Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13750

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,068,438	+		LRK54_RS13740	0.61	+0.9
3,068,438	+		LRK54_RS13740	0.61	+1.5
3,068,438	+		LRK54_RS13740	0.61	+0.1
3,068,438	+		LRK54_RS13740	0.61	-1.6
3,068,438	+		LRK54_RS13740	0.61	-0.4
3,068,438	+		LRK54_RS13740	0.61	-0.3
3,068,438	+		LRK54_RS13740	0.61	-0.1
3,068,438	+		LRK54_RS13740	0.61	-0.1
3,068,438	+		LRK54_RS13740	0.61	-0.3
3,068,438	+		LRK54_RS13740	0.61	-0.3
3,068,439	-		LRK54_RS13740	0.61	+0.5
3,068,439	-		LRK54_RS13740	0.61	-0.2
3,068,439	-		LRK54_RS13740	0.61	-1.5
3,068,439	-		LRK54_RS13740	0.61	+0.6
3,068,439	-		LRK54_RS13740	0.61	-2.5
3,068,439	-		LRK54_RS13740	0.61	+0.0
3,068,439	-		LRK54_RS13740	0.61	+2.5
3,068,439	-		LRK54_RS13740	0.61	+1.1
3,068,439	-		LRK54_RS13740	0.61	-2.4
3,068,439	-		LRK54_RS13740	0.61	-0.1
3,068,439	-		LRK54_RS13740	0.61	-1.8
3,068,439	-		LRK54_RS13740	0.61	+0.5
3,068,439	-		LRK54_RS13740	0.61	-1.0
3,068,439	-		LRK54_RS13740	0.61	+0.8
3,068,439	-		LRK54_RS13740	0.61	-2.9
3,068,439	-		LRK54_RS13740	0.61	-0.1
3,068,531	+		LRK54_RS13740	0.69	+0.4
3,068,531	+		LRK54_RS13740	0.69	-0.0
3,068,532	-		LRK54_RS13740	0.70	+0.1
3,068,532	-		LRK54_RS13740	0.70	-1.0
3,068,532	-		LRK54_RS13740	0.70	+0.2
3,068,532	-		LRK54_RS13740	0.70	-1.4
3,068,532	-		LRK54_RS13740	0.70	-0.3
3,068,796	+				+0.2
3,068,796	+				-0.3
3,068,796	+				-1.5
3,068,796	+				-1.4
3,068,796	+				+0.9
3,068,796	+				-0.3
3,068,796	+				-0.2
3,068,796	+				-0.9
3,068,797	-				+0.0
3,068,797	-				-1.3
3,068,797	-				+0.3
3,068,797	-				-0.0
3,068,797	-				-1.8
3,068,797	-				+0.3
3,068,919	+				-0.9
3,068,919	+				-1.6
3,068,919	+				-0.8
3,068,919	+				+0.7
3,068,919	+				+1.8
3,068,919	+				-0.2
3,068,919	+				-0.3
3,068,919	+				-0.8
3,068,919	+				-0.5
3,068,919	+				-0.7
3,068,919	+				-0.1
3,068,919	+				-0.3
3,068,919	+				-2.3
3,068,920	-				-0.3
3,068,920	-				+2.2
3,068,920	-				+1.2
3,068,920	-				+0.2
3,069,138	+		LRK54_RS13745	0.49	-1.0
3,069,138	+		LRK54_RS13745	0.49	-0.4
3,069,138	+		LRK54_RS13745	0.49	-0.1
3,069,138	+		LRK54_RS13745	0.49	-0.9
3,069,138	+		LRK54_RS13745	0.49	-0.2
3,069,138	+		LRK54_RS13745	0.49	-1.0
3,069,138	+		LRK54_RS13745	0.49	-0.6
3,069,138	+		LRK54_RS13745	0.49	+0.8
3,069,138	+		LRK54_RS13745	0.49	+1.7
3,069,138	+		LRK54_RS13745	0.49	+0.4
3,069,138	+		LRK54_RS13745	0.49	+0.1
3,069,138	+		LRK54_RS13745	0.49	+0.2
3,069,138	+		LRK54_RS13745	0.49	-0.6
3,069,138	+		LRK54_RS13745	0.49	+0.4
