Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14495

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,219,163	+				-0.3
3,219,219	+				-0.9
3,219,219	+				-0.4
3,219,219	+				+0.4
3,219,219	+				+0.7
3,219,219	+				+0.2
3,219,219	+				+0.1
3,219,219	+				+0.5
3,219,220	-				+0.3
3,219,220	-				-0.1
3,219,357	-		LRK54_RS14490	0.18	-0.3
3,219,420	+		LRK54_RS14490	0.24	-0.5
3,219,421	-		LRK54_RS14490	0.25	+0.0
3,219,421	-		LRK54_RS14490	0.25	-0.3
3,219,444	+		LRK54_RS14490	0.27	+1.1
3,219,445	-		LRK54_RS14490	0.27	-1.2
3,219,445	-		LRK54_RS14490	0.27	-0.1
3,219,445	-		LRK54_RS14490	0.27	+2.0
3,219,858	+		LRK54_RS14490	0.71	-0.1
3,220,172	+				+0.5
3,220,172	+				+0.4
3,220,172	+				+0.6
3,220,172	+				-1.4
3,220,172	+				+0.2
3,220,172	+				+0.8
3,220,172	+				+0.3
3,220,172	+				+0.1
3,220,172	+				+1.2
3,220,172	+				+0.0
3,220,172	+				+0.1
3,220,172	+				+1.5
3,220,173	-				+0.0
3,220,173	-				+0.5
3,220,173	-				+0.3
3,220,173	-				+0.3
3,220,173	-				-0.1
3,220,173	-				+0.2
3,220,173	-				-0.5
3,220,173	-				+0.3
3,220,173	-				+0.1
3,220,173	-				-0.2
3,220,193	+				-0.3
3,220,193	+				-1.5
3,220,193	+				-0.8
3,220,193	+				+2.7
3,220,193	+				+1.7
3,220,193	+				+0.2
3,220,193	+				+0.4
3,220,193	+				+0.3
3,220,193	+				+0.9
3,220,193	+				-0.1
3,220,193	+				-0.4
3,220,193	+				+0.6
3,220,193	+				+0.3
3,220,193	+				+1.2
3,220,193	+				-1.6
3,220,193	+				+0.2
3,220,193	+				+0.2
3,220,194	-				+0.4
3,220,194	-				+0.2
3,220,194	-				+0.4
3,220,194	-				+1.2
3,220,194	-				-0.1
3,220,194	-				+0.3
3,220,194	-				+0.5
3,220,194	-				-0.3
3,220,194	-				+0.1
3,220,194	-				-1.5
3,220,194	-				-2.1
3,220,194	-				+1.7
3,220,241	+		LRK54_RS14495	0.15	-0.6
3,220,241	+		LRK54_RS14495	0.15	+0.7
3,220,241	+		LRK54_RS14495	0.15	+0.9
3,220,241	+		LRK54_RS14495	0.15	-0.0
3,220,241	+		LRK54_RS14495	0.15	+0.2
3,220,242	-		LRK54_RS14495	0.15	+0.0
3,220,242	-		LRK54_RS14495	0.15	+0.7
3,220,242	-		LRK54_RS14495	0.15	+0.8
3,220,242	-		LRK54_RS14495	0.15	-0.1
3,220,242	-		LRK54_RS14495	0.15	+0.9
3,220,242	-		LRK54_RS14495	0.15	+0.9
3,220,242	-		LRK54_RS14495	0.15	+0.7
3,220,242	-		LRK54_RS14495	0.15	-0.1
3,220,242	-		LRK54_RS14495	0.15	+0.3
3,220,242	-		LRK54_RS14495	0.15	-0.5
3,220,256	+		LRK54_RS14495	0.17	+1.6
3,220,310	+		LRK54_RS14495	0.24	+0.2
3,220,310	+		LRK54_RS14495	0.24	+1.2
3,220,310	+		LRK54_RS14495	0.24	-0.2
3,220,310	+		LRK54_RS14495	0.24	+0.3
3,220,310	+		LRK54_RS14495	0.24	+0.8
3,220,310	+		LRK54_RS14495	0.24	+1.3
3,220,310	+		LRK54_RS14495	0.24	-0.6
3,220,310	+		LRK54_RS14495	0.24	+2.2
3,220,310	+		LRK54_RS14495	0.24	+0.9
