Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12865

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
2,877,225	+				-0.9
2,877,225	+				-0.1
2,877,225	+				-2.6
2,877,225	+				-0.1
2,877,225	+				-1.8
2,877,225	+				-2.9
2,877,225	+				+0.2
2,877,226	-				-2.0
2,877,326	+				-0.6
2,877,353	+				-0.1
2,877,353	+				-1.1
2,877,354	-				-0.8
2,877,354	-				-0.4
2,877,401	+		LRK54_RS12860	0.14	-1.2
2,877,401	+		LRK54_RS12860	0.14	-2.0
2,877,401	+		LRK54_RS12860	0.14	-0.8
2,877,401	+		LRK54_RS12860	0.14	-2.5
2,877,401	+		LRK54_RS12860	0.14	-0.8
2,877,401	+		LRK54_RS12860	0.14	-1.8
2,877,402	-		LRK54_RS12860	0.14	-0.1
2,877,402	-		LRK54_RS12860	0.14	-1.2
2,877,402	-		LRK54_RS12860	0.14	+1.2
2,877,402	-		LRK54_RS12860	0.14	-0.4
2,877,402	-		LRK54_RS12860	0.14	-0.1
2,877,402	-		LRK54_RS12860	0.14	+0.2
2,877,402	-		LRK54_RS12860	0.14	-0.8
2,877,402	-		LRK54_RS12860	0.14	-0.8
2,877,402	-		LRK54_RS12860	0.14	+0.6
2,877,402	-		LRK54_RS12860	0.14	-1.2
2,877,402	-		LRK54_RS12860	0.14	-1.6
2,877,402	-		LRK54_RS12860	0.14	-1.7
2,877,402	-		LRK54_RS12860	0.14	-1.7
2,877,467	+		LRK54_RS12860	0.21	-1.4
2,877,467	+		LRK54_RS12860	0.21	+0.2
2,877,468	-		LRK54_RS12860	0.21	-0.9
2,877,468	-		LRK54_RS12860	0.21	-1.5
2,877,468	-		LRK54_RS12860	0.21	-0.6
2,877,830	+		LRK54_RS12860	0.61	-0.9
2,877,830	+		LRK54_RS12860	0.61	-1.8
2,877,831	-		LRK54_RS12860	0.61	-0.1
2,878,031	-		LRK54_RS12860	0.83	-1.8
2,878,031	-		LRK54_RS12860	0.83	+0.2
2,878,055	+		LRK54_RS12860	0.86	-0.6
2,878,055	+		LRK54_RS12860	0.86	+2.2
2,878,056	+		LRK54_RS12860	0.86	-1.4
2,878,056	-		LRK54_RS12860	0.86	-3.1
2,878,467	+		LRK54_RS12865	0.31	-2.0
2,878,467	+		LRK54_RS12865	0.31	-0.8
2,878,467	+		LRK54_RS12865	0.31	+0.2
2,878,467	+		LRK54_RS12865	0.31	-1.8
2,878,467	+		LRK54_RS12865	0.31	-1.9
2,878,467	+		LRK54_RS12865	0.31	-0.9
2,878,467	+		LRK54_RS12865	0.31	-2.7
2,878,467	+		LRK54_RS12865	0.31	-1.9
2,878,467	+		LRK54_RS12865	0.31	-0.1
2,878,467	+		LRK54_RS12865	0.31	-0.4
2,878,467	+		LRK54_RS12865	0.31	-1.1
2,878,468	-		LRK54_RS12865	0.31	-1.1
2,878,468	-		LRK54_RS12865	0.31	-0.4
2,878,468	-		LRK54_RS12865	0.31	-1.9
2,878,468	-		LRK54_RS12865	0.31	-1.1
2,878,468	-		LRK54_RS12865	0.31	-0.9
2,878,468	-		LRK54_RS12865	0.31	+0.2