3,069,138	+		LRK54_RS13745	0.49	+0.7
3,069,138	+		LRK54_RS13745	0.49	+1.4
3,069,138	+		LRK54_RS13745	0.49	+1.4
3,069,138	+		LRK54_RS13745	0.49	+0.7
3,069,138	+		LRK54_RS13745	0.49	+0.2
3,069,138	+		LRK54_RS13745	0.49	+1.3
3,069,138	+		LRK54_RS13745	0.49	-0.9
3,069,139	-		LRK54_RS13745	0.49	+0.8
3,069,139	-		LRK54_RS13745	0.49	+0.1
3,069,139	-		LRK54_RS13745	0.49	-0.1
3,069,139	-		LRK54_RS13745	0.49	-0.2
3,069,139	-		LRK54_RS13745	0.49	+0.4
3,069,139	-		LRK54_RS13745	0.49	+2.0
3,069,139	-		LRK54_RS13745	0.49	-1.6
3,069,139	-		LRK54_RS13745	0.49	+1.4
3,069,139	-		LRK54_RS13745	0.49	+0.9
3,069,139	-		LRK54_RS13745	0.49	+0.0
3,069,139	-		LRK54_RS13745	0.49	+0.4
3,069,139	-		LRK54_RS13745	0.49	-0.2
3,069,139	-		LRK54_RS13745	0.49	-0.6
3,069,139	-		LRK54_RS13745	0.49	+0.3
3,069,139	-		LRK54_RS13745	0.49	-0.2
3,069,139	-		LRK54_RS13745	0.49	-0.5
3,069,139	-		LRK54_RS13745	0.49	+2.2
3,069,139	-		LRK54_RS13745	0.49	-0.9
3,069,139	-		LRK54_RS13745	0.49	+0.8
3,069,139	-		LRK54_RS13745	0.49	-0.6
3,069,192	+		LRK54_RS13745	0.60	-0.1
3,069,192	+		LRK54_RS13745	0.60	-0.1
3,069,291	+		LRK54_RS13745	0.80	-0.8
3,069,291	+		LRK54_RS13745	0.80	-0.6
3,069,291	+		LRK54_RS13745	0.80	+1.0
3,069,291	+		LRK54_RS13745	0.80	-1.1
3,069,291	+		LRK54_RS13745	0.80	+0.2
3,069,291	+		LRK54_RS13745	0.80	-0.1
3,069,291	+		LRK54_RS13745	0.80	+0.1
3,069,291	+		LRK54_RS13745	0.80	+0.3
3,069,291	+		LRK54_RS13745	0.80	-0.3
3,069,291	+		LRK54_RS13745	0.80	-1.2
3,069,291	+		LRK54_RS13745	0.80	-1.2
3,069,291	+		LRK54_RS13745	0.80	+0.2
3,069,291	+		LRK54_RS13745	0.80	+0.3
3,069,291	+		LRK54_RS13745	0.80	-1.1
3,069,291	+		LRK54_RS13745	0.80	-0.7
3,069,291	+		LRK54_RS13745	0.80	-0.1
3,069,291	+		LRK54_RS13745	0.80	+0.8
3,069,291	+		LRK54_RS13745	0.80	-0.6
3,069,291	+		LRK54_RS13745	0.80	-1.3
3,069,291	+		LRK54_RS13745	0.80	-0.9
3,069,291	+		LRK54_RS13745	0.80	+1.9
3,069,291	+		LRK54_RS13745	0.80	+0.5
3,069,291	+		LRK54_RS13745	0.80	-2.2
3,069,291	+		LRK54_RS13745	0.80	-0.1
3,069,291	+		LRK54_RS13745	0.80	-0.5
3,069,291	+		LRK54_RS13745	0.80	-0.6
3,069,291	+		LRK54_RS13745	0.80	-2.2
3,069,291	+		LRK54_RS13745	0.80	+0.1
3,069,292	-		LRK54_RS13745	0.80	-0.1
3,069,292	-		LRK54_RS13745	0.80	-1.3
3,069,292	-		LRK54_RS13745	0.80	+0.8
3,069,292	-		LRK54_RS13745	0.80	+0.8
3,069,292	-		LRK54_RS13745	0.80	-1.3
3,069,292	-		LRK54_RS13745	0.80	-1.3
3,069,292	-		LRK54_RS13745	0.80	+0.5
3,069,292	-		LRK54_RS13745	0.80	+0.7
3,069,292	-		LRK54_RS13745	0.80	-0.7