3,220,310	+		LRK54_RS14495	0.24	-0.2
3,220,310	+		LRK54_RS14495	0.24	-0.1
3,220,310	+		LRK54_RS14495	0.24	+0.3
3,220,310	+		LRK54_RS14495	0.24	-0.8
3,220,310	+		LRK54_RS14495	0.24	+0.1
3,220,311	-		LRK54_RS14495	0.25	+1.2
3,220,311	-		LRK54_RS14495	0.25	+0.5
3,220,311	-		LRK54_RS14495	0.25	+0.4
3,220,311	-		LRK54_RS14495	0.25	+0.9
3,220,311	-		LRK54_RS14495	0.25	+0.1
3,220,311	-		LRK54_RS14495	0.25	+1.1
3,220,311	-		LRK54_RS14495	0.25	+0.2
3,220,311	-		LRK54_RS14495	0.25	+0.3
3,220,311	-		LRK54_RS14495	0.25	-0.3
3,220,311	-		LRK54_RS14495	0.25	+0.3
3,220,311	-		LRK54_RS14495	0.25	+0.1
3,220,311	-		LRK54_RS14495	0.25	-0.1
3,220,311	-		LRK54_RS14495	0.25	+0.3
3,220,311	-		LRK54_RS14495	0.25	+0.5
3,220,311	-		LRK54_RS14495	0.25	+0.1
3,220,313	-		LRK54_RS14495	0.25	+0.4
3,220,496	+		LRK54_RS14495	0.50	+0.7
3,220,496	+		LRK54_RS14495	0.50	+0.3
3,220,496	+		LRK54_RS14495	0.50	+0.7
3,220,496	+		LRK54_RS14495	0.50	-0.3
3,220,496	+		LRK54_RS14495	0.50	+0.2
3,220,496	+		LRK54_RS14495	0.50	-0.2
3,220,496	+		LRK54_RS14495	0.50	+0.5
3,220,496	+		LRK54_RS14495	0.50	+0.4
3,220,496	+		LRK54_RS14495	0.50	+0.4
3,220,496	+		LRK54_RS14495	0.50	-0.4
3,220,496	+		LRK54_RS14495	0.50	+0.4
3,220,497	-		LRK54_RS14495	0.50	+0.2
3,220,497	-		LRK54_RS14495	0.50	-0.1
3,220,497	-		LRK54_RS14495	0.50	+1.9
3,220,497	-		LRK54_RS14495	0.50	+0.1
3,220,497	-		LRK54_RS14495	0.50	+0.1
3,220,497	-		LRK54_RS14495	0.50	-0.2
3,220,497	-		LRK54_RS14495	0.50	+0.1
3,220,497	-		LRK54_RS14495	0.50	+0.6
3,220,497	-		LRK54_RS14495	0.50	+0.5
3,220,497	-		LRK54_RS14495	0.50	+0.2
3,220,497	-		LRK54_RS14495	0.50	+0.9
3,220,497	-		LRK54_RS14495	0.50	-1.0
3,220,535	+		LRK54_RS14495	0.55	+2.8
3,220,535	+		LRK54_RS14495	0.55	+0.5
3,220,535	+		LRK54_RS14495	0.55	+0.7
3,220,535	+		LRK54_RS14495	0.55	-1.5
3,220,535	+		LRK54_RS14495	0.55	+0.5
3,220,536	-		LRK54_RS14495	0.55	+0.2
3,220,536	-		LRK54_RS14495	0.55	+0.4
3,220,536	-		LRK54_RS14495	0.55	+0.7
3,220,793	+				+0.9
3,220,793	+				-0.2
3,220,793	+				+0.3
3,220,793	+				+0.7
3,220,793	+				-0.0
3,220,793	+				+0.5
3,220,793	+				+0.2
3,220,793	+				-0.0
3,220,793	+				+1.4
3,220,793	+				-0.2
3,220,793	+				+0.8
3,220,793	+				+0.9
3,220,793	+				-0.2
3,220,793	+				+0.5
3,220,794	-				+0.9
3,220,794	-				-0.1
3,220,794	-				-0.4
3,220,794	-				-0.1
3,220,794	-				-0.2
3,220,794	-				+0.3
3,220,794	-				+1.0
3,220,794	-				-0.3
3,220,794	-				+0.2
3,220,794	-				-1.1
3,220,936	-				+0.8
3,220,936	-				-1.8
3,220,936	-				+0.4
3,220,936	-				+0.2
3,220,936	-				-0.2
3,220,936	-				-0.3
3,220,948	+				+0.2
3,220,948	+				-0.1
3,220,948	+				+0.7