2,878,767	+		LRK54_RS12865	0.63	-1.9
2,878,767	+		LRK54_RS12865	0.63	-0.6
2,878,767	+		LRK54_RS12865	0.63	-0.6
2,878,767	+		LRK54_RS12865	0.63	-0.7
2,878,767	+		LRK54_RS12865	0.63	-0.1
2,878,768	-		LRK54_RS12865	0.63	-2.1
2,878,768	-		LRK54_RS12865	0.63	-0.4
2,878,768	-		LRK54_RS12865	0.63	+0.2
2,878,776	+		LRK54_RS12865	0.64	-1.8
2,878,776	+		LRK54_RS12865	0.64	-0.6
2,878,776	+		LRK54_RS12865	0.64	-1.9
2,878,776	+		LRK54_RS12865	0.64	-0.6
2,878,776	+		LRK54_RS12865	0.64	-0.8
2,878,776	+		LRK54_RS12865	0.64	+0.6
2,878,777	-		LRK54_RS12865	0.64	-0.1
2,878,777	-		LRK54_RS12865	0.64	-1.3
2,878,777	-		LRK54_RS12865	0.64	-1.5
2,878,777	-		LRK54_RS12865	0.64	-1.1
2,878,777	-		LRK54_RS12865	0.64	-2.2
2,878,777	-		LRK54_RS12865	0.64	-0.8
2,878,777	-		LRK54_RS12865	0.64	-0.7
2,878,777	-		LRK54_RS12865	0.64	-1.7
2,878,822	+		LRK54_RS12865	0.69	-1.9
2,878,823	-		LRK54_RS12865	0.69	-0.8
2,878,823	-		LRK54_RS12865	0.69	-1.1
2,878,823	-		LRK54_RS12865	0.69	-0.9
2,878,823	-		LRK54_RS12865	0.69	-0.6
2,878,899	+		LRK54_RS12865	0.78	-0.4
2,878,899	+		LRK54_RS12865	0.78	-0.4
2,878,956	+		LRK54_RS12865	0.84	-1.4
2,878,956	+		LRK54_RS12865	0.84	-1.6
2,878,956	+		LRK54_RS12865	0.84	-0.9
2,878,956	+		LRK54_RS12865	0.84	-1.4
2,878,956	+		LRK54_RS12865	0.84	+2.2
2,878,956	+		LRK54_RS12865	0.84	-1.6
2,878,956	+		LRK54_RS12865	0.84	-0.8
2,878,956	+		LRK54_RS12865	0.84	-1.9
2,878,956	+		LRK54_RS12865	0.84	-0.4
2,878,956	+		LRK54_RS12865	0.84	-0.4
2,878,957	-		LRK54_RS12865	0.84	-2.4
2,878,957	-		LRK54_RS12865	0.84	-1.7
2,878,957	-		LRK54_RS12865	0.84	+0.2
2,878,957	-		LRK54_RS12865	0.84	-0.4
2,878,957	-		LRK54_RS12865	0.84	+2.2
2,878,998	+		LRK54_RS12865	0.88	-0.8
2,878,999	-		LRK54_RS12865	0.88	-1.1
2,879,013	+				-1.9
2,879,124	+				-0.8
2,879,124	+				-0.4
2,879,124	+				-0.4
2,879,125	-				-0.6
2,879,125	-				-0.4
2,879,125	-				+0.6
2,879,125	-				+0.6
2,879,231	+				+0.7
2,879,231	+				-0.6
2,879,231	+				+0.3
2,879,232	-				-0.3
2,879,232	-				-0.8
2,879,309	+				-2.7
2,879,310	-				-0.3
2,879,310	-				-0.5
2,879,310	-				-0.5
2,879,310	-				-0.5
2,879,310	-				-1.1
2,879,363	+		LRK54_RS12870	0.19	-0.0
2,879,363	+		LRK54_RS12870	0.19	-0.1
2,879,363	+		LRK54_RS12870	0.19	+0.4
2,879,364	-		LRK54_RS12870	0.19	-0.9
