Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13485

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,019,492	+				-0.2
3,019,492	+				-1.4
3,019,743	+		LRK54_RS13480	0.48	+0.4
3,019,743	+		LRK54_RS13480	0.48	-0.3
3,019,743	+		LRK54_RS13480	0.48	-1.2
3,019,743	+		LRK54_RS13480	0.48	+0.6
3,019,743	+		LRK54_RS13480	0.48	-0.7
3,019,743	+		LRK54_RS13480	0.48	-1.7
3,019,743	+		LRK54_RS13480	0.48	-0.9
3,019,743	+		LRK54_RS13480	0.48	-0.1
3,019,743	+		LRK54_RS13480	0.48	+0.5
3,019,744	-		LRK54_RS13480	0.48	+0.2
3,019,744	-		LRK54_RS13480	0.48	-0.2
3,019,744	-		LRK54_RS13480	0.48	+0.6
3,019,744	-		LRK54_RS13480	0.48	+1.2
3,019,744	-		LRK54_RS13480	0.48	+1.2
3,019,744	-		LRK54_RS13480	0.48	+0.3
3,019,744	-		LRK54_RS13480	0.48	-0.5
3,019,744	-		LRK54_RS13480	0.48	-0.5
3,019,744	-		LRK54_RS13480	0.48	+0.1
3,019,744	-		LRK54_RS13480	0.48	-0.0
3,019,744	-		LRK54_RS13480	0.48	+1.0
3,020,182	+				+0.4
3,020,182	+				-0.3
3,020,183	-				-2.0
3,020,206	+				+0.5
3,020,206	+				-0.4
3,020,206	+				+1.1
3,020,206	+				-0.5
3,020,207	-				-0.3
3,020,207	-				+0.2
3,020,207	-				-0.5
3,020,219	+				-0.3
3,020,219	+				+0.2
3,020,219	+				+0.6
3,020,219	+				+0.5
3,020,220	-				+0.1
3,020,220	-				+0.1
3,020,302	+				+0.9
3,020,302	+				-0.2
3,020,302	+				-0.2
3,020,302	+				-1.8
3,020,303	-				+0.3
3,020,303	-				-0.8
3,020,303	-				+0.3
3,020,303	-				+0.1
3,020,303	-				+0.6
3,020,560	+		LRK54_RS13485	0.10	-0.2
3,020,560	+		LRK54_RS13485	0.10	+1.0
3,020,560	+		LRK54_RS13485	0.10	+1.7
3,020,560	+		LRK54_RS13485	0.10	+0.7
3,020,560	+		LRK54_RS13485	0.10	+0.4
3,020,560	+		LRK54_RS13485	0.10	-0.4
3,020,560	+		LRK54_RS13485	0.10	+0.2
3,020,561	-		LRK54_RS13485	0.10	+0.6
3,020,561	-		LRK54_RS13485	0.10	+0.4
3,020,561	-		LRK54_RS13485	0.10	-0.2
3,020,561	-		LRK54_RS13485	0.10	+0.1
3,020,561	-		LRK54_RS13485	0.10	+0.5
3,020,561	-		LRK54_RS13485	0.10	+0.0
3,020,734	+		LRK54_RS13485	0.23	+3.2
3,020,735	-		LRK54_RS13485	0.23	+0.2
3,020,735	-		LRK54_RS13485	0.23	-0.1
3,020,767	+		LRK54_RS13485	0.25	-1.4
3,020,767	+		LRK54_RS13485	0.25	-0.3
3,020,767	+		LRK54_RS13485	0.25	-0.4
3,020,767	+		LRK54_RS13485	0.25	+1.4
3,020,767	+		LRK54_RS13485	0.25	-0.5
3,020,767	+		LRK54_RS13485	0.25	-0.1
3,020,767	+		LRK54_RS13485	0.25	+0.9
3,020,767	+		LRK54_RS13485	0.25	+0.8
3,020,767	+		LRK54_RS13485	0.25	+0.7
3,020,767	+		LRK54_RS13485	0.25	-1.1
3,020,767	+		LRK54_RS13485	0.25	+0.2
3,020,767	+		LRK54_RS13485	0.25	+0.2
3,020,767	+		LRK54_RS13485	0.25	+0.7
3,020,767	+		LRK54_RS13485	0.25	+0.0
3,020,767	+		LRK54_RS13485	0.25	-0.6
3,020,767	+		LRK54_RS13485	0.25	-0.2
3,020,767	+		LRK54_RS13485	0.25	+0.4
3,020,767	+		LRK54_RS13485	0.25	-0.5
3,020,767	+		LRK54_RS13485	0.25	+0.5
3,020,767	+		LRK54_RS13485	0.25	-0.3
3,020,767	+		LRK54_RS13485	0.25	+1.0
3,020,767	+		LRK54_RS13485	0.25	+0.0
