Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14000

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,123,437	+		LRK54_RS13995	0.39	-0.1
3,123,437	+		LRK54_RS13995	0.39	-1.3
3,123,437	+		LRK54_RS13995	0.39	-0.4
3,123,437	+		LRK54_RS13995	0.39	+1.6
3,123,437	+		LRK54_RS13995	0.39	+1.3
3,123,438	-		LRK54_RS13995	0.39	+0.6
3,123,438	-		LRK54_RS13995	0.39	+0.7
3,123,438	-		LRK54_RS13995	0.39	+0.3
3,123,438	-		LRK54_RS13995	0.39	-0.7
3,123,438	-		LRK54_RS13995	0.39	-0.2
3,123,438	-		LRK54_RS13995	0.39	+0.9
3,123,438	-		LRK54_RS13995	0.39	+0.2
3,123,438	-		LRK54_RS13995	0.39	-1.3
3,123,519	-		LRK54_RS13995	0.44	+0.6
3,123,519	-		LRK54_RS13995	0.44	-0.7
3,123,530	+		LRK54_RS13995	0.45	+0.6
3,123,530	+		LRK54_RS13995	0.45	-0.1
3,123,530	+		LRK54_RS13995	0.45	+1.2
3,123,530	+		LRK54_RS13995	0.45	-1.1
3,123,530	+		LRK54_RS13995	0.45	+0.3
3,123,530	+		LRK54_RS13995	0.45	+1.7
3,123,530	+		LRK54_RS13995	0.45	+0.5
3,123,530	+		LRK54_RS13995	0.45	+0.1
3,123,530	+		LRK54_RS13995	0.45	-1.0
3,123,530	+		LRK54_RS13995	0.45	-0.6
3,123,530	+		LRK54_RS13995	0.45	-1.6
3,123,530	+		LRK54_RS13995	0.45	+2.4
3,123,531	-		LRK54_RS13995	0.45	-0.6
3,123,531	-		LRK54_RS13995	0.45	-0.3
3,123,531	-		LRK54_RS13995	0.45	-1.9
3,123,531	-		LRK54_RS13995	0.45	+0.5
3,123,531	-		LRK54_RS13995	0.45	+0.3
3,123,531	-		LRK54_RS13995	0.45	-0.2
3,123,531	-		LRK54_RS13995	0.45	-1.8
3,123,533	+		LRK54_RS13995	0.45	-0.0
3,123,533	+		LRK54_RS13995	0.45	+1.2
3,123,533	+		LRK54_RS13995	0.45	-0.1
3,123,533	+		LRK54_RS13995	0.45	-0.6
3,123,533	+		LRK54_RS13995	0.45	-0.8
3,123,533	+		LRK54_RS13995	0.45	-0.0
3,123,533	+		LRK54_RS13995	0.45	-0.7
3,123,533	+		LRK54_RS13995	0.45	-0.1
3,123,534	-		LRK54_RS13995	0.45	+0.4
3,123,534	-		LRK54_RS13995	0.45	+0.6
3,123,534	-		LRK54_RS13995	0.45	-0.4
3,123,534	-		LRK54_RS13995	0.45	-0.3
3,123,534	-		LRK54_RS13995	0.45	+2.2
3,123,534	-		LRK54_RS13995	0.45	+0.8
3,123,534	-		LRK54_RS13995	0.45	+0.6
3,123,534	-		LRK54_RS13995	0.45	+0.0
3,123,576	-		LRK54_RS13995	0.48	-0.5
3,123,576	-		LRK54_RS13995	0.48	-0.5
3,123,656	+		LRK54_RS13995	0.53	-1.1
3,123,656	+		LRK54_RS13995	0.53	+0.9
3,123,657	-		LRK54_RS13995	0.53	+0.4
3,123,657	-		LRK54_RS13995	0.53	-0.9
3,123,657	-		LRK54_RS13995	0.53	+0.6
3,123,657	-		LRK54_RS13995	0.53	-0.4
3,123,657	-		LRK54_RS13995	0.53	-0.7
3,123,657	-		LRK54_RS13995	0.53	-0.4
3,123,657	-		LRK54_RS13995	0.53	+0.5
3,123,657	-		LRK54_RS13995	0.53	-2.6
3,123,657	-		LRK54_RS13995	0.53	-0.8
3,123,710	+		LRK54_RS13995	0.57	-0.3
3,123,710	+		LRK54_RS13995	0.57	-1.0