2,879,364	-		LRK54_RS12870	0.19	-0.1
2,879,364	-		LRK54_RS12870	0.19	+0.4
2,879,364	-		LRK54_RS12870	0.19	-0.0
2,879,364	-		LRK54_RS12870	0.19	-0.3
2,879,414	+		LRK54_RS12870	0.35	+1.4
2,879,414	+		LRK54_RS12870	0.35	+0.1
2,879,414	+		LRK54_RS12870	0.35	+0.3
2,879,414	+		LRK54_RS12870	0.35	+0.6
2,879,414	+		LRK54_RS12870	0.35	-1.9
2,879,414	+		LRK54_RS12870	0.35	-0.4
2,879,414	+		LRK54_RS12870	0.35	+0.1
2,879,414	+		LRK54_RS12870	0.35	-0.2
2,879,414	+		LRK54_RS12870	0.35	-0.5
2,879,414	+		LRK54_RS12870	0.35	-1.1
2,879,414	+		LRK54_RS12870	0.35	-1.5
2,879,414	+		LRK54_RS12870	0.35	-0.1
2,879,414	+		LRK54_RS12870	0.35	-0.3
2,879,414	+		LRK54_RS12870	0.35	+0.3
2,879,414	+		LRK54_RS12870	0.35	-1.3
2,879,414	+		LRK54_RS12870	0.35	+0.7
2,879,414	+		LRK54_RS12870	0.35	+0.0
2,879,414	+		LRK54_RS12870	0.35	+1.9
2,879,414	+		LRK54_RS12870	0.35	+0.1
2,879,414	+		LRK54_RS12870	0.35	-0.2
2,879,414	+		LRK54_RS12870	0.35	+0.2
2,879,414	+		LRK54_RS12870	0.35	+1.4
2,879,414	+		LRK54_RS12870	0.35	-2.1
2,879,414	+		LRK54_RS12870	0.35	-0.9
2,879,414	+		LRK54_RS12870	0.35	-0.4
2,879,414	+		LRK54_RS12870	0.35	+1.5
2,879,414	+		LRK54_RS12870	0.35	+1.1
2,879,414	+		LRK54_RS12870	0.35	-0.6
2,879,414	+		LRK54_RS12870	0.35	+0.4
2,879,414	+		LRK54_RS12870	0.35	-2.4
2,879,414	+		LRK54_RS12870	0.35	-0.3
2,879,414	+		LRK54_RS12870	0.35	+0.2
2,879,414	+		LRK54_RS12870	0.35	-0.3
2,879,414	+		LRK54_RS12870	0.35	-0.7
2,879,414	+		LRK54_RS12870	0.35	-1.2
2,879,414	+		LRK54_RS12870	0.35	-2.3
2,879,414	+		LRK54_RS12870	0.35	-2.0
2,879,414	+		LRK54_RS12870	0.35	+0.8
2,879,414	+		LRK54_RS12870	0.35	+1.4
2,879,414	+		LRK54_RS12870	0.35	+0.2
2,879,414	+		LRK54_RS12870	0.35	-0.8
2,879,414	+		LRK54_RS12870	0.35	-0.3
2,879,414	+		LRK54_RS12870	0.35	+0.4
2,879,414	+		LRK54_RS12870	0.35	-1.1
2,879,414	+		LRK54_RS12870	0.35	+0.5
2,879,414	+		LRK54_RS12870	0.35	+0.4
2,879,414	+		LRK54_RS12870	0.35	+0.4
2,879,414	+		LRK54_RS12870	0.35	-0.7
2,879,414	+		LRK54_RS12870	0.35	+1.0
2,879,414	+		LRK54_RS12870	0.35	-0.4
2,879,414	+		LRK54_RS12870	0.35	+1.0
2,879,414	+		LRK54_RS12870	0.35	-0.0
2,879,414	+		LRK54_RS12870	0.35	-0.5
2,879,414	+		LRK54_RS12870	0.35	-1.2
2,879,414	+		LRK54_RS12870	0.35	+0.2
2,879,414	+		LRK54_RS12870	0.35	-1.9
