Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12985

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
2,899,360	+				-0.9
2,899,360	+				-0.4
2,899,360	+				-3.0
2,899,360	+				-0.7
2,899,360	+				-0.9
2,899,360	+				-0.3
2,899,360	+				-0.5
2,899,360	+				+0.1
2,899,360	+				+1.3
2,899,360	+				+0.2
2,899,361	-				-0.8
2,899,361	-				-1.6
2,899,361	-				+2.2
2,899,361	-				-1.5
2,899,361	-				-0.7
2,899,361	-				-0.2
2,899,361	-				+0.1
2,899,361	-				-0.5
2,899,361	-				+0.2
2,899,361	-				-1.0
2,899,430	+				-0.4
2,899,430	+				+1.7
2,899,430	+				+0.8
2,899,430	+				+2.4
2,899,430	+				-1.4
2,899,430	+				-0.7
2,899,431	-				-0.4
2,899,431	-				-0.3
2,899,431	-				-0.8
2,899,431	-				+0.2
2,899,431	-				+0.6
2,899,431	-				-0.3
2,899,431	-				-1.4
2,899,486	+				-0.3
2,899,511	+				-1.0
2,899,511	+				+0.1
2,899,511	+				-0.2
2,899,511	+				+0.2
2,899,511	+				-0.3
2,899,511	+				-0.1
2,899,511	+				+1.6
2,899,511	+				-0.5
2,899,511	+				-0.9
2,899,511	+				+0.2
2,899,511	+				+0.2
2,899,511	+				+0.3
2,899,511	+				-0.4
2,899,511	+				+1.4
2,899,511	+				+0.5
2,899,511	+				+0.3
2,899,511	+				-0.7
2,899,511	+				+0.0
2,899,512	-				-1.4
2,899,512	-				-0.6
2,899,512	-				+0.5
2,899,512	-				-0.1
2,899,512	-				+0.9
2,899,512	-				+0.5
2,899,512	-				-0.3
2,899,512	-				-0.3
2,899,512	-				-0.7
2,899,512	-				+0.8
2,899,512	-				+0.5
2,899,512	-				-1.1
2,899,512	-				-0.1
2,899,512	-				-0.6
2,899,512	-				+0.8
2,899,512	-				-0.1
2,899,512	-				-0.1
2,899,512	-				+0.1
2,899,512	-				+0.8
2,899,512	-				+1.6
2,899,727	+		LRK54_RS12980	0.41	-0.1
2,899,727	+		LRK54_RS12980	0.41	-2.5
2,899,727	+		LRK54_RS12980	0.41	+0.6
2,899,727	+		LRK54_RS12980	0.41	+0.5
2,899,727	+		LRK54_RS12980	0.41	-0.4
2,899,727	+		LRK54_RS12980	0.41	+1.2
2,899,727	+		LRK54_RS12980	0.41	+0.2
2,899,727	+		LRK54_RS12980	0.41	+0.1
2,899,727	+		LRK54_RS12980	0.41	-2.1
2,899,727	+		LRK54_RS12980	0.41	+0.3
2,899,728	-		LRK54_RS12980	0.41	-1.6
2,899,728	-		LRK54_RS12980	0.41	+0.1
2,899,728	-		LRK54_RS12980	0.41	-0.5
2,899,728	-		LRK54_RS12980	0.41	-0.9
2,899,728	-		LRK54_RS12980	0.41	+0.2
2,899,728	-		LRK54_RS12980	0.41	-0.7
2,899,728	-		LRK54_RS12980	0.41	+1.7
2,899,766	+		LRK54_RS12980	0.47	-1.6
2,899,766	+		LRK54_RS12980	0.47	+0.8
2,899,766	+		LRK54_RS12980	0.47	+0.4
2,899,970	+		LRK54_RS12980	0.80	+0.0
2,899,970	+		LRK54_RS12980	0.80	-0.4
2,899,970	+		LRK54_RS12980	0.80	+0.8
2,899,970	+		LRK54_RS12980	0.80	+0.7
2,899,970	+		LRK54_RS12980	0.80	+0.3
2,899,970	+		LRK54_RS12980	0.80	+0.4