3,123,710	+		LRK54_RS13995	0.57	-0.3
3,123,710	+		LRK54_RS13995	0.57	-1.3
3,123,710	+		LRK54_RS13995	0.57	+0.7
3,123,711	-		LRK54_RS13995	0.57	-0.1
3,123,711	-		LRK54_RS13995	0.57	+1.0
3,123,824	+		LRK54_RS13995	0.64	+0.2
3,123,824	+		LRK54_RS13995	0.64	+0.1
3,123,824	+		LRK54_RS13995	0.64	-1.5
3,123,824	+		LRK54_RS13995	0.64	+1.4
3,123,896	+		LRK54_RS13995	0.69	-0.4
3,123,896	+		LRK54_RS13995	0.69	-1.3
3,123,896	+		LRK54_RS13995	0.69	-0.9
3,123,896	+		LRK54_RS13995	0.69	+0.6
3,123,897	-		LRK54_RS13995	0.69	-0.9
3,123,897	-		LRK54_RS13995	0.69	+0.6
3,123,897	-		LRK54_RS13995	0.69	-0.4
3,123,897	-		LRK54_RS13995	0.69	+0.6
3,123,897	-		LRK54_RS13995	0.69	-0.1
3,123,897	-		LRK54_RS13995	0.69	+0.8
3,123,897	-		LRK54_RS13995	0.69	-0.1
3,123,897	-		LRK54_RS13995	0.69	+0.3
3,123,897	-		LRK54_RS13995	0.69	-0.6
3,123,897	-		LRK54_RS13995	0.69	+0.8
3,123,998	+		LRK54_RS13995	0.75	+0.1
3,123,999	-		LRK54_RS13995	0.75	-0.3
3,124,163	+		LRK54_RS13995	0.86	-0.7
3,124,163	+		LRK54_RS13995	0.86	+0.9
3,124,163	+		LRK54_RS13995	0.86	-2.4
3,124,163	+		LRK54_RS13995	0.86	-1.2
3,124,163	+		LRK54_RS13995	0.86	-1.6
3,124,163	+		LRK54_RS13995	0.86	-2.2
3,124,163	+		LRK54_RS13995	0.86	-0.3
3,124,163	+		LRK54_RS13995	0.86	+0.7
3,124,163	+		LRK54_RS13995	0.86	-0.5
3,124,163	+		LRK54_RS13995	0.86	-0.2
3,124,163	+		LRK54_RS13995	0.86	-0.6
3,124,163	+		LRK54_RS13995	0.86	-0.0
3,124,163	+		LRK54_RS13995	0.86	+0.3
3,124,163	+		LRK54_RS13995	0.86	+0.4
3,124,163	+		LRK54_RS13995	0.86	+0.2
3,124,163	+		LRK54_RS13995	0.86	-0.1
3,124,163	+		LRK54_RS13995	0.86	-1.2
3,124,163	+		LRK54_RS13995	0.86	+0.7
3,124,163	+		LRK54_RS13995	0.86	-0.4
3,124,163	+		LRK54_RS13995	0.86	-2.0
3,124,163	+		LRK54_RS13995	0.86	+0.9
3,124,163	+		LRK54_RS13995	0.86	+1.4
3,124,163	+		LRK54_RS13995	0.86	+3.8
3,124,163	+		LRK54_RS13995	0.86	-0.7
3,124,163	+		LRK54_RS13995	0.86	+0.0
3,124,163	+		LRK54_RS13995	0.86	-0.8
3,124,163	+		LRK54_RS13995	0.86	-0.9
3,124,164	-		LRK54_RS13995	0.86	-0.1
3,124,164	-		LRK54_RS13995	0.86	-0.1
3,124,164	-		LRK54_RS13995	0.86	-0.1
3,124,164	-		LRK54_RS13995	0.86	-1.0
3,124,164	-		LRK54_RS13995	0.86	+0.3
3,124,164	-		LRK54_RS13995	0.86	-1.2
3,124,164	-		LRK54_RS13995	0.86	-0.6
3,124,164	-		LRK54_RS13995	0.86	-1.0
3,124,164	-		LRK54_RS13995	0.86	-0.2
3,124,164	-		LRK54_RS13995	0.86	-1.4
3,124,164	-		LRK54_RS13995	0.86	-0.8
3,124,164	-		LRK54_RS13995	0.86	+0.3
3,124,164	-		LRK54_RS13995	0.86	-0.2
3,124,164	-		LRK54_RS13995	0.86	+0.4
3,124,164	-		LRK54_RS13995	0.86	+0.1
3,124,164	-		LRK54_RS13995	0.86	+1.9
3,124,164	-		LRK54_RS13995	0.86	+1.4