2,879,414	+		LRK54_RS12870	0.35	-0.1
2,879,414	+		LRK54_RS12870	0.35	-0.7
2,879,414	+		LRK54_RS12870	0.35	-0.1
2,879,414	+		LRK54_RS12870	0.35	-0.2
2,879,414	+		LRK54_RS12870	0.35	-1.4
2,879,414	+		LRK54_RS12870	0.35	-0.8
2,879,414	+		LRK54_RS12870	0.35	-0.6
2,879,414	+		LRK54_RS12870	0.35	+0.6
2,879,414	+		LRK54_RS12870	0.35	+0.0
2,879,414	+		LRK54_RS12870	0.35	-0.5
2,879,414	+		LRK54_RS12870	0.35	+0.3
2,879,414	+		LRK54_RS12870	0.35	+0.6
2,879,414	+		LRK54_RS12870	0.35	-0.1
2,879,414	+		LRK54_RS12870	0.35	-0.4
2,879,414	+		LRK54_RS12870	0.35	-1.3
2,879,414	+		LRK54_RS12870	0.35	-1.3
2,879,414	+		LRK54_RS12870	0.35	-0.7
2,879,414	+		LRK54_RS12870	0.35	-0.8
2,879,414	+		LRK54_RS12870	0.35	+0.8
2,879,414	+		LRK54_RS12870	0.35	-1.6
2,879,414	+		LRK54_RS12870	0.35	-1.2
2,879,414	+		LRK54_RS12870	0.35	-1.2
2,879,414	+		LRK54_RS12870	0.35	+0.6
2,879,414	+		LRK54_RS12870	0.35	+0.2
2,879,414	+		LRK54_RS12870	0.35	-0.3
2,879,414	+		LRK54_RS12870	0.35	+1.4
2,879,414	+		LRK54_RS12870	0.35	-0.6
2,879,414	+		LRK54_RS12870	0.35	-1.1
2,879,414	+		LRK54_RS12870	0.35	+0.5
2,879,414	+		LRK54_RS12870	0.35	-0.3
2,879,414	+		LRK54_RS12870	0.35	-0.4
2,879,414	+		LRK54_RS12870	0.35	-0.2
2,879,414	+		LRK54_RS12870	0.35	-1.4
2,879,414	+		LRK54_RS12870	0.35	+1.2
2,879,414	+		LRK54_RS12870	0.35	-0.4
2,879,414	+		LRK54_RS12870	0.35	-0.6
2,879,414	+		LRK54_RS12870	0.35	-1.8
2,879,414	+		LRK54_RS12870	0.35	-1.8
2,879,414	+		LRK54_RS12870	0.35	-0.9
2,879,414	+		LRK54_RS12870	0.35	-0.4
2,879,414	+		LRK54_RS12870	0.35	+0.2
2,879,414	+		LRK54_RS12870	0.35	-0.9
2,879,414	+		LRK54_RS12870	0.35	-0.9
2,879,414	+		LRK54_RS12870	0.35	-1.9
2,879,414	+		LRK54_RS12870	0.35	-1.1
2,879,414	+		LRK54_RS12870	0.35	-0.4
2,879,414	+		LRK54_RS12870	0.35	+1.0
2,879,414	+		LRK54_RS12870	0.35	+0.1
2,879,414	+		LRK54_RS12870	0.35	-0.1
2,879,414	+		LRK54_RS12870	0.35	+0.4
2,879,414	+		LRK54_RS12870	0.35	+0.2
2,879,414	+		LRK54_RS12870	0.35	-2.1
2,879,414	+		LRK54_RS12870	0.35	+0.2
2,879,414	+		LRK54_RS12870	0.35	+0.7
2,879,414	+		LRK54_RS12870	0.35	+2.6
2,879,414	+		LRK54_RS12870	0.35	-0.1
2,879,414	+		LRK54_RS12870	0.35	-0.3
2,879,414	+		LRK54_RS12870	0.35	+1.4
2,879,414	+		LRK54_RS12870	0.35	-1.3
