Experiment: R2A with FW104 filtrate 0.5 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS13800 and LRK54_RS13805 are separated by 122 nucleotides LRK54_RS13805 and LRK54_RS13810 are separated by 58 nucleotides LRK54_RS13810 and LRK54_RS13815 overlap by 4 nucleotides
LRK54_RS13800: LRK54_RS13800 - DUF1631 domain-containing protein, at 3,078,607 to 3,080,856
_RS13800
LRK54_RS13805: LRK54_RS13805 - hypothetical protein, at 3,080,979 to 3,081,248
_RS13805
LRK54_RS13810: LRK54_RS13810 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 3,081,307 to 3,081,810
_RS13810
LRK54_RS13815: LRK54_RS13815 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 3,081,807 to 3,082,961
_RS13815
Position (kb) 3080
3081
3082 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3080.225 kb on + strand, within LRK54_RS13800 at 3080.225 kb on + strand, within LRK54_RS13800 at 3080.225 kb on + strand, within LRK54_RS13800 at 3080.226 kb on - strand, within LRK54_RS13800 at 3080.226 kb on - strand, within LRK54_RS13800 at 3080.226 kb on - strand, within LRK54_RS13800 at 3080.226 kb on - strand, within LRK54_RS13800 at 3080.252 kb on + strand, within LRK54_RS13800 at 3080.252 kb on + strand, within LRK54_RS13800 at 3080.253 kb on - strand, within LRK54_RS13800 at 3080.253 kb on - strand, within LRK54_RS13800 at 3080.253 kb on - strand, within LRK54_RS13800 at 3080.253 kb on - strand, within LRK54_RS13800 at 3080.253 kb on - strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.270 kb on + strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.271 kb on - strand, within LRK54_RS13800 at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.648 kb on + strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.649 kb on - strand at 3080.924 kb on - strand at 3080.924 kb on - strand at 3080.924 kb on - strand at 3080.937 kb on + strand at 3080.938 kb on - strand at 3080.938 kb on - strand at 3080.938 kb on - strand at 3080.938 kb on - strand at 3080.938 kb on - strand at 3080.938 kb on - strand at 3081.011 kb on + strand, within LRK54_RS13805 at 3081.012 kb on - strand, within LRK54_RS13805 at 3081.012 kb on - strand, within LRK54_RS13805 at 3081.061 kb on + strand, within LRK54_RS13805 at 3081.061 kb on + strand, within LRK54_RS13805 at 3081.062 kb on - strand, within LRK54_RS13805 at 3081.062 kb on - strand, within LRK54_RS13805 at 3081.062 kb on - strand, within LRK54_RS13805 at 3081.062 kb on - strand, within LRK54_RS13805 at 3081.062 kb on - strand, within LRK54_RS13805 at 3081.062 kb on - strand, within LRK54_RS13805 at 3081.062 kb on - strand, within LRK54_RS13805 at 3081.278 kb on + strand at 3081.278 kb on + strand at 3081.278 kb on + strand at 3081.278 kb on + strand at 3081.279 kb on - strand at 3081.279 kb on - strand at 3081.279 kb on - strand at 3081.279 kb on - strand at 3081.279 kb on - strand at 3081.279 kb on - strand at 3081.279 kb on - strand at 3081.283 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X remove 3,080,225 + LRK54_RS13800 0.72 +1.1 3,080,225 + LRK54_RS13800 0.72 +1.5 3,080,225 + LRK54_RS13800 0.72 -0.6 3,080,226 - LRK54_RS13800 0.72 -0.7 3,080,226 - LRK54_RS13800 0.72 +0.9 3,080,226 - LRK54_RS13800 0.72 -1.4 3,080,226 - LRK54_RS13800 0.72 -0.1 3,080,252 + LRK54_RS13800 0.73 -0.9 3,080,252 + LRK54_RS13800 0.73 +0.6 3,080,253 - LRK54_RS13800 0.73 -1.2 3,080,253 - LRK54_RS13800 0.73 -0.2 3,080,253 - LRK54_RS13800 0.73 -0.6 3,080,253 - LRK54_RS13800 0.73 -0.4 3,080,253 - LRK54_RS13800 0.73 +0.1 3,080,270 + LRK54_RS13800 0.74 -0.8 3,080,270 + LRK54_RS13800 0.74 -0.4 3,080,270 + LRK54_RS13800 0.74 +0.6 3,080,270 + LRK54_RS13800 0.74 -1.0 3,080,270 + LRK54_RS13800 0.74 -0.3 3,080,270 + LRK54_RS13800 0.74 +0.8 3,080,270 + LRK54_RS13800 0.74 -2.5 3,080,270 + LRK54_RS13800 0.74 -0.0 3,080,270 + LRK54_RS13800 0.74 -0.9 3,080,270 + LRK54_RS13800 0.74 -0.7 3,080,270 + LRK54_RS13800 0.74 +0.3 3,080,270 + LRK54_RS13800 0.74 -0.9 3,080,270 + LRK54_RS13800 0.74 +1.6 3,080,270 + LRK54_RS13800 0.74 -0.6 3,080,270 + LRK54_RS13800 0.74 +0.3 3,080,270 + LRK54_RS13800 0.74 +1.0 3,080,270 + LRK54_RS13800 0.74 +0.2 3,080,270 + LRK54_RS13800 0.74 -1.2 3,080,270 + LRK54_RS13800 0.74 +0.3 3,080,270 + LRK54_RS13800 0.74 +2.2 3,080,270 + LRK54_RS13800 0.74 +0.8 3,080,270 + LRK54_RS13800 0.74 -0.2 3,080,270 + LRK54_RS13800 0.74 +1.8 3,080,270 + LRK54_RS13800 0.74 +0.1 3,080,270 + LRK54_RS13800 0.74 -0.3 3,080,270 + LRK54_RS13800 0.74 +1.0 3,080,270 + LRK54_RS13800 0.74 +0.3 3,080,270 + LRK54_RS13800 0.74 -1.4 3,080,270 + LRK54_RS13800 0.74 +0.9 3,080,270 + LRK54_RS13800 0.74 +0.4 3,080,271 - LRK54_RS13800 0.74 -0.4 3,080,271 - LRK54_RS13800 0.74 -0.8 3,080,271 - LRK54_RS13800 0.74 +0.6 3,080,271 - LRK54_RS13800 0.74 -0.6 3,080,271 - LRK54_RS13800 0.74 -1.7 3,080,271 - LRK54_RS13800 0.74 +0.3 3,080,271 - LRK54_RS13800 0.74 -0.6 3,080,271 - LRK54_RS13800 0.74 +0.0 3,080,271 - LRK54_RS13800 0.74 +0.9 3,080,271 - LRK54_RS13800 0.74 -0.0 3,080,271 - LRK54_RS13800 0.74 -0.0 3,080,271 - LRK54_RS13800 0.74 -0.1 3,080,271 - LRK54_RS13800 0.74 -0.4 3,080,271 - LRK54_RS13800 0.74 +0.1 3,080,271 - LRK54_RS13800 0.74 +0.8 3,080,271 - LRK54_RS13800 0.74 +0.4 3,080,271 - LRK54_RS13800 0.74 -0.3 3,080,271 - LRK54_RS13800 0.74 +0.0 3,080,271 - LRK54_RS13800 0.74 +0.5 3,080,271 - LRK54_RS13800 0.74 +0.6 3,080,271 - LRK54_RS13800 0.74 +0.2 3,080,271 - LRK54_RS13800 0.74 -0.6 3,080,271 - LRK54_RS13800 0.74 -0.6 3,080,271 - LRK54_RS13800 0.74 -0.7 3,080,271 - LRK54_RS13800 0.74 +0.4 3,080,271 - LRK54_RS13800 0.74 +3.6 3,080,648 + +0.6 3,080,648 + +1.7 3,080,648 + -0.5 3,080,648 + -0.1 3,080,648 + +0.2 3,080,648 + +1.9 3,080,648 + -0.5 3,080,648 + -1.2 3,080,648 + +0.3 3,080,648 + -1.2 3,080,648 + +0.0 3,080,648 + +0.2 3,080,648 + +0.2 3,080,648 + -1.4 3,080,648 + -2.2 3,080,648 + -0.4 3,080,648 + -1.4 3,080,648 + -1.9 3,080,648 + +0.6 3,080,648 + +0.2 3,080,648 + -0.1 3,080,648 + -0.3 3,080,648 + +1.2 3,080,648 + +0.6 3,080,648 + +2.6 3,080,648 + -0.1 3,080,648 + -1.1 3,080,648 + -0.6 3,080,649 - -0.4 3,080,649 - -0.5 3,080,649 - -0.5 3,080,649 - -0.4 3,080,649 - +0.9 3,080,649 - -1.3 3,080,649 - +0.5 3,080,649 - -0.6 3,080,649 - -0.8 3,080,649 - -1.7 3,080,649 - -1.5 3,080,649 - +0.3 3,080,649 - +2.1 3,080,649 - -0.4 3,080,649 - +0.5 3,080,649 - +0.2 3,080,649 - -0.3 3,080,649 - +0.2 3,080,649 - +0.0 3,080,649 - -0.1 3,080,649 - -1.7 3,080,649 - -0.6 3,080,649 - -0.2 3,080,649 - +0.5 3,080,649 - +0.2 3,080,649 - -0.0 3,080,924 - -0.5 3,080,924 - -0.8 3,080,924 - -0.2 3,080,937 + -0.3 3,080,938 - -0.4 3,080,938 - +0.6 3,080,938 - -1.0 3,080,938 - +0.4 3,080,938 - -1.2 3,080,938 - -0.8 3,081,011 + LRK54_RS13805 0.12 -0.7 3,081,012 - LRK54_RS13805 0.12 -0.1 3,081,012 - LRK54_RS13805 0.12 -0.5 3,081,061 + LRK54_RS13805 0.30 +0.6 3,081,061 + LRK54_RS13805 0.30 -0.0 3,081,062 - LRK54_RS13805 0.31 +0.1 3,081,062 - LRK54_RS13805 0.31 +0.2 3,081,062 - LRK54_RS13805 0.31 +0.6 3,081,062 - LRK54_RS13805 0.31 +0.6 3,081,062 - LRK54_RS13805 0.31 +1.2 3,081,062 - LRK54_RS13805 0.31 +0.5 3,081,062 - LRK54_RS13805 0.31 +0.7 3,081,278 + +0.4 3,081,278 + -0.4 3,081,278 + -1.1 3,081,278 + -0.5 3,081,279 - +0.0 3,081,279 - +0.4 3,081,279 - +0.8 3,081,279 - -0.5 3,081,279 - -0.5 3,081,279 - +1.0 3,081,279 - -0.5 3,081,283 + +0.2
Or see this region's nucleotide sequence