3,124,164	-		LRK54_RS13995	0.86	-0.6
3,124,164	-		LRK54_RS13995	0.86	+0.4
3,124,164	-		LRK54_RS13995	0.86	+0.0
3,124,164	-		LRK54_RS13995	0.86	+1.6
3,124,169	+		LRK54_RS13995	0.86	+0.3
3,124,187	+		LRK54_RS13995	0.87	+1.3
3,124,187	+		LRK54_RS13995	0.87	-0.1
3,124,187	+		LRK54_RS13995	0.87	-0.5
3,124,187	+		LRK54_RS13995	0.87	+1.8
3,124,188	-		LRK54_RS13995	0.87	+1.2
3,124,188	-		LRK54_RS13995	0.87	+1.2
3,124,188	-		LRK54_RS13995	0.87	-1.0
3,124,188	-		LRK54_RS13995	0.87	+0.6
3,124,188	-		LRK54_RS13995	0.87	+1.2
3,124,188	-		LRK54_RS13995	0.87	+2.4
3,124,188	-		LRK54_RS13995	0.87	+0.6
3,124,188	-		LRK54_RS13995	0.87	-0.6
3,124,188	-		LRK54_RS13995	0.87	+0.1
3,124,188	-		LRK54_RS13995	0.87	-0.6
3,124,188	-		LRK54_RS13995	0.87	-0.3
3,124,188	-		LRK54_RS13995	0.87	-0.6
3,124,226	+		LRK54_RS13995	0.90	+0.5
3,124,227	-				-0.7
3,124,666	+		LRK54_RS14000	0.42	-1.6
3,124,667	-		LRK54_RS14000	0.42	-0.4
3,124,667	-		LRK54_RS14000	0.42	-0.0
3,124,667	-		LRK54_RS14000	0.42	-0.1
3,124,667	-		LRK54_RS14000	0.42	-1.9
3,124,667	-		LRK54_RS14000	0.42	-0.5
3,124,711	+		LRK54_RS14000	0.49	+1.8
3,124,788	+		LRK54_RS14000	0.60	+0.9
3,124,788	+		LRK54_RS14000	0.60	+0.4
3,124,788	+		LRK54_RS14000	0.60	+0.1
3,124,789	-		LRK54_RS14000	0.60	+1.2
3,124,789	-		LRK54_RS14000	0.60	+0.3
3,124,789	-		LRK54_RS14000	0.60	+1.5
3,125,064	+				+0.3
3,125,064	+				+1.0
3,125,064	+				+0.1
3,125,064	+				-0.3
3,125,064	+				-0.1
3,125,064	+				-0.3
3,125,064	+				+0.8
3,125,064	+				-1.1
3,125,064	+				-1.0
3,125,064	+				+1.6
3,125,064	+				-0.2
3,125,064	+				+0.9
3,125,064	+				+0.3
3,125,064	+				-0.5
3,125,065	-				-0.8
3,125,065	-				+0.1
3,125,065	-				-0.4
3,125,065	-				+1.2
3,125,065	-				+0.0
3,125,065	-				-1.5
3,125,065	-				-0.7
3,125,065	-				-0.6
3,125,065	-				+0.6
3,125,065	-				-0.3
3,125,065	-				-0.6
3,125,065	-				-0.5
3,125,065	-				-1.3
3,125,065	-				-0.0
3,125,065	-				-0.9
3,125,065	-				-0.1
3,125,065	-				-0.6
3,125,091	+				-0.6
3,125,091	+				-1.9
3,125,091	+				-1.7
3,125,091	+				+0.1
3,125,091	+				-0.1
3,125,092	-				-2.2
3,125,092	-				+0.1
3,125,092	-				+0.8
3,125,097	+				+0.1
3,125,097	+				-0.4
3,125,097	+				+1.0
3,125,097	+				+0.6
3,125,097	+				-1.3
3,125,097	+				+0.0
3,125,097	+				+0.9
3,125,098	-				+1.0
3,125,098	-				+1.0
3,125,098	-				+0.1
3,125,098	-				-1.7
3,125,098	-				-0.7
3,125,098	-				+0.3
3,125,098	-				-0.0
3,125,098	-				-0.0
3,125,098	-				+1.8
3,125,098	-				+0.3
3,125,098	-				-0.3
3,125,098	-				-0.2
3,125,098	-				+0.4
3,125,154	+		LRK54_RS14005	0.14	+0.4