3,220,949	-				-1.8
3,220,949	-				+0.5
3,221,037	+				+0.8
3,221,037	+				+0.8
3,221,037	+				-0.0
3,221,037	+				-0.2
3,221,037	+				+0.7
3,221,037	+				+0.3
3,221,037	+				+0.1
3,221,037	+				-0.3
3,221,037	+				+0.2
3,221,037	+				+1.8
3,221,037	+				+0.8
3,221,037	+				+0.4
3,221,038	-				+0.4
3,221,038	-				+0.7
3,221,038	-				+0.1
3,221,038	-				-0.2
3,221,038	-				-0.3
3,221,038	-				-0.3
3,221,038	-				-0.8
3,221,038	-				-0.0
3,221,038	-				+0.4
3,221,038	-				-0.8
3,221,072	+		LRK54_RS14500	0.11	+0.1
3,221,073	-		LRK54_RS14500	0.11	+0.6
3,221,103	+		LRK54_RS14500	0.12	+0.3
3,221,103	+		LRK54_RS14500	0.12	-0.1
3,221,103	+		LRK54_RS14500	0.12	+0.8
3,221,103	+		LRK54_RS14500	0.12	-0.3
3,221,103	+		LRK54_RS14500	0.12	+0.4
3,221,103	+		LRK54_RS14500	0.12	+0.7
3,221,103	+		LRK54_RS14500	0.12	+0.5
3,221,103	+		LRK54_RS14500	0.12	+0.8
3,221,103	+		LRK54_RS14500	0.12	+0.3
3,221,103	+		LRK54_RS14500	0.12	+1.2
3,221,103	+		LRK54_RS14500	0.12	+0.5
3,221,103	+		LRK54_RS14500	0.12	+1.0
3,221,103	+		LRK54_RS14500	0.12	+0.5
3,221,103	+		LRK54_RS14500	0.12	-0.9
3,221,103	+		LRK54_RS14500	0.12	+0.9
3,221,104	-		LRK54_RS14500	0.12	+0.7
3,221,104	-		LRK54_RS14500	0.12	+1.0
3,221,104	-		LRK54_RS14500	0.12	-0.6
3,221,104	-		LRK54_RS14500	0.12	+0.5
3,221,104	-		LRK54_RS14500	0.12	-0.5
3,221,104	-		LRK54_RS14500	0.12	-0.9
3,221,104	-		LRK54_RS14500	0.12	+0.3
3,221,104	-		LRK54_RS14500	0.12	-1.1
3,221,104	-		LRK54_RS14500	0.12	+0.2
3,221,104	-		LRK54_RS14500	0.12	+0.6
3,221,104	-		LRK54_RS14500	0.12	+2.2
3,221,104	-		LRK54_RS14500	0.12	+0.4
3,221,104	-		LRK54_RS14500	0.12	+0.2
3,221,104	-		LRK54_RS14500	0.12	+1.0
3,221,104	-		LRK54_RS14500	0.12	+0.4
3,221,148	+		LRK54_RS14500	0.15	-0.3
3,221,148	+		LRK54_RS14500	0.15	+0.4
3,221,148	+		LRK54_RS14500	0.15	+2.2
3,221,148	+		LRK54_RS14500	0.15	+0.0
3,221,148	+		LRK54_RS14500	0.15	+0.7
3,221,148	+		LRK54_RS14500	0.15	+1.0
3,221,148	+		LRK54_RS14500	0.15	+0.6
3,221,149	-		LRK54_RS14500	0.15	+0.2
3,221,149	-		LRK54_RS14500	0.15	-0.2
3,221,149	-		LRK54_RS14500	0.15	+0.3
3,221,149	-		LRK54_RS14500	0.15	-0.4
3,221,236	-		LRK54_RS14500	0.19	-0.1
3,221,433	+		LRK54_RS14500	0.29	-2.1
3,221,433	+		LRK54_RS14500	0.29	+0.1
3,221,433	+		LRK54_RS14500	0.29	+0.2
3,221,433	+		LRK54_RS14500	0.29	+1.2
3,221,433	+		LRK54_RS14500	0.29	+0.6
3,221,433	+		LRK54_RS14500	0.29	+0.2
3,221,434	-		LRK54_RS14500	0.29	+0.0
3,221,434	-		LRK54_RS14500	0.29	-0.2
3,221,434	-		LRK54_RS14500	0.29	+0.5
3,221,434	-		LRK54_RS14500	0.29	+3.8
3,221,434	-		LRK54_RS14500	0.29	+0.1
3,221,434	-		LRK54_RS14500	0.29	+0.7
3,221,454	+		LRK54_RS14500	0.31	+0.1
