Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13545

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,030,460	+		LRK54_RS13530	0.86	+1.2
3,030,460	+		LRK54_RS13530	0.86	-1.3
3,030,461	-		LRK54_RS13530	0.87	+0.0
3,030,461	-		LRK54_RS13530	0.87	-1.5
3,030,461	-		LRK54_RS13530	0.87	+0.2
3,030,461	-		LRK54_RS13530	0.87	-1.2
3,030,494	-		LRK54_RS13530	0.90	-0.7
3,030,494	-		LRK54_RS13530	0.90	-0.1
3,030,494	-		LRK54_RS13530	0.90	-0.2
3,030,494	-		LRK54_RS13530	0.90	-0.5
3,030,965	+				+0.7
3,030,966	-				-0.0
3,031,258	+		LRK54_RS13540	0.76	-0.2
3,031,258	+		LRK54_RS13540	0.76	+1.5
3,031,258	+		LRK54_RS13540	0.76	+0.4
3,031,259	-		LRK54_RS13540	0.76	+0.5
3,031,259	-		LRK54_RS13540	0.76	-1.5
3,031,690	-		LRK54_RS13545	0.45	+1.1
3,031,690	-		LRK54_RS13545	0.45	-1.8
3,031,710	+		LRK54_RS13545	0.48	+0.6
3,031,710	+		LRK54_RS13545	0.48	-0.2
3,031,710	+		LRK54_RS13545	0.48	-0.5
3,031,710	+		LRK54_RS13545	0.48	-0.1
3,031,710	+		LRK54_RS13545	0.48	-0.4
3,031,710	+		LRK54_RS13545	0.48	+1.2
3,031,711	-		LRK54_RS13545	0.48	+0.5
3,031,711	-		LRK54_RS13545	0.48	+0.8
3,031,711	-		LRK54_RS13545	0.48	+0.2
3,031,711	-		LRK54_RS13545	0.48	-0.2
3,031,711	-		LRK54_RS13545	0.48	+1.0
3,031,711	-		LRK54_RS13545	0.48	+0.5
3,031,711	-		LRK54_RS13545	0.48	+0.7
3,031,711	-		LRK54_RS13545	0.48	-0.2
3,031,711	-		LRK54_RS13545	0.48	+1.1
3,031,839	+		LRK54_RS13545	0.65	-0.3
3,032,094	+				+0.6
3,032,094	+				+0.7
3,032,094	+				-0.6
3,032,094	+				-0.2
3,032,094	+				+0.1
3,032,094	+				-0.3
3,032,094	+				+0.3
3,032,094	+				+1.2
3,032,095	-				-0.1
3,032,095	-				+0.2
3,032,130	+				-0.3
3,032,130	+				-0.1
3,032,130	+				+0.6
3,032,130	+				+0.0
3,032,130	+				-2.3
3,032,130	+				-0.3
3,032,130	+				-1.2
3,032,130	+				-0.1
3,032,131	-				+1.2
3,032,131	-				+0.6
3,032,131	-				+0.2
3,032,131	-				-1.2
3,032,131	-				-0.1
3,032,131	-				-0.2
3,032,131	-				+0.0
3,032,131	-				-0.4
3,032,131	-				-0.4
3,032,227	-				-0.1
3,032,227	-				+0.2
3,032,227	-				-1.6
3,032,227	-				-0.4
3,032,227	-				-0.9
3,032,227	-				-0.1
3,032,256	+				+0.2
3,032,256	+				+0.9
3,032,256	+				+0.8
3,032,437	+				-0.6
3,032,437	+				-0.6
3,032,600	-				+0.8
3,032,779	+				+0.2
3,032,779	+				+1.0
3,032,779	+				-1.0
3,032,779	+				+0.2
3,032,779	+				+0.0
3,032,779	+				+0.5
3,032,779	+				+0.8
3,032,779	+				-0.7
3,032,779	+				+0.2
3,032,779	+				-0.8
3,032,779	+				+0.3
3,032,779	+				+0.1
3,032,780	-				+0.3
3,032,780	-				-0.2
3,032,780	-				+0.9
3,032,780	-				+0.1
3,032,780	-				+0.1
3,032,780	-				-1.0
3,032,780	-				-1.1
3,032,780	-				+2.0
3,032,780	-				-1.6
3,032,780	-				+0.7
3,032,780	-				+0.1
3,032,780	-				-0.1
3,032,780	-				+0.6
3,032,780	-				-0.6
3,032,780	-				-0.7
3,032,780	-				+1.1
3,032,780	-				-0.5
3,032,780	-				+0.5
3,032,809	+				-0.2
3,032,809	+				-0.3
3,032,809	+				-1.4
3,032,809	+				+0.0
3,032,809	+				-0.5
3,032,809	+				-1.3
3,032,809	+				-0.3
3,032,809	+				-0.7
3,032,810	-				-0.3
3,032,810	-				-0.8
3,032,810	-				+0.2
3,032,810	-				+2.7
3,032,810	-				+0.3
3,032,810	-				-0.1
3,032,947	+				-0.2
3,032,948	-				+1.5
3,033,004	+		LRK54_RS13550	0.16	+0.2
3,033,004	+		LRK54_RS13550	0.16	+0.3
3,033,004	+		LRK54_RS13550	0.16	+1.1
3,033,004	+		LRK54_RS13550	0.16	+0.5
3,033,004	+		LRK54_RS13550	0.16	-0.9
3,033,004	+		LRK54_RS13550	0.16	+0.5
3,033,004	+		LRK54_RS13550	0.16	-1.2
3,033,004	+		LRK54_RS13550	0.16	+0.3
3,033,004	+		LRK54_RS13550	0.16	+0.5
3,033,004	+		LRK54_RS13550	0.16	+0.4
3,033,004	+		LRK54_RS13550	0.16	-0.6
3,033,005	-		LRK54_RS13550	0.16	+1.0
3,033,005	-		LRK54_RS13550	0.16	-0.3
3,033,005	-		LRK54_RS13550	0.16	+0.7
3,033,005	-		LRK54_RS13550	0.16	+1.2
3,033,005	-		LRK54_RS13550	0.16	-1.2
3,033,005	-		LRK54_RS13550	0.16	-0.2
3,033,005	-		LRK54_RS13550	0.16	+0.1
3,033,005	-		LRK54_RS13550	0.16	+1.4