3,125,154	+		LRK54_RS14005	0.14	-0.8
3,125,154	+		LRK54_RS14005	0.14	-0.5
3,125,154	+		LRK54_RS14005	0.14	-0.0
3,125,154	+		LRK54_RS14005	0.14	+1.0
3,125,154	+		LRK54_RS14005	0.14	-1.1
3,125,154	+		LRK54_RS14005	0.14	-0.4
3,125,154	+		LRK54_RS14005	0.14	+1.2
3,125,154	+		LRK54_RS14005	0.14	-0.4
3,125,154	+		LRK54_RS14005	0.14	+0.3
3,125,154	+		LRK54_RS14005	0.14	-0.8
3,125,154	+		LRK54_RS14005	0.14	+0.3
3,125,154	+		LRK54_RS14005	0.14	-0.8
3,125,154	+		LRK54_RS14005	0.14	+1.3
3,125,154	+		LRK54_RS14005	0.14	+1.2
3,125,154	+		LRK54_RS14005	0.14	+0.9
3,125,154	+		LRK54_RS14005	0.14	-0.4
3,125,154	+		LRK54_RS14005	0.14	-0.4
3,125,154	+		LRK54_RS14005	0.14	-0.8
3,125,154	+		LRK54_RS14005	0.14	+0.1
3,125,155	-		LRK54_RS14005	0.14	+0.3
3,125,155	-		LRK54_RS14005	0.14	+0.6
3,125,155	-		LRK54_RS14005	0.14	-1.0
3,125,155	-		LRK54_RS14005	0.14	+0.8
3,125,155	-		LRK54_RS14005	0.14	-0.1
3,125,155	-		LRK54_RS14005	0.14	-0.3
3,125,155	-		LRK54_RS14005	0.14	-0.1
3,125,155	-		LRK54_RS14005	0.14	-0.8
3,125,155	-		LRK54_RS14005	0.14	+0.1
3,125,155	-		LRK54_RS14005	0.14	-0.4
3,125,155	-		LRK54_RS14005	0.14	+2.2
3,125,155	-		LRK54_RS14005	0.14	-1.0
3,125,155	-		LRK54_RS14005	0.14	+0.2
3,125,155	-		LRK54_RS14005	0.14	-0.3
3,125,155	-		LRK54_RS14005	0.14	-0.9
3,125,155	-		LRK54_RS14005	0.14	+0.1
3,125,155	-		LRK54_RS14005	0.14	-0.2
3,125,155	-		LRK54_RS14005	0.14	+0.6
3,125,155	-		LRK54_RS14005	0.14	-1.0
3,125,155	-		LRK54_RS14005	0.14	+1.3
3,125,155	-		LRK54_RS14005	0.14	+0.3
3,125,155	-		LRK54_RS14005	0.14	+1.2
3,125,155	-		LRK54_RS14005	0.14	+0.7
3,125,155	-		LRK54_RS14005	0.14	+1.8
3,125,155	-		LRK54_RS14005	0.14	-0.5
3,125,155	-		LRK54_RS14005	0.14	-0.2
3,125,286	+		LRK54_RS14005	0.32	+0.1
3,125,286	+		LRK54_RS14005	0.32	-0.3
3,125,286	+		LRK54_RS14005	0.32	-0.2
3,125,286	+		LRK54_RS14005	0.32	-0.2
3,125,287	-		LRK54_RS14005	0.32	-0.6
3,125,287	-		LRK54_RS14005	0.32	+0.4
3,125,287	-		LRK54_RS14005	0.32	+0.8
3,125,287	-		LRK54_RS14005	0.32	+0.3
3,125,371	+		LRK54_RS14005	0.44	-0.2
3,125,371	+		LRK54_RS14005	0.44	-0.4
3,125,371	+		LRK54_RS14005	0.44	-0.5
3,125,372	-		LRK54_RS14005	0.45	-0.3
3,125,372	-		LRK54_RS14005	0.45	+0.1
3,125,372	-		LRK54_RS14005	0.45	-1.1
3,125,372	-		LRK54_RS14005	0.45	+0.2
3,125,372	-		LRK54_RS14005	0.45	+0.1
3,125,372	-		LRK54_RS14005	0.45	-0.3
3,125,372	-		LRK54_RS14005	0.45	-1.5
3,125,481	+		LRK54_RS14005	0.60	-1.6
3,125,481	+		LRK54_RS14005	0.60	-0.5
3,125,482	-		LRK54_RS14005	0.60	-1.5
3,125,482	-		LRK54_RS14005	0.60	+0.1
3,125,482	-		LRK54_RS14005	0.60	-1.0
3,125,482	-		LRK54_RS14005	0.60	-0.5