3,069,292	-		LRK54_RS13745	0.80	-0.7
3,069,292	-		LRK54_RS13745	0.80	-1.2
3,069,292	-		LRK54_RS13745	0.80	-0.4
3,069,292	-		LRK54_RS13745	0.80	+1.1
3,069,292	-		LRK54_RS13745	0.80	-1.2
3,069,292	-		LRK54_RS13745	0.80	-0.8
3,069,292	-		LRK54_RS13745	0.80	+0.3
3,069,292	-		LRK54_RS13745	0.80	-0.0
3,069,292	-		LRK54_RS13745	0.80	+0.0
3,069,297	+		LRK54_RS13745	0.81	+0.1
3,069,297	+		LRK54_RS13745	0.81	-0.1
3,069,297	+		LRK54_RS13745	0.81	+0.5
3,069,297	+		LRK54_RS13745	0.81	-1.0
3,069,297	+		LRK54_RS13745	0.81	+0.7
3,069,297	+		LRK54_RS13745	0.81	+0.2
3,069,297	+		LRK54_RS13745	0.81	+0.8
3,069,297	+		LRK54_RS13745	0.81	+0.6
3,069,297	+		LRK54_RS13745	0.81	-0.6
3,069,297	+		LRK54_RS13745	0.81	-0.0
3,069,297	+		LRK54_RS13745	0.81	-1.2
3,069,297	+		LRK54_RS13745	0.81	-2.6
3,069,297	+		LRK54_RS13745	0.81	-1.1
3,069,297	+		LRK54_RS13745	0.81	+1.3
3,069,297	+		LRK54_RS13745	0.81	+1.2
3,069,297	+		LRK54_RS13745	0.81	-0.5
3,069,297	+		LRK54_RS13745	0.81	-0.4
3,069,297	+		LRK54_RS13745	0.81	-0.9
3,069,297	+		LRK54_RS13745	0.81	+0.9
3,069,297	+		LRK54_RS13745	0.81	+0.5
3,069,297	+		LRK54_RS13745	0.81	+0.8
3,069,297	+		LRK54_RS13745	0.81	+0.4
3,069,297	+		LRK54_RS13745	0.81	-1.5
3,069,297	+		LRK54_RS13745	0.81	-0.1
3,069,297	+		LRK54_RS13745	0.81	+1.1
3,069,297	+		LRK54_RS13745	0.81	+0.4
3,069,297	+		LRK54_RS13745	0.81	+0.8
3,069,297	+		LRK54_RS13745	0.81	+0.2
3,069,297	+		LRK54_RS13745	0.81	-1.0
3,069,297	+		LRK54_RS13745	0.81	-0.1
3,069,297	+		LRK54_RS13745	0.81	+0.2
3,069,297	+		LRK54_RS13745	0.81	-0.3
3,069,297	+		LRK54_RS13745	0.81	-0.5
3,069,297	+		LRK54_RS13745	0.81	+1.1
3,069,297	+		LRK54_RS13745	0.81	-0.9
3,069,297	+		LRK54_RS13745	0.81	+0.1
3,069,297	+		LRK54_RS13745	0.81	+1.7
3,069,297	+		LRK54_RS13745	0.81	-1.2
3,069,297	+		LRK54_RS13745	0.81	+0.4
3,069,297	+		LRK54_RS13745	0.81	-0.6
3,069,297	+		LRK54_RS13745	0.81	+0.4
3,069,297	+		LRK54_RS13745	0.81	-1.7
3,069,297	+		LRK54_RS13745	0.81	+0.2
3,069,297	+		LRK54_RS13745	0.81	-1.2
3,069,297	+		LRK54_RS13745	0.81	-0.8
3,069,297	+		LRK54_RS13745	0.81	-0.9
3,069,298	-		LRK54_RS13745	0.81	-0.5
3,069,298	-		LRK54_RS13745	0.81	-0.7
3,069,298	-		LRK54_RS13745	0.81	-0.2
3,069,298	-		LRK54_RS13745	0.81	-0.1
3,069,298	-		LRK54_RS13745	0.81	+0.2
3,069,298	-		LRK54_RS13745	0.81	-0.9
3,069,298	-		LRK54_RS13745	0.81	+0.2
3,069,298	-		LRK54_RS13745	0.81	+0.3
3,069,298	-		LRK54_RS13745	0.81	+0.7
3,069,298	-		LRK54_RS13745	0.81	+0.4
3,069,298	-		LRK54_RS13745	0.81	+1.2
3,069,298	-		LRK54_RS13745	0.81	-1.4
