Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12670

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
2,831,248	-		LRK54_RS12665	0.54	+0.3
2,831,249	+		LRK54_RS12665	0.54	+0.7
2,831,249	+		LRK54_RS12665	0.54	-0.7
2,831,249	+		LRK54_RS12665	0.54	-1.3
2,831,249	+		LRK54_RS12665	0.54	-0.7
2,831,249	+		LRK54_RS12665	0.54	-1.3
2,831,249	+		LRK54_RS12665	0.54	-0.6
2,831,249	+		LRK54_RS12665	0.54	-0.3
2,831,249	+		LRK54_RS12665	0.54	-0.1
2,831,250	-		LRK54_RS12665	0.54	+0.7
2,831,250	-		LRK54_RS12665	0.54	-1.1
2,831,250	-		LRK54_RS12665	0.54	-0.7
2,831,250	-		LRK54_RS12665	0.54	-0.6
2,831,250	-		LRK54_RS12665	0.54	+0.5
2,831,250	-		LRK54_RS12665	0.54	-0.1
2,831,250	-		LRK54_RS12665	0.54	+0.7
2,831,250	-		LRK54_RS12665	0.54	+2.3
2,831,345	+		LRK54_RS12665	0.60	+0.4
2,831,345	+		LRK54_RS12665	0.60	+0.8
2,831,345	+		LRK54_RS12665	0.60	-0.1
2,831,345	+		LRK54_RS12665	0.60	+1.0
2,831,346	-		LRK54_RS12665	0.60	+0.7
2,831,346	-		LRK54_RS12665	0.60	-0.4
2,831,399	+		LRK54_RS12665	0.63	-2.1
2,831,400	-		LRK54_RS12665	0.63	-0.3
2,831,400	-		LRK54_RS12665	0.63	-0.3
2,831,400	-		LRK54_RS12665	0.63	-2.6
2,831,418	+		LRK54_RS12665	0.64	+0.0
2,831,423	+		LRK54_RS12665	0.64	-0.1
2,831,423	+		LRK54_RS12665	0.64	-1.1
2,831,423	+		LRK54_RS12665	0.64	-0.9
2,831,423	+		LRK54_RS12665	0.64	-0.1
2,831,424	-		LRK54_RS12665	0.64	+1.3
2,831,424	-		LRK54_RS12665	0.64	+0.7
2,831,625	-		LRK54_RS12665	0.75	+0.2
2,831,822	+		LRK54_RS12665	0.87	-0.9
2,831,823	-		LRK54_RS12665	0.87	-0.6
2,831,823	-		LRK54_RS12665	0.87	-0.5
2,831,823	-		LRK54_RS12665	0.87	-0.3
2,831,823	-		LRK54_RS12665	0.87	-0.5
2,831,825	+		LRK54_RS12665	0.87	-1.3
2,831,826	-		LRK54_RS12665	0.87	-2.1
2,831,826	-		LRK54_RS12665	0.87	-0.9
2,831,826	-		LRK54_RS12665	0.87	-0.2
2,831,826	-		LRK54_RS12665	0.87	-1.2
2,831,873	+		LRK54_RS12665	0.89	-0.7
2,831,873	+		LRK54_RS12665	0.89	+0.7
2,831,873	+		LRK54_RS12665	0.89	-1.7
2,831,873	+		LRK54_RS12665	0.89	+0.3
2,831,873	+		LRK54_RS12665	0.89	-0.9
2,831,873	+		LRK54_RS12665	0.89	-0.7
2,831,873	+		LRK54_RS12665	0.89	+0.9
2,831,873	+		LRK54_RS12665	0.89	+0.4
2,831,873	+		LRK54_RS12665	0.89	+1.3
2,831,873	+		LRK54_RS12665	0.89	-0.2
2,831,873	+		LRK54_RS12665	0.89	-0.5
2,831,873	+		LRK54_RS12665	0.89	+0.7
2,831,873	+		LRK54_RS12665	0.89	-0.9
