Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14525

Experiment: R2A with FW104 filtrate 0.5 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS14515 and LRK54_RS14520 are separated by 83 nucleotidesLRK54_RS14520 and LRK54_RS14525 are separated by 106 nucleotidesLRK54_RS14525 and LRK54_RS14530 overlap by 4 nucleotidesLRK54_RS14530 and LRK54_RS14535 are separated by 26 nucleotidesLRK54_RS14535 and LRK54_RS14540 are separated by 9 nucleotides LRK54_RS14515: LRK54_RS14515 - SCO family protein, at 3,224,364 to 3,224,981 _RS14515 LRK54_RS14520: LRK54_RS14520 - DUF423 domain-containing protein, at 3,225,065 to 3,225,442 _RS14520 LRK54_RS14525: LRK54_RS14525 - hypothetical protein, at 3,225,549 to 3,225,905 _RS14525 LRK54_RS14530: LRK54_RS14530 - CPBP family glutamic-type intramembrane protease, at 3,225,902 to 3,226,672 _RS14530 LRK54_RS14535: LRK54_RS14535 - hypothetical protein, at 3,226,699 to 3,226,893 _RS14535 LRK54_RS14540: LRK54_RS14540 - SPFH domain-containing protein, at 3,226,903 to 3,227,778 _RS14540 Position (kb) 3225 3226Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3224.565 kb on + strand, within LRK54_RS14515at 3224.774 kb on - strand, within LRK54_RS14515at 3224.784 kb on + strand, within LRK54_RS14515at 3225.014 kb on + strandat 3225.014 kb on + strandat 3225.014 kb on + strandat 3225.014 kb on + strandat 3225.014 kb on + strandat 3225.014 kb on + strandat 3225.014 kb on + strandat 3225.014 kb on + strandat 3225.014 kb on + strandat 3225.015 kb on - strandat 3225.015 kb on - strandat 3225.015 kb on - strandat 3225.015 kb on - strandat 3225.015 kb on - strandat 3225.015 kb on - strandat 3225.015 kb on - strandat 3225.015 kb on - strandat 3225.015 kb on - strandat 3225.015 kb on - strandat 3225.015 kb on - strandat 3225.015 kb on - strandat 3225.015 kb on - strandat 3225.015 kb on - strandat 3225.015 kb on - strandat 3225.015 kb on - strandat 3225.015 kb on - strandat 3225.083 kb on - strandat 3225.196 kb on + strand, within LRK54_RS14520at 3225.196 kb on + strand, within LRK54_RS14520at 3225.196 kb on + strand, within LRK54_RS14520at 3225.196 kb on + strand, within LRK54_RS14520at 3225.197 kb on - strand, within LRK54_RS14520at 3225.197 kb on - strand, within LRK54_RS14520at 3225.197 kb on - strand, within LRK54_RS14520at 3225.197 kb on - strand, within LRK54_RS14520at 3225.209 kb on + strand, within LRK54_RS14520at 3225.209 kb on + strand, within LRK54_RS14520at 3225.209 kb on + strand, within LRK54_RS14520at 3225.209 kb on + strand, within LRK54_RS14520at 3225.209 kb on + strand, within LRK54_RS14520at 3225.209 kb on + strand, within LRK54_RS14520at 3225.209 kb on + strand, within LRK54_RS14520at 3225.209 kb on + strand, within LRK54_RS14520at 3225.209 kb on + strand, within LRK54_RS14520at 3225.209 kb on + strand, within LRK54_RS14520at 3225.209 kb on + strand, within LRK54_RS14520at 3225.210 kb on - strand, within LRK54_RS14520at 3225.210 kb on - strand, within LRK54_RS14520at 3225.210 kb on - strand, within LRK54_RS14520at 3225.210 kb on - strand, within LRK54_RS14520at 3225.210 