3,069,298	-		LRK54_RS13745	0.81	+0.6
3,069,298	-		LRK54_RS13745	0.81	-0.3
3,069,298	-		LRK54_RS13745	0.81	-0.1
3,069,298	-		LRK54_RS13745	0.81	-2.2
3,069,298	-		LRK54_RS13745	0.81	-0.1
3,069,298	-		LRK54_RS13745	0.81	-0.5
3,069,298	-		LRK54_RS13745	0.81	+0.7
3,069,298	-		LRK54_RS13745	0.81	-1.5
3,069,298	-		LRK54_RS13745	0.81	+3.0
3,069,298	-		LRK54_RS13745	0.81	-0.3
3,069,298	-		LRK54_RS13745	0.81	+0.4
3,069,298	-		LRK54_RS13745	0.81	-0.6
3,069,298	-		LRK54_RS13745	0.81	+0.2
3,069,298	-		LRK54_RS13745	0.81	+0.1
3,069,298	-		LRK54_RS13745	0.81	-0.3
3,069,298	-		LRK54_RS13745	0.81	+0.1
3,069,298	-		LRK54_RS13745	0.81	+0.5
3,069,298	-		LRK54_RS13745	0.81	-0.6
3,069,298	-		LRK54_RS13745	0.81	+1.8
3,069,298	-		LRK54_RS13745	0.81	-0.2
3,069,298	-		LRK54_RS13745	0.81	+0.0
3,069,298	-		LRK54_RS13745	0.81	+0.4
3,069,298	-		LRK54_RS13745	0.81	-0.7
3,069,298	-		LRK54_RS13745	0.81	-0.3
3,069,298	-		LRK54_RS13745	0.81	+0.8
3,069,298	-		LRK54_RS13745	0.81	+0.2
3,069,298	-		LRK54_RS13745	0.81	+0.5
3,069,298	-		LRK54_RS13745	0.81	-0.1
3,069,298	-		LRK54_RS13745	0.81	+0.2
3,069,298	-		LRK54_RS13745	0.81	-0.8
3,069,298	-		LRK54_RS13745	0.81	+0.4
3,069,298	-		LRK54_RS13745	0.81	-0.3
3,069,298	-		LRK54_RS13745	0.81	-0.7
3,069,298	-		LRK54_RS13745	0.81	-0.8
3,069,298	-		LRK54_RS13745	0.81	-0.0
3,069,298	-		LRK54_RS13745	0.81	+0.1
3,069,298	-		LRK54_RS13745	0.81	+1.4
3,069,298	-		LRK54_RS13745	0.81	-1.2
3,069,298	-		LRK54_RS13745	0.81	+0.0
3,069,298	-		LRK54_RS13745	0.81	+0.7
3,069,301	+		LRK54_RS13745	0.82	-2.2
3,069,301	+		LRK54_RS13745	0.82	+0.1
3,069,301	+		LRK54_RS13745	0.82	+0.1
3,069,302	-		LRK54_RS13745	0.82	-0.2
3,069,302	-		LRK54_RS13745	0.82	+1.0
3,069,302	-		LRK54_RS13745	0.82	-0.2
3,069,302	-		LRK54_RS13745	0.82	-1.7
3,069,302	-		LRK54_RS13745	0.82	+0.7
3,069,302	-		LRK54_RS13745	0.82	+0.8
3,069,302	-		LRK54_RS13745	0.82	-0.2
3,069,302	-		LRK54_RS13745	0.82	+0.0
3,069,424	+				-0.4
3,069,424	+				-1.8
3,069,424	+				+2.2
3,069,424	+				+0.2
3,069,425	-				+0.2
3,069,515	+				-1.9
3,069,515	+				+0.5
3,069,515	+				+0.2
3,069,515	+				-0.6
3,069,516	-				-0.2
3,069,516	-				+0.2
3,069,516	-				-0.2
3,069,516	-				-0.2
3,069,516	-				-0.5
3,069,516	-				+0.2
3,069,516	-				-0.9
3,069,516	-				-0.3
3,069,899	+		LRK54_RS13750	0.38	-0.1
3,069,900	-		LRK54_RS13750	0.38	+0.5
3,069,959	+		LRK54_RS13750	0.42	+0.3
3,069,959	+		LRK54_RS13750	0.42	-0.5
3,069,959	+		LRK54_RS13750	0.42	-0.2
3,069,959	+		LRK54_RS13750	0.42	-0.5
