Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12520

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
2,793,773	+		LRK54_RS12515	0.38	-1.5
2,793,773	+		LRK54_RS12515	0.38	+0.6
2,793,773	+		LRK54_RS12515	0.38	+1.2
2,793,773	+		LRK54_RS12515	0.38	+0.1
2,793,773	+		LRK54_RS12515	0.38	+0.7
2,793,773	+		LRK54_RS12515	0.38	+0.1
2,793,773	+		LRK54_RS12515	0.38	-0.2
2,793,773	+		LRK54_RS12515	0.38	+0.3
2,793,773	+		LRK54_RS12515	0.38	-0.1
2,793,773	+		LRK54_RS12515	0.38	+0.8
2,793,773	+		LRK54_RS12515	0.38	-0.7
2,793,773	+		LRK54_RS12515	0.38	-0.0
2,793,773	+		LRK54_RS12515	0.38	+0.1
2,793,773	+		LRK54_RS12515	0.38	+1.7
2,793,773	+		LRK54_RS12515	0.38	+0.5
2,793,773	+		LRK54_RS12515	0.38	+1.7
2,793,773	+		LRK54_RS12515	0.38	-0.1
2,793,773	+		LRK54_RS12515	0.38	+0.7
2,793,773	+		LRK54_RS12515	0.38	+1.1
2,793,773	+		LRK54_RS12515	0.38	-0.1
2,793,773	+		LRK54_RS12515	0.38	-0.6
2,793,773	+		LRK54_RS12515	0.38	+0.9
2,793,773	+		LRK54_RS12515	0.38	-0.6
2,793,773	+		LRK54_RS12515	0.38	+0.3
2,793,773	+		LRK54_RS12515	0.38	+0.1
2,793,773	+		LRK54_RS12515	0.38	+2.2
2,793,773	+		LRK54_RS12515	0.38	+0.5
2,793,773	+		LRK54_RS12515	0.38	+2.0
2,793,773	+		LRK54_RS12515	0.38	-0.8
2,793,773	+		LRK54_RS12515	0.38	-1.8
2,793,773	+		LRK54_RS12515	0.38	+1.2
2,793,773	+		LRK54_RS12515	0.38	+0.5
2,793,773	+		LRK54_RS12515	0.38	-0.3
2,793,773	+		LRK54_RS12515	0.38	+1.0
2,793,773	+		LRK54_RS12515	0.38	-0.7
2,793,773	+		LRK54_RS12515	0.38	-0.0
2,793,773	+		LRK54_RS12515	0.38	-0.5
2,793,773	+		LRK54_RS12515	0.38	+1.4
2,793,773	+		LRK54_RS12515	0.38	+0.5
2,793,773	+		LRK54_RS12515	0.38	-0.5
2,793,773	+		LRK54_RS12515	0.38	+0.4
2,793,774	-		LRK54_RS12515	0.38	-1.6
2,793,774	-		LRK54_RS12515	0.38	+2.7
2,793,774	-		LRK54_RS12515	0.38	+0.1
2,793,774	-		LRK54_RS12515	0.38	+0.4
2,793,774	-		LRK54_RS12515	0.38	+1.9
2,793,774	-		LRK54_RS12515	0.38	+1.7
2,793,774	-		LRK54_RS12515	0.38	+0.4
2,793,774	-		LRK54_RS12515	0.38	+0.5
2,793,774	-		LRK54_RS12515	0.38	+0.8
2,793,774	-		LRK54_RS12515	0.38	+0.3
2,793,774	-		LRK54_RS12515	0.38	+1.0
2,793,774	-		LRK54_RS12515	0.38	+1.2
2,793,774	-		LRK54_RS12515	0.38	+0.5
2,793,774	-		LRK54_RS12515	0.38	+0.2
2,793,774	-		LRK54_RS12515	0.38	+0.4
2,793,774	-		LRK54_RS12515	0.38	+3.2
2,793,774	-		LRK54_RS12515	0.38	+0.1
2,793,774	-		LRK54_RS12515	0.38	+0.6
2,793,774	-		LRK54_RS12515	0.38	-0.0
2,793,774	-		LRK54_RS12515	0.38	+0.6
2,793,774	-		LRK54_RS12515	0.38	+2.7
2,793,774	-		LRK54_RS12515	0.38	+0.5
2,793,774	-		LRK54_RS12515	0.38	+0.4
2,793,774	-		LRK54_RS12515	0.38	+0.2
2,793,774	-		LRK54_RS12515	0.38	-1.2