kb on - strand, within LRK54_RS14520at 3225.210 kb on - strand, within LRK54_RS14520at 3225.210 kb on - strand, within LRK54_RS14520at 3225.210 kb on - strand, within LRK54_RS14520at 3225.210 kb on - strand, within LRK54_RS14520at 3225.210 kb on - strand, within LRK54_RS14520at 3225.326 kb on + strand, within LRK54_RS14520at 3225.326 kb on + strand, within LRK54_RS14520at 3225.326 kb on + strand, within LRK54_RS14520at 3225.326 kb on + strand, within LRK54_RS14520at 3225.326 kb on + strand, within LRK54_RS14520at 3225.326 kb on + strand, within LRK54_RS14520at 3225.326 kb on + strand, within LRK54_RS14520at 3225.327 kb on - strand, within LRK54_RS14520at 3225.327 kb on - strand, within LRK54_RS14520at 3225.327 kb on - strand, within LRK54_RS14520at 3225.327 kb on - strand, within LRK54_RS14520at 3225.434 kb on - strandat 3225.440 kb on + strandat 3225.440 kb on + strandat 3225.440 kb on + strandat 3225.440 kb on + strandat 3225.440 kb on + strandat 3225.440 kb on + strandat 3225.440 kb on + strandat 3225.440 kb on + strandat 3225.440 kb on + strandat 3225.440 kb on + strandat 3225.440 kb on + strandat 3225.441 kb on - strandat 3225.441 kb on - strandat 3225.441 kb on - strandat 3225.441 kb on - strandat 3225.441 kb on - strandat 3225.441 kb on - strandat 3225.441 kb on - strandat 3225.732 kb on + strand, within LRK54_RS14525at 3225.732 kb on + strand, within LRK54_RS14525at 3225.732 kb on + strand, within LRK54_RS14525at 3225.732 kb on + strand, within LRK54_RS14525at 3225.732 kb on + strand, within LRK54_RS14525at 3225.732 kb on + strand, within LRK54_RS14525at 3225.733 kb on - strand, within LRK54_RS14525at 3225.733 kb on - strand, within LRK54_RS14525at 3225.733 kb on - strand, within LRK54_RS14525at 3225.733 kb on - strand, within LRK54_RS14525at 3225.733 kb on - strand, within LRK54_RS14525at 3225.733 kb on - strand, within LRK54_RS14525at 3225.903 kb on + strandat 3225.984 kb on + strand, within LRK54_RS14530at 3225.984 kb on + strand, within LRK54_RS14530at 3225.985 kb on - strand, within LRK54_RS14530at 3225.985 kb on - strand, within LRK54_RS14530at 3225.985 kb on - strand, within LRK54_RS14530at 3225.985 kb on - strand, within LRK54_RS14530at 3225.985 kb on - strand, within LRK54_RS14530at 3225.985 kb on - strand, within LRK54_RS14530at 3225.985 kb on - strand, within LRK54_RS14530at 3225.985 kb on - strand, within LRK54_RS14530at 3225.985 kb on - strand, within LRK54_RS14530at 3225.985 kb on - strand, within LRK54_RS14530at 3225.985 kb on - strand, within LRK54_RS14530at 3226.242 kb on + strand, within LRK54_RS14530at 3226.242 kb on + strand, within LRK54_RS14530at 3226.242 kb on + strand, within LRK54_RS14530at 3226.243 kb on - strand, within LRK54_RS14530at 3226.243 kb on - strand, within LRK54_RS14530at 3226.243 kb on - strand, within LRK54_RS14530at 3226.243 kb on - strand, within LRK54_RS14530at 3226.435 kb on - strand, within LRK54_RS14530at 3226.449 kb on + strand, within LRK54_RS14530at 3226.449 kb on + strand, within LRK54_RS14530at 3226.450 kb on - strand, within LRK54_RS14530at 3226.450 kb