3,125,482	-		LRK54_RS14005	0.60	+1.0
3,125,482	-		LRK54_RS14005	0.60	-2.2
3,125,482	-		LRK54_RS14005	0.60	-0.0
3,125,482	-		LRK54_RS14005	0.60	+0.5
3,125,583	+		LRK54_RS14005	0.74	+1.5
3,125,583	+		LRK54_RS14005	0.74	+1.0
3,125,583	+		LRK54_RS14005	0.74	-0.5
3,125,583	+		LRK54_RS14005	0.74	+1.1
3,125,583	+		LRK54_RS14005	0.74	-0.9
3,125,584	-		LRK54_RS14005	0.75	+1.1
3,125,584	-		LRK54_RS14005	0.75	-1.4
3,125,584	-		LRK54_RS14005	0.75	+0.8
3,125,584	-		LRK54_RS14005	0.75	+0.0
3,125,607	+		LRK54_RS14005	0.78	-0.8
3,125,607	+		LRK54_RS14005	0.78	-2.4
3,125,607	+		LRK54_RS14005	0.78	-0.1
3,125,607	+		LRK54_RS14005	0.78	-0.2
3,125,607	+		LRK54_RS14005	0.78	+0.0
3,125,607	+		LRK54_RS14005	0.78	-1.3
3,125,608	-		LRK54_RS14005	0.78	+1.5
3,125,608	-		LRK54_RS14005	0.78	-0.1
3,125,608	-		LRK54_RS14005	0.78	+1.2
3,125,608	-		LRK54_RS14005	0.78	-0.7
3,125,608	-		LRK54_RS14005	0.78	+0.7
3,125,608	-		LRK54_RS14005	0.78	-0.5
3,125,608	-		LRK54_RS14005	0.78	-1.1
3,125,674	+		LRK54_RS14005	0.87	-0.8
3,125,674	+		LRK54_RS14005	0.87	-0.3
3,125,674	+		LRK54_RS14005	0.87	+0.5
3,125,674	+		LRK54_RS14005	0.87	+1.2
3,125,674	+		LRK54_RS14005	0.87	+0.0
3,125,674	+		LRK54_RS14005	0.87	+1.5
3,125,674	+		LRK54_RS14005	0.87	-0.3
3,125,674	+		LRK54_RS14005	0.87	+0.0
3,125,674	+		LRK54_RS14005	0.87	+0.8
3,125,674	+		LRK54_RS14005	0.87	-0.1
3,125,674	+		LRK54_RS14005	0.87	+0.7
3,125,674	+		LRK54_RS14005	0.87	-1.3
3,125,674	+		LRK54_RS14005	0.87	-1.5
3,125,674	+		LRK54_RS14005	0.87	-2.2
3,125,674	+		LRK54_RS14005	0.87	-0.2
3,125,674	+		LRK54_RS14005	0.87	-0.3
3,125,675	-		LRK54_RS14005	0.88	+0.4
3,125,675	-		LRK54_RS14005	0.88	-0.2
3,125,675	-		LRK54_RS14005	0.88	-0.0
3,125,675	-		LRK54_RS14005	0.88	+2.6
3,125,675	-		LRK54_RS14005	0.88	+0.2
3,125,675	-		LRK54_RS14005	0.88	-0.1
3,125,675	-		LRK54_RS14005	0.88	-0.7
3,125,675	-		LRK54_RS14005	0.88	+0.2
3,125,675	-		LRK54_RS14005	0.88	+0.1
3,125,675	-		LRK54_RS14005	0.88	+0.7
3,125,675	-		LRK54_RS14005	0.88	+0.4
3,125,675	-		LRK54_RS14005	0.88	-1.2
3,125,694	+				-1.7
3,125,694	+				+1.2
3,125,694	+				-0.6
3,125,694	+				-1.1
3,125,694	+				-0.0
3,125,695	-				-0.1
3,125,695	-				-0.4
3,125,695	-				+0.9
3,125,695	-				-0.5
3,125,695	-				-1.4
3,125,695	-				-0.0
3,125,695	-				+1.1
3,125,695	-				-1.1
3,125,695	-				+0.6
3,125,709	+				+0.2
3,125,710	-				-0.8
3,125,746	-				+0.2
3,125,907	-		LRK54_RS14010	0.16	-1.5
3,125,907	-		LRK54_RS14010	0.16	-0.6
3,125,907	-		LRK54_RS14010	0.16	-0.7
3,125,907	-		LRK54_RS14010	0.16	-0.4
3,125,907	-		LRK54_RS14010	0.16	-1.0