2,899,970	+		LRK54_RS12980	0.80	+0.8
2,899,970	+		LRK54_RS12980	0.80	-0.6
2,899,970	+		LRK54_RS12980	0.80	+0.5
2,899,970	+		LRK54_RS12980	0.80	+0.7
2,899,970	+		LRK54_RS12980	0.80	+0.0
2,899,971	-		LRK54_RS12980	0.80	-0.0
2,899,971	-		LRK54_RS12980	0.80	+0.1
2,899,971	-		LRK54_RS12980	0.80	+0.7
2,899,971	-		LRK54_RS12980	0.80	+0.1
2,899,971	-		LRK54_RS12980	0.80	+0.7
2,899,971	-		LRK54_RS12980	0.80	+0.8
2,899,971	-		LRK54_RS12980	0.80	-0.6
2,899,971	-		LRK54_RS12980	0.80	+1.6
2,899,971	-		LRK54_RS12980	0.80	+0.3
2,900,072	+				+0.1
2,900,072	+				+0.8
2,900,072	+				-0.8
2,900,072	+				+0.1
2,900,073	-				-0.2
2,900,073	-				+1.7
2,900,073	-				+0.6
2,900,222	+				-1.0
2,900,222	+				+0.4
2,900,222	+				-0.0
2,900,222	+				+0.1
2,900,222	+				+1.1
2,900,222	+				-0.6
2,900,222	+				+1.0
2,900,222	+				+0.2
2,900,222	+				+0.4
2,900,222	+				-1.0
2,900,222	+				+1.5
2,900,222	+				+0.0
2,900,222	+				-0.7
2,900,222	+				+1.0
2,900,222	+				+0.8
2,900,222	+				+0.7
2,900,222	+				+0.2
2,900,222	+				+0.6
2,900,222	+				+0.2
2,900,222	+				-0.5
2,900,222	+				+1.1
2,900,222	+				-0.4
2,900,222	+				+0.3
2,900,222	+				+0.4
2,900,223	-				+0.6
2,900,223	-				-0.7
2,900,223	-				-0.4
2,900,223	-				+1.5
2,900,223	-				-1.0
2,900,223	-				-1.0
2,900,223	-				+0.6
2,900,223	-				+0.1
2,900,223	-				+0.2
2,900,223	-				+1.8
2,900,223	-				+0.8
2,900,223	-				+0.2
2,900,223	-				+2.2
2,900,223	-				+0.5
2,900,223	-				+1.2
2,900,672	+		LRK54_RS12985	0.44	+0.8
2,900,672	+		LRK54_RS12985	0.44	+1.3
2,900,672	+		LRK54_RS12985	0.44	+1.2
2,900,672	+		LRK54_RS12985	0.44	+0.4
2,900,672	+		LRK54_RS12985	0.44	+0.1
2,900,672	+		LRK54_RS12985	0.44	-1.2
2,900,672	+		LRK54_RS12985	0.44	+0.4
2,900,672	+		LRK54_RS12985	0.44	+0.4
2,900,672	+		LRK54_RS12985	0.44	-0.1
2,900,672	+		LRK54_RS12985	0.44	+0.4
2,900,673	-		LRK54_RS12985	0.45	+0.3
2,900,673	-		LRK54_RS12985	0.45	+0.7
2,900,673	-		LRK54_RS12985	0.45	-0.8
2,900,673	-		LRK54_RS12985	0.45	-0.2
2,900,673	-		LRK54_RS12985	0.45	+0.5
2,900,673	-		LRK54_RS12985	0.45	-0.9
2,900,673	-		LRK54_RS12985	0.45	+0.8
2,900,673	-		LRK54_RS12985	0.45	-0.9
2,900,673	-		LRK54_RS12985	0.45	+0.2
2,900,673	-		LRK54_RS12985	0.45	+0.6
2,900,673	-		LRK54_RS12985	0.45	-0.1
2,900,673	-		LRK54_RS12985	0.45	-0.5
2,900,673	-		LRK54_RS12985	0.45	-0.8
2,900,673	-		LRK54_RS12985	0.45	+0.5
2,900,673	-		LRK54_RS12985	0.45	+0.5
2,900,673	-		LRK54_RS12985	0.45	-1.2
2,901,254	+				-1.4
2,901,255	-				+0.1
2,901,255	-				-0.0
2,901,255	-				+0.7
2,901,300	+				-1.0
2,901,300	+				-0.1