2,831,873	+		LRK54_RS12665	0.89	-1.7
2,831,874	-		LRK54_RS12665	0.89	+0.7
2,831,874	-		LRK54_RS12665	0.89	-0.7
2,831,874	-		LRK54_RS12665	0.89	-0.8
2,831,874	-		LRK54_RS12665	0.89	-1.3
2,831,874	-		LRK54_RS12665	0.89	-0.3
2,831,874	-		LRK54_RS12665	0.89	-0.1
2,831,915	+				-0.1
2,831,915	+				-0.8
2,831,915	+				-0.6
2,831,916	-				-0.6
2,831,916	-				-0.3
2,831,916	-				-0.5
2,831,916	-				-1.0
2,831,916	-				+2.1
2,832,107	+				-0.9
2,832,107	+				-0.8
2,832,108	-				-0.6
2,832,108	-				-0.6
2,832,108	-				-0.2
2,832,278	-				-0.9
2,832,278	-				-1.1
2,832,278	-				-1.1
2,832,278	-				-0.2
2,832,328	+				+0.3
2,832,329	-				+0.3
2,832,329	-				-0.8
2,832,341	-				-0.2
2,832,402	+				-0.7
2,832,557	-		LRK54_RS12670	0.13	-1.1
2,832,570	+		LRK54_RS12670	0.13	-1.2
2,832,583	+		LRK54_RS12670	0.14	-1.4
2,832,583	+		LRK54_RS12670	0.14	-0.1
2,832,664	+		LRK54_RS12670	0.17	-0.6
2,832,664	+		LRK54_RS12670	0.17	-1.2
2,832,665	-		LRK54_RS12670	0.17	-0.1
2,832,665	-		LRK54_RS12670	0.17	-1.7
2,832,871	+		LRK54_RS12670	0.25	-0.3
2,832,872	-		LRK54_RS12670	0.25	-1.2
2,832,872	-		LRK54_RS12670	0.25	+0.1
2,832,872	-		LRK54_RS12670	0.25	-1.7
2,832,872	-		LRK54_RS12670	0.25	+0.7
2,832,922	+		LRK54_RS12670	0.27	-1.7
2,832,922	+		LRK54_RS12670	0.27	-0.6
2,832,923	-		LRK54_RS12670	0.27	-0.3
2,832,923	-		LRK54_RS12670	0.27	-3.1
2,832,923	-		LRK54_RS12670	0.27	+0.3
2,833,105	+		LRK54_RS12670	0.34	-1.3
2,833,105	+		LRK54_RS12670	0.34	-0.6
2,833,106	-		LRK54_RS12670	0.34	+0.3
2,833,106	-		LRK54_RS12670	0.34	-2.1
2,833,106	-		LRK54_RS12670	0.34	-0.9
2,833,238	-		LRK54_RS12670	0.39	+0.3
2,833,260	+		LRK54_RS12670	0.40	+0.1
2,833,260	+		LRK54_RS12670	0.40	-1.3
2,833,261	-		LRK54_RS12670	0.40	-0.6
2,833,261	-		LRK54_RS12670	0.40	-1.2
2,833,261	-		LRK54_RS12670	0.40	-1.1
2,833,261	-		LRK54_RS12670	0.40	+1.3
2,833,372	+		LRK54_RS12670	0.44	-0.3
2,833,373	-		LRK54_RS12670	0.44	-0.1
2,833,373	-		LRK54_RS12670	0.44	-0.7
2,833,501	+		LRK54_RS12670	0.49	-2.5
2,833,501	+		LRK54_RS12670	0.49	-0.1
2,833,501	+		LRK54_RS12670	0.49	-0.6
2,833,501	+		LRK54_RS12670	0.49	+0.3
2,833,502	-		LRK54_RS12670	0.49	-1.2
2,833,502	-		LRK54_RS12670	0.49	-1.4
2,833,502	-				-0.1
2,833,502	-		LRK54_RS12670	0.49	-1.1
2,833,502	-		LRK54_RS12670	0.49	-1.1
2,833,693	+		LRK54_RS12670	0.56	-2.4