2,793,774	-		LRK54_RS12515	0.38	+1.2
2,793,774	-		LRK54_RS12515	0.38	+2.2
2,793,774	-		LRK54_RS12515	0.38	+1.4
2,793,774	-		LRK54_RS12515	0.38	+0.4
2,793,774	-		LRK54_RS12515	0.38	+0.3
2,793,774	-		LRK54_RS12515	0.38	+0.2
2,793,774	-		LRK54_RS12515	0.38	-0.3
2,793,946	+		LRK54_RS12515	0.54	+2.2
2,793,946	+		LRK54_RS12515	0.54	+0.5
2,793,946	+		LRK54_RS12515	0.54	+0.5
2,793,946	+		LRK54_RS12515	0.54	-0.3
2,793,946	+		LRK54_RS12515	0.54	+1.2
2,793,946	+		LRK54_RS12515	0.54	-0.9
2,793,947	-		LRK54_RS12515	0.54	-0.1
2,793,947	-		LRK54_RS12515	0.54	+1.4
2,793,947	-		LRK54_RS12515	0.54	+0.7
2,793,947	-		LRK54_RS12515	0.54	+1.0
2,794,006	+		LRK54_RS12515	0.59	+0.7
2,794,006	+		LRK54_RS12515	0.59	+0.1
2,794,006	+		LRK54_RS12515	0.59	+0.5
2,794,006	+		LRK54_RS12515	0.59	-0.1
2,794,006	+		LRK54_RS12515	0.59	+1.7
2,794,006	+		LRK54_RS12515	0.59	+0.2
2,794,007	-		LRK54_RS12515	0.59	-0.5
2,794,007	-		LRK54_RS12515	0.59	+1.5
2,794,007	-		LRK54_RS12515	0.59	+0.7
2,794,007	-		LRK54_RS12515	0.59	+1.2
2,794,007	-		LRK54_RS12515	0.59	+0.2
2,794,007	-		LRK54_RS12515	0.59	+0.7
2,794,007	-		LRK54_RS12515	0.59	+0.2
2,794,007	-		LRK54_RS12515	0.59	+1.4
2,794,007	-		LRK54_RS12515	0.59	+0.1
2,794,007	-		LRK54_RS12515	0.59	+1.2
2,794,007	-		LRK54_RS12515	0.59	+1.8
2,794,007	-		LRK54_RS12515	0.59	-0.4
2,794,066	+		LRK54_RS12515	0.64	-0.1
2,794,066	+		LRK54_RS12515	0.64	+0.3
2,794,066	+		LRK54_RS12515	0.64	-0.9
2,794,066	+		LRK54_RS12515	0.64	+0.5
2,794,066	+		LRK54_RS12515	0.64	+2.0
2,794,066	+		LRK54_RS12515	0.64	+0.3
2,794,066	+		LRK54_RS12515	0.64	+0.8
2,794,066	+		LRK54_RS12515	0.64	+0.2
2,794,066	+		LRK54_RS12515	0.64	+1.7
2,794,066	+		LRK54_RS12515	0.64	+0.3
2,794,066	+		LRK54_RS12515	0.64	-0.8
2,794,066	+		LRK54_RS12515	0.64	+1.0
2,794,066	+		LRK54_RS12515	0.64	+0.7
2,794,066	+		LRK54_RS12515	0.64	+0.6
2,794,066	+		LRK54_RS12515	0.64	+0.4
2,794,066	+		LRK54_RS12515	0.64	+0.7
2,794,067	-		LRK54_RS12515	0.64	+0.7
2,794,067	-		LRK54_RS12515	0.64	+0.2
2,794,067	-		LRK54_RS12515	0.64	+1.2
2,794,067	-		LRK54_RS12515	0.64	+1.1
2,794,067	-		LRK54_RS12515	0.64	-0.2
2,794,067	-		LRK54_RS12515	0.64	+0.5
2,794,067	-		LRK54_RS12515	0.64	+0.9
2,794,067	-		LRK54_RS12515	0.64	-0.3
2,794,067	-		LRK54_RS12515	0.64	-0.2
2,794,067	-		LRK54_RS12515	0.64	+0.7
2,794,360	+				+0.2
2,794,360	+				-0.3
2,794,360	+				-0.4
2,794,360	+				-0.1
2,794,360	+				+0.8
2,794,360	+				+1.1
2,794,360	+				-0.2
2,794,361	-				+0.9
2,794,361	-				+0.5
2,794,361	-				-0.2
2,794,361	-				+1.6
2,794,361	-				-0.6
2,794,361	-				-0.0
2,794,361	-				+0.0
2,794,361	-				+1.2