on - strand, within LRK54_RS14530at 3226.450 kb on - strand, within LRK54_RS14530at 3226.450 kb on - strand, within LRK54_RS14530at 3226.450 kb on - strand, within LRK54_RS14530at 3226.450 kb on - strand, within LRK54_RS14530at 3226.450 kb on - strand, within LRK54_RS14530at 3226.450 kb on - strand, within LRK54_RS14530at 3226.450 kb on - strand, within LRK54_RS14530at 3226.569 kb on + strand, within LRK54_RS14530at 3226.784 kb on + strand, within LRK54_RS14535at 3226.784 kb on + strand, within LRK54_RS14535at 3226.784 kb on + strand, within LRK54_RS14535at 3226.784 kb on + strand, within LRK54_RS14535at 3226.784 kb on + strand, within LRK54_RS14535at 3226.784 kb on + strand, within LRK54_RS14535at 3226.784 kb on + strand, within LRK54_RS14535at 3226.784 kb on + strand, within LRK54_RS14535at 3226.784 kb on + strand, within LRK54_RS14535at 3226.785 kb on - strand, within LRK54_RS14535at 3226.785 kb on - strand, within LRK54_RS14535at 3226.785 kb on - strand, within LRK54_RS14535at 3226.785 kb on - strand, within LRK54_RS14535at 3226.785 kb on - strand, within LRK54_RS14535at 3226.785 kb on - strand, within LRK54_RS14535at 3226.785 kb on - strand, within LRK54_RS14535at 3226.785 kb on - strand, within LRK54_RS14535at 3226.790 kb on - strand, within LRK54_RS14535at 3226.872 kb on - strand, within LRK54_RS14535

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X
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3,224,565 + LRK54_RS14515 0.33 -1.2
3,224,774 - LRK54_RS14515 0.66 -1.2
3,224,784 + LRK54_RS14515 0.68 -0.1
3,225,014 + +0.7
3,225,014 + +0.7
3,225,014 + +1.5
3,225,014 + -0.3
3,225,014 + +1.5
3,225,014 + -0.7
3,225,014 + -1.1
3,225,014 + -0.4
3,225,014 + -0.1
3,225,015 - -0.6
3,225,015 - +0.2
3,225,015 - +0.2
3,225,015 - -0.0
3,225,015 - +0.0
3,225,015 - +1.0
3,225,015 - -0.1
3,225,015 - -0.7
3,225,015 - -1.5
3,225,015 - -0.2
3,225,015 - -0.2
3,225,015 - -0.3
3,225,015 - +1.2
3,225,015 - -0.2
3,225,015 - -3.2
3,225,015 - +0.2
3,225,015 - -0.3
3,225,083 - -1.0
3,225,196 + LRK54_RS14520 0.35 -4.0
3,225,196 + LRK54_RS14520 0.35 -0.0
3,225,196 + LRK54_RS14520 0.35 -0.3
3,225,196 + LRK54_RS14520 0.35 +1.1
3,225,197 - LRK54_RS14520 0.35 +0.4
3,225,197 - LRK54_RS14520 0.35 -0.9
3,225,197 - LRK54_RS14520 0.35 -0.7
3,225,197 - LRK54_RS14520 0.35 -0.1
3,225,209 + LRK54_RS14520 0.38 -2.1
3,225,209 + LRK54_RS14520 0.38 +1.2
3,225,209 + LRK54_RS14520 0.38 -0.0
3,225,209 + LRK54_RS14520 0.38 -1.2
3,225,209 + LRK54_RS14520 0.38 +1.0
3,225,209 + LRK54_RS14520 0.38 +0.4
3,225,209 + LRK54_RS14520 0.38 -0.4
3,225,209 + LRK54_RS14520 0.38 -0.8
3,225,209 + LRK54_RS14520 0.38 +0.4
3,225,209 + LRK54_RS14520 0.38 -0.3
3,225,209 + LRK54_RS14520 0.38 +0.5
3,225,210 - LRK54_RS14520 0.38 +0.0
3,225,210 - LRK54_RS14520 0.38 -0.7
3,225,210 - LRK54_RS14520 0.38 +1.1
3,225,210 - LRK54_RS14520 0.38 -0.1
3,225,210 - LRK54_RS14520 0.38 -2.8
3,225,210 - LRK54_RS14520 0.38 +0.1
3,225,210 - LRK54_RS14520 0.38 -0.5
3,225,210 - LRK54_RS14520 0.38 +0.2
3,225,210 - LRK54_RS14520 0.38 +0.1
3,225,210 - LRK54_RS14520 0.38 +0.1