2,901,300	+				-0.6
2,901,301	-				-0.4
2,901,301	-				-1.0
2,901,403	-		LRK54_RS12990	0.26	+0.5
2,901,430	-		LRK54_RS12990	0.32	+2.7
2,901,430	-		LRK54_RS12990	0.32	-0.5
2,901,443	+		LRK54_RS12990	0.36	-1.2
2,901,443	+		LRK54_RS12990	0.36	-0.6
2,901,443	+		LRK54_RS12990	0.36	-0.2
2,901,443	+		LRK54_RS12990	0.36	+1.6
2,901,443	+		LRK54_RS12990	0.36	+0.1
2,901,444	-		LRK54_RS12990	0.36	-0.2
2,901,444	-		LRK54_RS12990	0.36	+0.1
2,901,549	+		LRK54_RS12990	0.62	-0.1
2,901,549	+		LRK54_RS12990	0.62	-0.2
2,901,549	+		LRK54_RS12990	0.62	-1.1
2,901,549	+		LRK54_RS12990	0.62	+0.9
2,901,550	-		LRK54_RS12990	0.62	+0.2
2,901,550	-		LRK54_RS12990	0.62	+0.3
2,901,550	-		LRK54_RS12990	0.62	-0.1
2,901,585	+		LRK54_RS12990	0.71	-1.5
2,901,585	+		LRK54_RS12990	0.71	+0.1
2,901,585	+		LRK54_RS12990	0.71	-0.6
2,901,585	+		LRK54_RS12990	0.71	+0.4
2,901,585	+		LRK54_RS12990	0.71	+0.6
2,901,585	+		LRK54_RS12990	0.71	+0.1
2,901,585	+		LRK54_RS12990	0.71	+0.2
2,901,585	+		LRK54_RS12990	0.71	-0.7
2,901,585	+		LRK54_RS12990	0.71	+1.2
2,901,585	+		LRK54_RS12990	0.71	+1.5
2,901,585	+		LRK54_RS12990	0.71	+0.9
2,901,585	+		LRK54_RS12990	0.71	-0.7
2,901,585	+		LRK54_RS12990	0.71	-0.4
2,901,585	+		LRK54_RS12990	0.71	+1.4
2,901,585	+		LRK54_RS12990	0.71	-0.7
2,901,585	+		LRK54_RS12990	0.71	+0.5
2,901,585	+		LRK54_RS12990	0.71	+1.3
2,901,585	+		LRK54_RS12990	0.71	+0.1
2,901,585	+		LRK54_RS12990	0.71	+1.5
2,901,585	+		LRK54_RS12990	0.71	+0.2
2,901,585	+		LRK54_RS12990	0.71	+2.2
2,901,585	+		LRK54_RS12990	0.71	-1.6
2,901,585	+		LRK54_RS12990	0.71	-0.3
2,901,585	+		LRK54_RS12990	0.71	-0.9
2,901,585	+		LRK54_RS12990	0.71	+1.3
2,901,585	+		LRK54_RS12990	0.71	+0.7
2,901,585	+		LRK54_RS12990	0.71	-0.3
2,901,585	+		LRK54_RS12990	0.71	+0.5
2,901,586	-		LRK54_RS12990	0.71	-0.8
2,901,586	-		LRK54_RS12990	0.71	-0.4
2,901,586	-		LRK54_RS12990	0.71	-0.1
2,901,586	-		LRK54_RS12990	0.71	-0.4
2,901,586	-		LRK54_RS12990	0.71	-0.7
2,901,586	-		LRK54_RS12990	0.71	-0.0
2,901,586	-		LRK54_RS12990	0.71	+0.3
2,901,586	-		LRK54_RS12990	0.71	-2.5
2,901,586	-		LRK54_RS12990	0.71	-2.1
2,901,586	-		LRK54_RS12990	0.71	-0.5
2,901,586	-		LRK54_RS12990	0.71	+0.1
2,901,586	-		LRK54_RS12990	0.71	+0.2
2,901,586	-		LRK54_RS12990	0.71	+0.7
2,901,586	-		LRK54_RS12990	0.71	-0.4
2,901,586	-		LRK54_RS12990	0.71	-0.7
2,901,586	-		LRK54_RS12990	0.71	-1.4
2,901,586	-		LRK54_RS12990	0.71	+1.2
2,901,586	-		LRK54_RS12990	0.71	+0.1
2,901,586	-		LRK54_RS12990	0.71	-1.8
2,901,586	-		LRK54_RS12990	0.71	+0.4
2,901,586	-		LRK54_RS12990	0.71	-0.8