2,794,361	-				+2.0
2,794,361	-				+2.0
2,794,361	-				-1.8
2,794,361	-				-0.4
2,794,361	-				+1.5
2,794,361	-				-0.5
2,794,361	-				-1.0
2,794,361	-				+0.6
2,794,361	-				+1.4
2,794,361	-				+0.7
2,794,497	+				-0.7
2,794,497	+				+0.8
2,794,497	+				+0.6
2,794,497	+				+1.2
2,794,497	+				-0.3
2,794,498	-				+0.4
2,794,498	-				-0.0
2,794,608	+				-1.7
2,794,608	+				+1.3
2,794,608	+				+0.3
2,794,608	+				+1.4
2,794,608	+				+0.8
2,794,608	+				+0.1
2,794,608	+				+2.8
2,794,608	+				+0.2
2,794,608	+				-1.1
2,794,608	+				-0.4
2,794,608	+				+0.7
2,794,608	+				+1.9
2,794,609	-				+0.0
2,794,609	-				+0.9
2,794,609	-				+0.9
2,794,609	-				-0.8
2,795,961	+		LRK54_RS12520	0.74	+1.7
2,795,961	+		LRK54_RS12520	0.74	-0.9
2,795,961	+		LRK54_RS12520	0.74	-1.2
2,795,961	+		LRK54_RS12520	0.74	-0.0
2,795,961	+		LRK54_RS12520	0.74	-0.3
2,795,961	+		LRK54_RS12520	0.74	+0.5
2,795,961	+		LRK54_RS12520	0.74	+0.2
2,795,961	+		LRK54_RS12520	0.74	+0.5
2,795,961	+		LRK54_RS12520	0.74	+1.2
2,795,961	+		LRK54_RS12520	0.74	+1.7
2,795,961	+		LRK54_RS12520	0.74	+1.2
2,795,961	+		LRK54_RS12520	0.74	+0.5
2,795,961	+		LRK54_RS12520	0.74	+0.8
2,795,961	+		LRK54_RS12520	0.74	+0.1
2,795,961	+		LRK54_RS12520	0.74	+1.7
2,795,961	+		LRK54_RS12520	0.74	+0.8
2,795,962	-		LRK54_RS12520	0.74	+1.0
2,795,962	-		LRK54_RS12520	0.74	+0.1
2,795,962	-		LRK54_RS12520	0.74	+0.7
2,795,962	-		LRK54_RS12520	0.74	+1.5
2,795,962	-		LRK54_RS12520	0.74	+0.3
2,795,962	-		LRK54_RS12520	0.74	+0.2
2,795,962	-		LRK54_RS12520	0.74	+0.2
2,795,962	-		LRK54_RS12520	0.74	+0.3
2,795,962	-		LRK54_RS12520	0.74	+0.1
2,795,962	-		LRK54_RS12520	0.74	-0.4
2,795,962	-		LRK54_RS12520	0.74	-0.3
2,795,962	-		LRK54_RS12520	0.74	+0.2
2,795,962	-		LRK54_RS12520	0.74	-0.5
2,795,962	-		LRK54_RS12520	0.74	+0.5
2,795,962	-		LRK54_RS12520	0.74	+0.7
2,795,962	-		LRK54_RS12520	0.74	-0.9
2,795,962	-		LRK54_RS12520	0.74	+0.5
2,796,024	+		LRK54_RS12520	0.77	-0.2
2,796,025	-		LRK54_RS12520	0.77	-0.9
2,796,240	+		LRK54_RS12520	0.88	+0.4
2,796,240	+		LRK54_RS12520	0.88	+0.2
2,796,240	+		LRK54_RS12520	0.88	+0.8
2,796,240	+		LRK54_RS12520	0.88	-0.2
2,796,240	+		LRK54_RS12520	0.88	-0.2
2,796,240	+		LRK54_RS12520	0.88	+0.1
2,796,241	-		LRK54_RS12520	0.88	+2.2
2,796,241	-		LRK54_RS12520	0.88	-0.1
2,796,241	-		LRK54_RS12520	0.88	-1.1
2,796,512	+				-0.2
2,796,512	+				+0.9
2,796,512	+				-0.5
2,796,512	+				-1.7
2,796,512	+				-0.8
2,796,512	+				-1.3
2,796,513	-				-2.0
2,796,513	-				-0.8
2,796,513	-				+0.6
2,796,513	-				+2.5
2,796,513	-				-0.8
2,796,513	-				+0.2
2,796,649	-				-0.3