3,225,326 + LRK54_RS14520 0.69 +0.4
3,225,326 + LRK54_RS14520 0.69 -0.8
3,225,326 + LRK54_RS14520 0.69 +0.1
3,225,326 + LRK54_RS14520 0.69 -0.2
3,225,326 + LRK54_RS14520 0.69 +0.7
3,225,326 + LRK54_RS14520 0.69 +0.0
3,225,326 + LRK54_RS14520 0.69 -1.1
3,225,327 - LRK54_RS14520 0.69 +3.8
3,225,327 - LRK54_RS14520 0.69 +0.0
3,225,327 - LRK54_RS14520 0.69 -0.2
3,225,327 - LRK54_RS14520 0.69 -0.1
3,225,434 - -0.8
3,225,440 + -0.3
3,225,440 + -1.7
3,225,440 + +1.0
3,225,440 + +0.4
3,225,440 + -1.5
3,225,440 + +0.1
3,225,440 + -0.8
3,225,440 + -0.3
3,225,440 + -1.6
3,225,440 + -0.6
3,225,440 + -1.1
3,225,441 - -0.1
3,225,441 - -0.8
3,225,441 - -0.9
3,225,441 - -0.6
3,225,441 - +0.1
3,225,441 - -2.1
3,225,441 - -0.9
3,225,732 + LRK54_RS14525 0.51 -0.5
3,225,732 + LRK54_RS14525 0.51 +0.5
3,225,732 + LRK54_RS14525 0.51 +0.6
3,225,732 + LRK54_RS14525 0.51 -0.5
3,225,732 + LRK54_RS14525 0.51 +0.1
3,225,732 + LRK54_RS14525 0.51 +0.2
3,225,733 - LRK54_RS14525 0.52 -0.6
3,225,733 - LRK54_RS14525 0.52 +0.2
3,225,733 - LRK54_RS14525 0.52 +0.4
3,225,733 - LRK54_RS14525 0.52 +0.8
3,225,733 - LRK54_RS14525 0.52 +1.3
3,225,733 - LRK54_RS14525 0.52 -1.6
3,225,903 + +0.3
3,225,984 + LRK54_RS14530 0.11 -0.3
3,225,984 + LRK54_RS14530 0.11 +0.5
3,225,985 - LRK54_RS14530 0.11 +0.6
3,225,985 - LRK54_RS14530 0.11 -1.6
3,225,985 - LRK54_RS14530 0.11 -0.3
3,225,985 - LRK54_RS14530 0.11 -0.3
3,225,985 - LRK54_RS14530 0.11 +0.3
3,225,985 - LRK54_RS14530 0.11 +0.4
3,225,985 - LRK54_RS14530 0.11 +0.8
3,225,985 - LRK54_RS14530 0.11 -0.9
3,225,985 - LRK54_RS14530 0.11 +2.3
3,225,985 - LRK54_RS14530 0.11 +0.4
3,225,985 - LRK54_RS14530 0.11 -1.2
3,226,242 + LRK54_RS14530 0.44 -0.1
3,226,242 + LRK54_RS14530 0.44 -0.1
3,226,242 + LRK54_RS14530 0.44 +0.1
3,226,243 - LRK54_RS14530 0.44 -1.6
3,226,243 - LRK54_RS14530 0.44 +0.1
3,226,243 - LRK54_RS14530 0.44 -0.9
3,226,243 - LRK54_RS14530 0.44 +0.3
3,226,435 - LRK54_RS14530 0.69 -0.6
3,226,449 + LRK54_RS14530 0.71 -0.8
3,226,449 + LRK54_RS14530 0.71 -0.6
3,226,450 - LRK54_RS14530 0.71 -0.2
3,226,450 - LRK54_RS14530 0.71 +0.3
3,226,450 - LRK54_RS14530 0.71 -0.4
3,226,450 - LRK54_RS14530 0.71 +0.8
3,226,450 - LRK54_RS14530 0.71 -0.8
3,226,450 - LRK54_RS14530 0.71 +0.3
3,226,450 - LRK54_RS14530 0.71 -0.5
3,226,450 - LRK54_RS14530 0.71 +1.4
3,226,450 - LRK54_RS14530 0.71 +0.6
3,226,569 + LRK54_RS14530 0.87 +0.5
3,226,784 + LRK54_RS14535 0.44 -2.0
3,226,784 + LRK54_RS14535 0.44 -2.4
3,226,784 + LRK54_RS14535 0.44 -0.9
3,226,784 + LRK54_RS14535 0.44 -0.6
3,226,784 + LRK54_RS14535 0.44 -1.9
3,226,784 + LRK54_RS14535 0.44 -0.3
3,226,784 + LRK54_RS14535 0.44 -0.1
3,226,784 + LRK54_RS14535 0.44 -0.6
3,226,784 + LRK54_RS14535 0.44 -1.6
3,226,785 - LRK54_RS14535 0.44 -0.1
3,226,785 - LRK54_RS14535 0.44 +0.7
3,226,785 - LRK54_RS14535 0.44 -0.3
3,226,785 - LRK54_RS14535 0.44 -0.2
3,226,785 - LRK54_RS14535 0.44 -0.5
3,226,785 - LRK54_RS14535 0.44 +0.5
3,226,785 - LRK54_RS14535 0.44 -0.9
3,226,785 - LRK54_RS14535 0.44 -0.3
3,226,790 - LRK54_RS14535 0.47 -0.3
3,226,872 - LRK54_RS14535 0.89 -0.6

Or see this region's nucleotide sequence