2,901,586	-		LRK54_RS12990	0.71	+0.2
2,901,586	-		LRK54_RS12990	0.71	-0.8
2,901,586	-		LRK54_RS12990	0.71	+0.6
2,901,586	-		LRK54_RS12990	0.71	-0.9
2,901,586	-		LRK54_RS12990	0.71	-1.3
2,901,586	-		LRK54_RS12990	0.71	+2.5
2,901,586	-		LRK54_RS12990	0.71	-0.1
2,901,586	-		LRK54_RS12990	0.71	+0.4
2,901,586	-		LRK54_RS12990	0.71	-1.1
2,901,586	-		LRK54_RS12990	0.71	+0.4
2,901,636	+		LRK54_RS12990	0.83	-0.8
2,901,636	+		LRK54_RS12990	0.83	-0.2
2,901,636	+		LRK54_RS12990	0.83	-0.2
2,901,636	+		LRK54_RS12990	0.83	+0.1
2,901,636	+		LRK54_RS12990	0.83	+0.2
2,901,636	+		LRK54_RS12990	0.83	-1.0
2,901,636	+		LRK54_RS12990	0.83	-0.8
2,901,636	+		LRK54_RS12990	0.83	-0.2
2,901,636	+		LRK54_RS12990	0.83	-0.3
2,901,637	-		LRK54_RS12990	0.83	-0.9
2,901,637	-		LRK54_RS12990	0.83	-1.4
2,901,637	-		LRK54_RS12990	0.83	+0.3
2,901,637	-		LRK54_RS12990	0.83	-0.3
2,901,637	-		LRK54_RS12990	0.83	+0.6
2,901,637	-		LRK54_RS12990	0.83	+0.7
2,901,637	-		LRK54_RS12990	0.83	-0.3
2,901,637	-		LRK54_RS12990	0.83	+0.1
2,901,637	-		LRK54_RS12990	0.83	-0.3
2,901,637	-		LRK54_RS12990	0.83	+1.7
2,901,637	-		LRK54_RS12990	0.83	-1.6
2,901,637	-		LRK54_RS12990	0.83	+0.3
2,901,637	-		LRK54_RS12990	0.83	+0.6
2,901,637	-		LRK54_RS12990	0.83	+1.0
2,901,637	-		LRK54_RS12990	0.83	+0.2
2,901,637	-		LRK54_RS12990	0.83	+0.2
2,901,637	-		LRK54_RS12990	0.83	-0.2
2,901,735	+				-0.2
2,901,735	+				+0.2
2,901,735	+				-0.4
2,901,735	+				-0.0
2,901,735	+				-1.3
2,901,735	+				+1.6
2,901,735	+				+0.6
2,901,735	+				+0.0
2,901,735	+				+0.7
2,901,735	+				-0.5
2,901,736	-				-1.1
2,901,736	-				-0.7
2,901,736	-				+0.5
2,901,736	-				-0.6
2,901,736	-				+0.5
2,901,736	-				-0.3
2,901,736	-				+0.6
2,901,736	-				-1.7
2,901,736	-				-1.4
2,901,736	-				-0.9
2,901,736	-				+1.9
2,901,736	-				+0.1
2,901,736	-				+0.5
2,901,736	-				+0.4
2,901,736	-				-1.0
2,901,736	-				-0.4
2,901,736	-				+0.2
2,901,736	-				+0.7
2,901,736	-				-0.2
2,901,793	+				-0.5
2,901,793	+				-0.4
2,901,794	-				-0.4
2,901,794	-				-0.9
2,901,797	+				+0.1
2,901,797	+				-0.1
2,901,797	+				+0.2
2,901,797	+				-0.1
2,901,797	+				-0.8
2,901,797	+				+1.2
2,901,797	+				+0.2
2,901,798	-				-0.7
2,901,798	-				-0.2
2,901,798	-				-0.2
2,901,798	-				+0.9
2,901,798	-				+0.1
2,901,798	-				+0.0
2,901,798	-				+0.1
2,901,839	+		LRK54_RS12995	0.19	-1.2
2,901,839	+		LRK54_RS12995	0.19	-0.4
2,901,840	-		LRK54_RS12995	0.20	-1.9
2,901,936	-		LRK54_RS12995	0.48	-1.7
2,902,176	+				+0.2
2,902,176	+				-0.3
2,902,176	+				-0.9
2,902,177	-				-0.0
2,902,177	-				+0.2