2,796,649	-				-1.3
2,796,649	-				-0.4
2,796,649	-				-1.2
2,796,649	-				+1.0
2,796,649	-				+0.6
2,796,649	-				-1.3
2,796,649	-				-0.6
2,796,649	-				+0.1
2,796,649	-				+0.8
2,796,649	-				-0.3
2,796,649	-				+1.7
2,796,669	+				+0.8
2,796,669	+				+0.2
2,796,748	+				+0.8
2,796,748	+				+0.2
2,796,748	+				+0.5
2,796,748	+				-0.3
2,796,749	-				-0.0
2,796,749	-				+0.2
2,796,749	-				+0.5
2,796,749	-				+0.3
2,796,771	-				+0.6
2,796,800	+				+0.3
2,796,800	+				+1.2
2,796,800	+				-0.0
2,796,800	+				-0.7
2,796,800	+				+0.7
2,796,800	+				+0.2
2,796,800	+				+1.2
2,796,800	+				-2.1
2,796,800	+				-1.9
2,796,804	+				+1.2
2,796,804	+				+0.4
2,796,804	+				+1.1
2,796,810	+				+0.2
2,796,877	-		LRK54_RS12525	0.18	+0.2
2,796,877	-		LRK54_RS12525	0.18	+1.7
2,796,877	-		LRK54_RS12525	0.18	+0.1
2,796,908	+		LRK54_RS12525	0.28	-1.6
2,796,908	+		LRK54_RS12525	0.28	+0.3
2,796,908	+		LRK54_RS12525	0.28	+0.7
2,796,908	+		LRK54_RS12525	0.28	+0.5
2,797,007	+		LRK54_RS12525	0.62	-1.6
2,797,007	+		LRK54_RS12525	0.62	+0.7
2,797,008	-		LRK54_RS12525	0.62	-0.8
2,797,045	+		LRK54_RS12525	0.74	+0.7
2,797,045	+		LRK54_RS12525	0.74	-1.2
2,797,045	+		LRK54_RS12525	0.74	+0.3
2,797,045	+		LRK54_RS12525	0.74	+0.2
2,797,045	+		LRK54_RS12525	0.74	+2.5
2,797,045	+		LRK54_RS12525	0.74	-0.7
2,797,045	+		LRK54_RS12525	0.74	+0.4
2,797,045	+		LRK54_RS12525	0.74	-0.9
2,797,045	+		LRK54_RS12525	0.74	+1.2
2,797,045	+		LRK54_RS12525	0.74	+2.0
2,797,045	+		LRK54_RS12525	0.74	+0.2
2,797,046	-		LRK54_RS12525	0.75	+0.8
2,797,046	-		LRK54_RS12525	0.75	+0.5
2,797,046	-		LRK54_RS12525	0.75	+0.7
2,797,046	-		LRK54_RS12525	0.75	-0.3
2,797,057	-		LRK54_RS12525	0.78	+0.4
2,797,070	+		LRK54_RS12525	0.83	-0.1
2,797,070	+		LRK54_RS12525	0.83	-0.2
2,797,070	+		LRK54_RS12525	0.83	+0.2
2,797,070	+		LRK54_RS12525	0.83	-0.1
2,797,071	-		LRK54_RS12525	0.83	-0.1
2,797,085	+		LRK54_RS12525	0.88	+0.7
2,797,085	+		LRK54_RS12525	0.88	-1.1
2,797,085	+		LRK54_RS12525	0.88	+1.5
2,797,085	+		LRK54_RS12525	0.88	+0.7
2,797,085	+		LRK54_RS12525	0.88	-1.7
2,797,085	+		LRK54_RS12525	0.88	+1.1
2,797,085	+		LRK54_RS12525	0.88	+0.4
2,797,085	+		LRK54_RS12525	0.88	-0.1
2,797,085	+		LRK54_RS12525	0.88	+0.8
2,797,086	-		LRK54_RS12525	0.88	+0.2
2,797,086	-		LRK54_RS12525	0.88	-0.2
2,797,086	-		LRK54_RS12525	0.88	+0.1
2,797,086	-		LRK54_RS12525	0.88	-0.3
2,797,086	-		LRK54_RS12525	0.88	-1.0
2,797,086	-		LRK54_RS12525	0.88	+0.2
2,797,086	-		LRK54_RS12525	0.88	+0.5
2,797,154	+				+0.1
2,797,154	+				+0.4
2,797,176	-				-1.8
2,797,187	+				+0.4
2,797,187	+				+0.1