2,833,693	+		LRK54_RS12670	0.56	+0.3
2,833,694	-		LRK54_RS12670	0.56	+1.3
2,833,694	-		LRK54_RS12670	0.56	-1.1
2,833,694	-		LRK54_RS12670	0.56	-0.9
2,833,694	-		LRK54_RS12670	0.56	-1.1
2,833,930	+		LRK54_RS12670	0.65	-0.7
2,833,930	+		LRK54_RS12670	0.65	+0.3
2,833,930	+		LRK54_RS12670	0.65	-0.9
2,833,931	-		LRK54_RS12670	0.65	-0.9
2,833,931	-		LRK54_RS12670	0.65	+0.3
2,833,993	+		LRK54_RS12670	0.68	-0.6
2,833,993	+		LRK54_RS12670	0.68	-1.3
2,833,993	+		LRK54_RS12670	0.68	-0.1
2,833,993	+		LRK54_RS12670	0.68	-1.6
2,833,993	+		LRK54_RS12670	0.68	-0.1
2,833,993	+		LRK54_RS12670	0.68	-1.4
2,833,993	+		LRK54_RS12670	0.68	-1.1
2,833,993	+		LRK54_RS12670	0.68	-2.1
2,833,993	+		LRK54_RS12670	0.68	-1.1
2,833,993	+		LRK54_RS12670	0.68	-0.6
2,833,993	+		LRK54_RS12670	0.68	-1.1
2,833,994	-		LRK54_RS12670	0.68	-0.3
2,833,994	-		LRK54_RS12670	0.68	-1.7
2,833,994	-		LRK54_RS12670	0.68	-0.1
2,833,994	-		LRK54_RS12670	0.68	-0.9
2,833,996	+		LRK54_RS12670	0.68	-0.9
2,833,996	+		LRK54_RS12670	0.68	-0.3
2,833,996	+		LRK54_RS12670	0.68	+2.3
2,833,996	+		LRK54_RS12670	0.68	-0.1
2,833,997	-		LRK54_RS12670	0.68	-2.2
2,833,997	-		LRK54_RS12670	0.68	+0.6
2,833,997	-		LRK54_RS12670	0.68	+1.3
2,833,997	-		LRK54_RS12670	0.68	+0.7
2,834,074	+		LRK54_RS12670	0.71	-0.9
2,834,074	+		LRK54_RS12670	0.71	-0.6
2,834,075	-		LRK54_RS12670	0.71	-0.4
2,834,075	-		LRK54_RS12670	0.71	-0.3
2,834,159	-		LRK54_RS12670	0.74	-1.4
2,834,281	+		LRK54_RS12670	0.79	-2.1
2,834,296	+		LRK54_RS12670	0.79	-2.0
2,834,296	+		LRK54_RS12670	0.79	-1.4
2,834,296	+		LRK54_RS12670	0.79	-0.9
2,834,296	+		LRK54_RS12670	0.79	-0.7
2,834,296	+		LRK54_RS12670	0.79	-0.3
2,834,296	+		LRK54_RS12670	0.79	-1.2
2,834,296	+		LRK54_RS12670	0.79	-0.3
2,834,296	+		LRK54_RS12670	0.79	-0.9
2,834,296	+		LRK54_RS12670	0.79	+0.3
2,834,297	-		LRK54_RS12670	0.79	-1.1
2,834,297	-		LRK54_RS12670	0.79	+1.4
2,834,297	-		LRK54_RS12670	0.79	-1.9
2,834,297	-		LRK54_RS12670	0.79	-0.9
2,834,297	-		LRK54_RS12670	0.79	-2.7
2,834,297	-		LRK54_RS12670	0.79	-0.3
2,834,297	-		LRK54_RS12670	0.79	-1.8
2,834,297	-		LRK54_RS12670	0.79	-0.6
2,834,297	-		LRK54_RS12670	0.79	-1.2
2,834,297	-		LRK54_RS12670	0.79	-0.3
2,834,297	-		LRK54_RS12670	0.79	-0.3
2,834,353	+		LRK54_RS12670	0.81	-1.7
2,834,353	+		LRK54_RS12670	0.81	+2.3
2,834,353	+		LRK54_RS12670	0.81	-0.1
