Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12850

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
2,875,844	+		LRK54_RS12845	0.67	+0.2
2,875,844	+		LRK54_RS12845	0.67	-0.4
2,876,045	+		LRK54_RS12845	0.79	+0.0
2,876,045	+		LRK54_RS12845	0.79	+0.6
2,876,045	+		LRK54_RS12845	0.79	+0.5
2,876,046	-		LRK54_RS12845	0.79	+0.5
2,876,339	+				+0.4
2,876,339	+				+0.1
2,876,339	+				-0.6
2,876,339	+				+0.1
2,876,339	+				+0.6
2,876,340	-				-0.6
2,876,340	-				-1.0
2,876,340	-				-0.7
2,876,340	-				-0.3
2,876,340	-				+0.6
2,876,340	-				-0.9
2,876,340	-				-0.5
2,876,340	-				+0.8
2,876,450	+				+1.6
2,876,450	+				+0.5
2,876,450	+				+0.1
2,876,450	+				+0.6
2,876,450	+				-0.4
2,876,450	+				+1.2
2,876,451	-				+0.1
2,876,471	+				+0.9
2,876,471	+				+0.2
2,876,471	+				-0.8
2,876,471	+				-0.0
2,876,471	+				+0.3
2,876,471	+				+0.4
2,876,472	-				-0.1
2,876,472	-				+2.8
2,876,472	-				-0.4
2,876,472	-				-0.6
2,876,472	-				-0.3
2,876,770	+		LRK54_RS12850	0.74	+0.3
2,876,770	+		LRK54_RS12850	0.74	-1.0
2,876,770	+		LRK54_RS12850	0.74	+2.2
2,876,770	+		LRK54_RS12850	0.74	+2.2
2,876,770	+		LRK54_RS12850	0.74	-0.6
2,876,771	-		LRK54_RS12850	0.75	+0.2
2,876,771	-		LRK54_RS12850	0.75	+0.1
2,876,771	-		LRK54_RS12850	0.75	+0.1
2,876,771	-		LRK54_RS12850	0.75	+0.9
2,876,771	-		LRK54_RS12850	0.75	-0.8
2,876,771	-		LRK54_RS12850	0.75	+1.2
2,876,771	-		LRK54_RS12850	0.75	-0.0
2,876,771	-		LRK54_RS12850	0.75	+1.2
2,876,771	-		LRK54_RS12850	0.75	+1.1
2,876,771	-		LRK54_RS12850	0.75	+2.2
2,876,926	+		LRK54_RS12855	0.20	-0.4
2,876,926	+		LRK54_RS12855	0.20	-1.4
2,876,926	+		LRK54_RS12855	0.20	-2.4
2,876,926	+		LRK54_RS12855	0.20	-0.1
2,876,926	+		LRK54_RS12855	0.20	-0.9
2,876,926	+		LRK54_RS12855	0.20	-1.6
2,876,927	-		LRK54_RS12855	0.20	-0.1
2,876,927	-		LRK54_RS12855	0.20	-1.2
2,876,934	+		LRK54_RS12855	0.22	-2.2
2,876,934	+		LRK54_RS12855	0.22	-3.2
2,876,934	+		LRK54_RS12855	0.22	-2.1
2,876,982	+		LRK54_RS12855	0.34	+0.2
2,876,983	-		LRK54_RS12855	0.35	-1.6
2,877,031	+		LRK54_RS12855	0.47	-2.2
2,877,031	+		LRK54_RS12855	0.47	-0.4
2,877,031	+		LRK54_RS12855	0.47	-0.8
2,877,031	+		LRK54_RS12855	0.47	-0.1
2,877,031	+				-0.1
2,877,031	+		LRK54_RS12855	0.47	-1.5
2,877,032	-		LRK54_RS12855	0.47	-1.4
2,877,032	-		LRK54_RS12855	0.47	-0.1
2,877,051	+		LRK54_RS12855	0.52	-1.5
2,877,051	+		LRK54_RS12855	0.52	-2.1
2,877,225	+				-0.9
2,877,225	+				-0.1
2,877,225	+				-2.6
2,877,225	+				-0.1
2,877,225	+				-1.8
2,877,225	+				-2.9
2,877,225	+				+0.2
2,877,226	-				-2.0
2,877,326	+				-0.6
2,877,353	+				-0.1
2,877,353	+				-1.1
2,877,354	-				-0.8
2,877,354	-				-0.4
2,877,401	+		LRK54_RS12860	0.14	-1.2
2,877,401	+		LRK54_RS12860	0.14	-2.0
2,877,401	+		LRK54_RS12860	0.14	-0.8
2,877,401	+		LRK54_RS12860	0.14	-2.5
2,877,401	+		LRK54_RS12860	0.14	-0.8
2,877,401	+		LRK54_RS12860	0.14	-1.8
2,877,402	-		LRK54_RS12860	0.14	-0.1
2,877,402	-		LRK54_RS12860	0.14	-1.2
2,877,402	-		LRK54_RS12860	0.14	+1.2
2,877,402	-		LRK54_RS12860	0.14	-0.4
2,877,402	-		LRK54_RS12860	0.14	-0.1
2,877,402	-		LRK54_RS12860	0.14	+0.2
2,877,402	-		LRK54_RS12860	0.14	-0.8
2,877,402	-		LRK54_RS12860	0.14	-0.8
2,877,402	-		LRK54_RS12860	0.14	+0.6
2,877,402	-		LRK54_RS12860	0.14	-1.2
2,877,402	-		LRK54_RS12860	0.14	-1.6
2,877,402	-		LRK54_RS12860	0.14	-1.7
2,877,402	-		LRK54_RS12860	0.14	-1.7
2,877,467	+		LRK54_RS12860	0.21	-1.4
2,877,467	+		LRK54_RS12860	0.21	+0.2
2,877,468	-		LRK54_RS12860	0.21	-0.9
2,877,468	-		LRK54_RS12860	0.21	-1.5
2,877,468	-		LRK54_RS12860	0.21	-0.6
2,877,830	+		LRK54_RS12860	0.61	-0.9
2,877,830	+		LRK54_RS12860	0.61	-1.8
2,877,831	-		LRK54_RS12860	0.61	-0.1