2,879,414	+		LRK54_RS12870	0.35	-0.1
2,879,414	+		LRK54_RS12870	0.35	-0.8
2,879,414	+		LRK54_RS12870	0.35	+0.2
2,879,414	+		LRK54_RS12870	0.35	-0.4
2,879,414	+		LRK54_RS12870	0.35	-0.4
2,879,414	+		LRK54_RS12870	0.35	-0.5
2,879,414	+		LRK54_RS12870	0.35	-0.6
2,879,414	+		LRK54_RS12870	0.35	+0.0
2,879,414	+		LRK54_RS12870	0.35	-0.1
2,879,414	+		LRK54_RS12870	0.35	-0.9
2,879,414	+		LRK54_RS12870	0.35	+0.6
2,879,414	+		LRK54_RS12870	0.35	-0.3
2,879,414	+		LRK54_RS12870	0.35	-0.3
2,879,414	+		LRK54_RS12870	0.35	-1.8
2,879,414	+		LRK54_RS12870	0.35	-0.6
2,879,415	-		LRK54_RS12870	0.35	+0.1
2,879,415	-		LRK54_RS12870	0.35	+0.9
2,879,415	-		LRK54_RS12870	0.35	+0.5
2,879,415	-		LRK54_RS12870	0.35	-0.9
2,879,415	-		LRK54_RS12870	0.35	-0.8
2,879,415	-		LRK54_RS12870	0.35	-0.8
2,879,415	-		LRK54_RS12870	0.35	+0.4
2,879,415	-		LRK54_RS12870	0.35	+0.3
2,879,415	-		LRK54_RS12870	0.35	+0.2
2,879,415	-		LRK54_RS12870	0.35	+0.5
2,879,415	-		LRK54_RS12870	0.35	-1.0
2,879,415	-		LRK54_RS12870	0.35	-0.9
2,879,415	-		LRK54_RS12870	0.35	-0.9
2,879,415	-		LRK54_RS12870	0.35	+0.9
2,879,415	-		LRK54_RS12870	0.35	+0.2
2,879,415	-		LRK54_RS12870	0.35	+1.0
2,879,415	-		LRK54_RS12870	0.35	-0.6
2,879,415	-		LRK54_RS12870	0.35	+1.6
2,879,415	-		LRK54_RS12870	0.35	+0.0
2,879,415	-		LRK54_RS12870	0.35	-0.1
2,879,415	-		LRK54_RS12870	0.35	+0.7
2,879,415	-		LRK54_RS12870	0.35	-0.5
2,879,415	-		LRK54_RS12870	0.35	-0.1
2,879,415	-		LRK54_RS12870	0.35	-0.1
2,879,415	-		LRK54_RS12870	0.35	+2.2
2,879,415	-		LRK54_RS12870	0.35	+0.5
2,879,415	-		LRK54_RS12870	0.35	-0.6
2,879,415	-		LRK54_RS12870	0.35	-0.4
2,879,415	-		LRK54_RS12870	0.35	-0.1
2,879,415	-		LRK54_RS12870	0.35	+0.4
2,879,415	-		LRK54_RS12870	0.35	-1.4
2,879,415	-		LRK54_RS12870	0.35	-0.9
2,879,415	-		LRK54_RS12870	0.35	-0.5
2,879,415	-		LRK54_RS12870	0.35	-0.4
2,879,415	-		LRK54_RS12870	0.35	-0.4
2,879,415	-		LRK54_RS12870	0.35	+0.4
2,879,415	-		LRK54_RS12870	0.35	+1.2
2,879,415	-		LRK54_RS12870	0.35	-1.2
2,879,415	-		LRK54_RS12870	0.35	-0.6
2,879,415	-		LRK54_RS12870	0.35	-0.4
2,879,415	-		LRK54_RS12870	0.35	-0.6
2,879,415	-		LRK54_RS12870	0.35	-1.2
2,879,415	-		LRK54_RS12870	0.35	+0.2
2,879,415	-		LRK54_RS12870	0.35	-0.4
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