2,834,354	-		LRK54_RS12670	0.81	+1.3
2,834,354	-		LRK54_RS12670	0.81	+0.3
2,834,354	-		LRK54_RS12670	0.81	+0.1
2,834,354	-		LRK54_RS12670	0.81	-1.7
2,834,354	-		LRK54_RS12670	0.81	-1.2
2,834,354	-		LRK54_RS12670	0.81	-2.0
2,834,434	+		LRK54_RS12670	0.84	-0.1
2,834,545	+		LRK54_RS12670	0.89	-1.6
2,834,546	-		LRK54_RS12670	0.89	-1.7
2,834,572	+		LRK54_RS12670	0.90	-0.8
2,834,572	+		LRK54_RS12670	0.90	-0.1
2,834,572	+		LRK54_RS12670	0.90	-0.3
2,834,572	+		LRK54_RS12670	0.90	-1.9
2,834,572	+		LRK54_RS12670	0.90	-0.1
2,834,572	+		LRK54_RS12670	0.90	-2.3
2,834,572	+		LRK54_RS12670	0.90	-0.1
2,834,572	+		LRK54_RS12670	0.90	-0.3
2,834,572	+		LRK54_RS12670	0.90	-0.7
2,834,572	+		LRK54_RS12670	0.90	-2.1
2,834,572	+		LRK54_RS12670	0.90	-0.9
2,834,572	+		LRK54_RS12670	0.90	-0.3
2,834,573	-		LRK54_RS12670	0.90	-0.3
2,834,573	-		LRK54_RS12670	0.90	+0.3
2,834,573	-		LRK54_RS12670	0.90	-1.7
2,834,576	+		LRK54_RS12670	0.90	+1.3
2,834,576	+		LRK54_RS12670	0.90	-0.7
2,834,577	-		LRK54_RS12670	0.90	+0.3
2,834,577	-		LRK54_RS12670	0.90	-0.4
2,834,577	-		LRK54_RS12670	0.90	-2.0
2,834,641	+				-0.1
2,834,642	-				-1.7
2,834,665	+				+0.1
2,834,666	-				-1.6
2,834,731	+				-1.7
2,834,731	+				+0.4
2,834,732	-				-0.9
2,834,732	-				+0.3
2,834,876	-				-1.0
2,834,876	-				+0.1
2,834,883	+				-0.1
2,834,883	+				+1.3
2,834,883	+				-2.8
2,834,883	+				-0.0
2,834,883	+				-1.0
2,834,884	-				+0.8
2,834,884	-				-1.4
2,834,884	-				+2.3
2,834,884	-				-1.9
2,834,884	-				+0.2
2,834,884	-				-1.2
2,834,917	+				+0.3
2,834,917	+				-0.5
2,834,917	+				+0.4
2,834,917	+				-1.4
2,834,917	+				+0.6
2,834,917	+				+0.7
2,834,918	-				+2.3
2,834,918	-				-0.1
2,834,918	-				-0.3
2,834,918	-				-0.1
2,834,918	-				-1.9
2,834,918	-				+0.3
2,834,918	-				-0.1
2,835,172	+		LRK54_RS12675	0.35	-0.8
2,835,172	+		LRK54_RS12675	0.35	-0.8
2,835,172	+		LRK54_RS12675	0.35	+1.3
2,835,172	+		LRK54_RS12675	0.35	-0.5
2,835,172	+		LRK54_RS12675	0.35	-0.2
2,835,172	+		LRK54_RS12675	0.35	+0.4
2,835,172	+		LRK54_RS12675	0.35	-0.6
2,835,172	+		LRK54_RS12675	0.35	-0.8
2,835,172	+		LRK54_RS12675	0.35	-1.1
2,835,173	-		LRK54_RS12675	0.35	-1.6
2,835,173	-		LRK54_RS12675	0.35	-1.1
2,835,173	-		LRK54_RS12675	0.35	-0.4
2,835,173	-		LRK54_RS12675	0.35	+1.1
2,835,173	-		LRK54_RS12675	0.35	+0.4
