,252,374	-				+0.2
3,252,374	-				-0.7
3,252,374	-				-0.5
3,252,374	-				-2.6
3,252,374	-				-0.4
3,252,444	+				+1.0
3,252,444	+				+0.1
3,252,444	+				+0.7
3,252,444	+				-0.1
3,252,444	+				-1.9
3,252,444	+				+0.5
3,252,444	+				-0.6
3,252,444	+				-0.9
3,252,444	+				+0.1
3,252,444	+				-2.0
3,252,444	+				-0.6
3,252,444	+				+1.7
3,252,444	+				-0.1
3,252,444	+				+0.3
3,252,444	+				-0.9
3,252,444	+				-0.2
3,252,444	+				+0.8
3,252,444	+				-0.1
3,252,444	+				-0.9
3,252,444	+				-2.8
3,252,444	+				+1.5
3,252,445	-				-0.1
3,252,445	-				-0.4
3,252,445	-				-0.1
3,252,445	-				-0.6
3,252,445	-				+2.3
3,252,445	-				-1.9
3,252,445	-				+0.0
3,252,445	-				+0.1
3,252,445	-				-0.3
3,252,445	-				-0.3
3,252,608	+		LRK54_RS14680	0.13	-0.6
3,252,609	-		LRK54_RS14680	0.13	-0.6
3,252,630	+		LRK54_RS14680	0.15	-0.4
3,252,630	+		LRK54_RS14680	0.15	-0.0
3,252,630	+		LRK54_RS14680	0.15	-0.0
3,252,630	+		LRK54_RS14680	0.15	+0.3
3,252,630	+		LRK54_RS14680	0.15	+1.3
3,252,630	+		LRK54_RS14680	0.15	-0.4
3,252,630	+		LRK54_RS14680	0.15	-0.3
3,252,630	+		LRK54_RS14680	0.15	+0.1
3,252,630	+		LRK54_RS14680	0.15	+0.4
3,252,630	+		LRK54_RS14680	0.15	-0.0
3,252,630	+		LRK54_RS14680	0.15	-0.5
3,252,630	+		LRK54_RS14680	0.15	-0.6
3,252,630	+		LRK54_RS14680	0.15	-0.3
3,252,630	+		LRK54_RS14680	0.15	-0.4
3,252,630	+		LRK54_RS14680	0.15	-0.9
3,252,630	+		LRK54_RS14680	0.15	+0.9
3,252,630	+		LRK54_RS14680	0.15	-1.0
3,252,630	+		LRK54_RS14680	0.15	-0.7
3,252,630	+		LRK54_RS14680	0.15	+0.1
3,252,630	+		LRK54_RS14680	0.15	-0.1
3,252,630	+		LRK54_RS14680	0.15	-0.0
3,252,630	+		LRK54_RS14680	0.15	+1.3
3,252,630	+		LRK54_RS14680	0.15	-0.0
3,252,630	+		LRK54_RS14680	0.15	-1.0
3,252,630	+		LRK54_RS14680	0.15	+0.2
3,252,630	+		LRK54_RS14680	0.15	-0.4
3,252,631	-		LRK54_RS14680	0.15	+0.8
3,252,631	-		LRK54_RS14680	0.15	+0.1
3,252,631	-		LRK54_RS14680	0.15	+0.1
3,252,631	-		LRK54_RS14680	0.15	-0.0
3,252,631	-		LRK54_RS14680	0.15	-0.1
3,252,631	-		LRK54_RS14680	0.15	+1.3
3,252,631	-		LRK54_RS14680	0.15	-0.3
3,252,631	-		LRK54_RS14680	0.15	-0.5
3,252,631	-		LRK54_RS14680	0.15	-0.2
3,252,631	-		LRK54_RS14680	0.15	+0.4
3,252,631	-		LRK54_RS14680	0.15	-0.8
3,252,631	-		LRK54_RS14680	0.15	+1.1
3,252,631	-		LRK54_RS14680	0.15	-1.0
3,252,631	-		LRK54_RS14680	0.15	+0.8
3,252,631	-		LRK54_RS14680	0.15	+0.3
3,252,631	-		LRK54_RS14680	0.15	-2.2
3,252,631	-		LRK54_RS14680	0.15	-1.0
3,252,631	-		LRK54_RS14680	0.15	-2.0
3,252,631	-		LRK54_RS14680	0.15	-0.1
3,252,631	-		LRK54_RS14680	0.15	+1.4
3,252,675	+		LRK54_RS14680	0.18	-0.8
3,252,675	+		LRK54_RS14680	0.18	-1.0
3,252,675	+		LRK54_RS14680	0.18	-0.3
3,252,676	-		LRK54_RS14680	0.18	+1.6
3,252,676	-		LRK54_RS14680	0.18	+0.4
3,252,676	-		LRK54_RS14680	0.18	+1.1
3,252,723	+		LRK54_RS14680	0.22	-0.5
3,252,724	-		LRK54_RS14680	0.22	-1.2
3,252,724	-		LRK54_RS14680	0.22	+1.0