3,069,959	+		LRK54_RS13750	0.42	+1.1
3,069,959	+		LRK54_RS13750	0.42	-0.9
3,069,959	+		LRK54_RS13750	0.42	+0.0
3,069,959	+		LRK54_RS13750	0.42	+1.6
3,069,959	+		LRK54_RS13750	0.42	-0.9
3,069,959	+		LRK54_RS13750	0.42	-0.9
3,069,959	+		LRK54_RS13750	0.42	-1.9
3,069,959	+		LRK54_RS13750	0.42	+0.7
3,069,959	+		LRK54_RS13750	0.42	-0.5
3,069,959	+		LRK54_RS13750	0.42	-0.5
3,069,960	-		LRK54_RS13750	0.42	+0.3
3,069,960	-		LRK54_RS13750	0.42	-1.5
3,069,960	-		LRK54_RS13750	0.42	-0.7
3,069,960	-		LRK54_RS13750	0.42	+0.7
3,069,960	-		LRK54_RS13750	0.42	-0.9
3,069,960	-		LRK54_RS13750	0.42	-0.2
3,069,960	-		LRK54_RS13750	0.42	-1.9
3,069,960	-		LRK54_RS13750	0.42	+0.1
3,069,960	-		LRK54_RS13750	0.42	+0.4
3,069,960	-		LRK54_RS13750	0.42	+0.9
3,069,986	+		LRK54_RS13750	0.44	-1.2
3,069,986	+		LRK54_RS13750	0.44	+0.2
3,069,987	-		LRK54_RS13750	0.44	-0.5
3,070,124	+		LRK54_RS13750	0.54	-0.5
3,070,238	+		LRK54_RS13750	0.63	+0.3
3,070,238	+		LRK54_RS13750	0.63	+0.9
3,070,238	+		LRK54_RS13750	0.63	-1.8
3,070,238	+		LRK54_RS13750	0.63	-1.5
3,070,239	-		LRK54_RS13750	0.63	-0.3
3,070,239	-		LRK54_RS13750	0.63	+0.8
3,070,253	+		LRK54_RS13750	0.64	-1.1
3,070,253	+		LRK54_RS13750	0.64	-0.0
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3,071,549	+		LRK54_RS13755	0.45	-0.0
3,071,549	+		LRK54_RS13755	0.45	-2.2
3,071,549	+		LRK54_RS13755	0.45	-0.5
3,071,549	+		LRK54_RS13755	0.45	-0.6
3,071,549	+		LRK54_RS13755	0.45	-0.2
3,071,549	+		LRK54_RS13755	0.45	+0.2
3,071,549	+		LRK54_RS13755	0.45	+1.2
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3,071,549	+		LRK54_RS13755	0.45	+0.8
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3,071,549	+		LRK54_RS13755	0.45	-1.6
3,071,549	+		LRK54_RS13755	0.45	+0.5
3,071,549	+		LRK54_RS13755	0.45	+0.4
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3,071,549	+		LRK54_RS13755	0.45	-0.7
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3,071,550	-		LRK54_RS13755	0.45	-0.6
3,071,550	-		LRK54_RS13755	0.45	+1.1
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3,071,550	-		LRK54_RS13755	0.45	-0.2
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3,071,612	+		LRK54_RS13755	0.51	+2.7
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3,071,613	-		LRK54_RS13755	0.51	+0.1
3,071,688	-		LRK54_RS13755	0.59	+0.3
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3,071,720	+		LRK54_RS13755	0.62	+0.3
3,071,720	+		LRK54_RS13755	0.62	+0.1
3,071,720	+		LRK54_RS13755	0.62	-1.7
3,071,721	-		LRK54_RS13755	0.62	+0.9