3,020,767	+		LRK54_RS13485	0.25	+0.5
3,020,767	+		LRK54_RS13485	0.25	+0.9
3,020,767	+		LRK54_RS13485	0.25	+0.4
3,020,768	-		LRK54_RS13485	0.25	-0.6
3,020,768	-		LRK54_RS13485	0.25	+0.4
3,020,768	-		LRK54_RS13485	0.25	+0.9
3,020,768	-		LRK54_RS13485	0.25	+0.6
3,020,768	-		LRK54_RS13485	0.25	-0.1
3,020,768	-		LRK54_RS13485	0.25	+0.5
3,020,768	-		LRK54_RS13485	0.25	+1.1
3,020,768	-		LRK54_RS13485	0.25	-0.5
3,020,768	-		LRK54_RS13485	0.25	-0.2
3,020,768	-		LRK54_RS13485	0.25	+0.2
3,020,768	-		LRK54_RS13485	0.25	+0.5
3,020,768	-		LRK54_RS13485	0.25	-0.1
3,020,768	-		LRK54_RS13485	0.25	+0.9
3,020,768	-		LRK54_RS13485	0.25	-0.6
3,020,768	-		LRK54_RS13485	0.25	-0.9
3,020,768	-		LRK54_RS13485	0.25	+0.2
3,020,768	-		LRK54_RS13485	0.25	+0.2
3,020,768	-		LRK54_RS13485	0.25	-0.6
3,020,768	-		LRK54_RS13485	0.25	-0.6
3,020,768	-		LRK54_RS13485	0.25	-1.0
3,020,768	-		LRK54_RS13485	0.25	+0.2
3,020,768	-		LRK54_RS13485	0.25	+0.1
3,021,169	+		LRK54_RS13485	0.53	+0.3
3,021,170	-		LRK54_RS13485	0.53	-0.2
3,021,170	-		LRK54_RS13485	0.53	+0.0
3,021,170	-		LRK54_RS13485	0.53	+0.4
3,021,170	-		LRK54_RS13485	0.53	+1.6
3,021,170	-		LRK54_RS13485	0.53	+0.6
3,021,284	-		LRK54_RS13485	0.61	-1.5
3,021,284	-		LRK54_RS13485	0.61	+0.8
3,021,284	-		LRK54_RS13485	0.61	+1.2
3,021,538	+		LRK54_RS13485	0.79	+0.0
3,021,538	+		LRK54_RS13485	0.79	+0.3
3,021,539	-		LRK54_RS13485	0.79	-0.0
3,021,539	-		LRK54_RS13485	0.79	-1.1
3,021,539	-		LRK54_RS13485	0.79	+0.1
3,021,539	-		LRK54_RS13485	0.79	+0.2
3,021,808	+				+2.2
3,021,808	+				+0.4
3,021,808	+				+0.7
3,021,808	+				+0.6
3,021,808	+				+0.4
3,021,808	+				+0.4
3,021,809	-				+1.0
3,021,809	-				+0.2
3,021,809	-				+0.4
3,021,809	-				+2.0
3,021,809	-				-0.3
3,021,809	-				+0.2
3,021,809	-				+0.3
3,021,809	-				+0.4
3,021,913	-				-0.6
3,021,913	-				-0.3
3,021,913	-				-0.2
3,022,296	+				-1.0
3,022,296	+				-0.5
3,022,296	+				+0.6
3,022,296	+				+1.5
3,022,296	+				+0.4
3,022,296	+				+1.1
3,022,296	+				-0.8
3,022,297	-				-1.9
3,022,297	-				+0.2
3,022,297	-				+0.3
3,022,297	-				+0.5
3,022,297	-				-0.5
3,022,297	-				+0.3
3,022,297	-				+0.1
3,022,297	-				-0.2
3,022,356	-				+0.5
3,022,411	+				+2.2
3,022,538	+				-0.1
3,022,538	+				+0.5
3,022,538	+				+0.3
3,022,539	-				-0.3
3,022,539	-				+0.1
3,022,539	-				-0.4
3,022,539	-				+0.5
3,022,550	+		LRK54_RS13495	0.10	+0.9
3,022,550	+		LRK54_RS13495	0.10	-0.0
3,022,550	+		LRK54_RS13495	0.10	-0.1
3,022,551	-		LRK54_RS13495	0.10	+0.4
3,022,551	-		LRK54_RS13495	0.10	+0.2
3,022,551	-		LRK54_RS13495	0.10	-0.2
3,022,551	-		LRK54_RS13495	0.10	-0.8
3,022,551	-		LRK54_RS13495	0.10	+1.2
3,022,616	+		LRK54_RS13495	0.14	+1.2
3,022,616	+		LRK54_RS13495	0.14	+0.7
3,022,616	+		LRK54_RS13495	0.14	-0.6
3,022,784	+		LRK54_RS13495	0.24	+0.2
3,022,785	-		LRK54_RS13495	0.24	+0.3
3,022,785	-		LRK54_RS13495	0.24	+0.0