3,221,454	+		LRK54_RS14500	0.31	-0.0
3,221,454	+		LRK54_RS14500	0.31	+0.4
3,221,454	+		LRK54_RS14500	0.31	+2.2
3,221,454	+		LRK54_RS14500	0.31	+0.5
3,221,455	-		LRK54_RS14500	0.31	+1.2
3,221,455	-		LRK54_RS14500	0.31	+0.5
3,221,455	-		LRK54_RS14500	0.31	+0.0
3,221,455	-		LRK54_RS14500	0.31	-0.2
3,221,673	+		LRK54_RS14500	0.42	-0.3
3,221,673	+		LRK54_RS14500	0.42	-0.1
3,221,673	+		LRK54_RS14500	0.42	+1.8
3,221,673	+		LRK54_RS14500	0.42	-0.9
3,221,673	+		LRK54_RS14500	0.42	-1.2
3,221,674	-		LRK54_RS14500	0.42	+0.3
3,221,674	-		LRK54_RS14500	0.42	-0.8
3,221,674	-		LRK54_RS14500	0.42	-0.3
3,221,674	-		LRK54_RS14500	0.42	+0.8
3,221,674	-		LRK54_RS14500	0.42	-0.6
3,221,674	-		LRK54_RS14500	0.42	-0.4
3,221,674	-		LRK54_RS14500	0.42	-1.0
3,221,688	+		LRK54_RS14500	0.43	+0.5
3,221,688	+		LRK54_RS14500	0.43	-1.9
3,221,688	+		LRK54_RS14500	0.43	+0.4
3,221,688	+		LRK54_RS14500	0.43	-0.3
3,221,688	+		LRK54_RS14500	0.43	+0.2
3,221,688	+		LRK54_RS14500	0.43	+0.5
3,221,688	+		LRK54_RS14500	0.43	+0.9
3,221,688	+		LRK54_RS14500	0.43	+0.9
3,221,688	+		LRK54_RS14500	0.43	-0.4
3,221,688	+		LRK54_RS14500	0.43	+1.4
3,221,688	+		LRK54_RS14500	0.43	-0.2
3,221,689	-		LRK54_RS14500	0.43	+1.6
3,221,689	-		LRK54_RS14500	0.43	+0.3
3,221,689	-		LRK54_RS14500	0.43	-1.9
3,221,689	-		LRK54_RS14500	0.43	-0.4
3,221,689	-		LRK54_RS14500	0.43	+0.2
3,221,689	-		LRK54_RS14500	0.43	+1.0
3,221,689	-		LRK54_RS14500	0.43	+0.5
3,221,689	-		LRK54_RS14500	0.43	-0.2
3,221,689	-		LRK54_RS14500	0.43	+0.2
3,221,689	-		LRK54_RS14500	0.43	-1.2
3,221,689	-		LRK54_RS14500	0.43	+0.2
3,221,689	-		LRK54_RS14500	0.43	-1.1
3,221,689	-		LRK54_RS14500	0.43	-1.6
3,221,689	-		LRK54_RS14500	0.43	-0.5
3,221,689	-		LRK54_RS14500	0.43	-1.2
3,221,829	+		LRK54_RS14500	0.50	+0.5
3,221,829	+		LRK54_RS14500	0.50	-1.2
3,221,829	+		LRK54_RS14500	0.50	+0.0
3,221,829	+		LRK54_RS14500	0.50	+0.4
3,221,829	+		LRK54_RS14500	0.50	-0.1
3,221,829	+		LRK54_RS14500	0.50	+0.5
3,221,829	+		LRK54_RS14500	0.50	-2.1
3,221,830	-		LRK54_RS14500	0.50	+0.5
3,221,830	-		LRK54_RS14500	0.50	-0.4
3,221,830	-		LRK54_RS14500	0.50	-0.1
3,221,830	-		LRK54_RS14500	0.50	-0.2
3,221,830	-		LRK54_RS14500	0.50	+1.0
3,221,830	-		LRK54_RS14500	0.50	+0.4
3,221,830	-		LRK54_RS14500	0.50	+0.4
3,221,830	-		LRK54_RS14500	0.50	+1.1
3,221,830	-		LRK54_RS14500	0.50	-0.7
3,221,830	-		LRK54_RS14500	0.50	+0.4
3,221,830	-		LRK54_RS14500	0.50	-1.4
3,221,830	-		LRK54_RS14500	0.50	+0.8
3,221,830	-		LRK54_RS14500	0.50	-0.5
3,221,830	-		LRK54_RS14500	0.50	+0.2
3,221,830	-		LRK54_RS14500	0.50	+0.3
3,221,830	-		LRK54_RS14500	0.50	-0.1
3,221,830	-		LRK54_RS14500	0.50	-0.0