2,835,201	+		LRK54_RS12675	0.42	-0.4
2,835,202	-		LRK54_RS12675	0.42	-0.4
2,835,202	-		LRK54_RS12675	0.42	+1.4
2,835,202	-		LRK54_RS12675	0.42	+0.5
2,835,202	-		LRK54_RS12675	0.42	-0.7
2,835,202	-		LRK54_RS12675	0.42	+1.4
2,835,202	-		LRK54_RS12675	0.42	-0.9
2,835,250	-		LRK54_RS12675	0.54	+0.0
2,835,250	-		LRK54_RS12675	0.54	+1.5
2,835,263	+		LRK54_RS12675	0.57	-0.4
2,835,339	+		LRK54_RS12675	0.75	-0.4
2,835,339	+		LRK54_RS12675	0.75	-0.4
2,835,339	+		LRK54_RS12675	0.75	+0.5
2,835,339	+		LRK54_RS12675	0.75	+0.4
2,835,339	+		LRK54_RS12675	0.75	-0.0
2,835,339	+		LRK54_RS12675	0.75	+0.9
2,835,340	-		LRK54_RS12675	0.76	-1.7
2,835,402	+				-0.1
2,835,402	+				-0.2
2,835,402	+				-0.6
2,835,402	+				+0.5
2,835,402	+				+0.8
2,835,403	-				-0.0
2,835,403	-				-0.5
2,835,403	-				+0.2
2,835,403	-				+0.4
2,835,409	+				+0.8
2,835,440	+				-0.7
2,835,441	-				-0.3
2,835,441	-				+1.3
2,835,459	+				-0.9
2,835,460	-				-1.3
2,835,460	-				+0.0
2,835,463	+				-0.8
2,835,463	+				-0.7
2,835,477	-				+0.6
2,835,477	-				-0.0
2,835,477	-				-1.9
2,835,477	-				-0.3
2,835,477	-				-0.8
2,835,477	-				-0.7
2,835,478	+				-0.3
2,835,478	+				+2.8
2,835,479	-				-0.3
2,835,479	-				-1.0
2,835,479	-				-0.1
2,835,479	-				+1.3
2,835,479	-				+2.3
2,835,479	-				+0.0
2,835,479	-				+0.1
2,835,479	-				-2.6
2,835,501	+				+0.3
2,835,502	-				-0.7
2,835,502	-				-0.6
2,835,502	-				-0.0
2,835,536	+				+0.9
2,835,536	+				+0.1
2,835,536	+				-2.1
2,835,536	+				-0.5
2,835,536	+				+0.9
2,835,537	-				+0.1
2,835,537	-				-2.3
2,835,537	-				-0.2
2,835,537	-				-0.6
2,835,537	-				-0.2
2,835,537	-				-0.7
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2,835,537	-				-0.7
2,835,537	-				-0.4
2,835,537	-				+1.0
2,835,537	-				-1.4
2,835,547	-				-2.0
2,835,547	-				-1.1
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2,835,701	+		LRK54_RS12680	0.11	-0.5
2,835,701	+		LRK54_RS12680	0.11	+0.6
2,835,701	+		LRK54_RS12680	0.11	+0.7
2,835,701	+		LRK54_RS12680	0.11	-0.3
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2,835,798	+		LRK54_RS12680	0.19	-0.1
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2,835,798	+		LRK54_RS12680	0.19	+0.3
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2,835,799	-		LRK54_RS12680	0.19	+0.0