2,797,187	+				+1.7
2,797,187	+				+0.6
2,797,187	+				+0.4
2,797,188	-				+0.2
2,797,188	-				+0.5
2,797,278	+		LRK54_RS12530	0.35	+0.1
2,797,278	+		LRK54_RS12530	0.35	+0.6
2,797,278	+		LRK54_RS12530	0.35	-0.1
2,797,278	+		LRK54_RS12530	0.35	+1.0
2,797,278	+		LRK54_RS12530	0.35	+0.4
2,797,278	+		LRK54_RS12530	0.35	+0.1
2,797,278	+		LRK54_RS12530	0.35	+1.4
2,797,278	+		LRK54_RS12530	0.35	+0.9
2,797,278	+		LRK54_RS12530	0.35	-1.7
2,797,278	+		LRK54_RS12530	0.35	-1.0
2,797,278	+		LRK54_RS12530	0.35	+0.8
2,797,278	+		LRK54_RS12530	0.35	+0.4
2,797,278	+		LRK54_RS12530	0.35	+0.7
2,797,278	+		LRK54_RS12530	0.35	-0.3
2,797,278	+		LRK54_RS12530	0.35	-0.2
2,797,278	+		LRK54_RS12530	0.35	-0.2
2,797,278	+		LRK54_RS12530	0.35	-0.3
2,797,279	-		LRK54_RS12530	0.35	+0.0
2,797,279	-		LRK54_RS12530	0.35	+0.4
2,797,279	-		LRK54_RS12530	0.35	+1.2
2,797,279	-		LRK54_RS12530	0.35	-2.4
2,797,279	-		LRK54_RS12530	0.35	+0.9
2,797,279	-		LRK54_RS12530	0.35	+2.2
2,797,279	-		LRK54_RS12530	0.35	+0.1
2,797,279	-		LRK54_RS12530	0.35	+1.1
2,797,279	-		LRK54_RS12530	0.35	+0.7
2,797,279	-		LRK54_RS12530	0.35	-1.1
2,797,279	-		LRK54_RS12530	0.35	+1.0
2,797,279	-		LRK54_RS12530	0.35	-0.5
2,797,279	-		LRK54_RS12530	0.35	+0.4
2,797,317	+		LRK54_RS12530	0.50	-1.5
2,797,317	+		LRK54_RS12530	0.50	+0.1
2,797,317	+		LRK54_RS12530	0.50	+0.6
2,797,317	+		LRK54_RS12530	0.50	+0.2
2,797,317	+		LRK54_RS12530	0.50	+0.8
2,797,317	+		LRK54_RS12530	0.50	-0.1
2,797,318	-		LRK54_RS12530	0.51	+0.8
2,797,336	+		LRK54_RS12530	0.58	-0.1
2,797,336	+		LRK54_RS12530	0.58	+0.5
2,797,336	+		LRK54_RS12530	0.58	-1.5
2,797,336	+		LRK54_RS12530	0.58	+0.2
2,797,336	+		LRK54_RS12530	0.58	+0.9
2,797,336	+		LRK54_RS12530	0.58	+0.9
2,797,336	+		LRK54_RS12530	0.58	-0.8
2,797,336	+		LRK54_RS12530	0.58	+0.3
2,797,336	+		LRK54_RS12530	0.58	-0.1
2,797,336	+		LRK54_RS12530	0.58	+0.0
2,797,336	+		LRK54_RS12530	0.58	+1.7
2,797,336	+		LRK54_RS12530	0.58	+0.8
2,797,336	+		LRK54_RS12530	0.58	-0.3
2,797,336	+		LRK54_RS12530	0.58	+0.8
2,797,336	+		LRK54_RS12530	0.58	-0.4
2,797,337	-		LRK54_RS12530	0.58	+1.0
2,797,337	-		LRK54_RS12530	0.58	-0.3
2,797,337	-		LRK54_RS12530	0.58	+1.1
2,797,337	-		LRK54_RS12530	0.58	-0.7
2,797,337	-		LRK54_RS12530	0.58	-0.2
2,797,337	-		LRK54_RS12530	0.58	+0.2
2,797,337	-		LRK54_RS12530	0.58	+0.3
2,797,337	-		LRK54_RS12530	0.58	+0.2
2,797,337	-		LRK54_RS12530	0.58	+0.3
2,797,337	-		LRK54_RS12530	0.58	-0.8
2,797,404	+		LRK54_RS12530	0.84	+1.4
2,797,404	+		LRK54_RS12530	0.84	-1.5
2,797,404	+		LRK54_RS12530	0.84	+0.3
2,797,404	+		LRK54_RS12530	0.84	+0.3
2,797,404	+		LRK54_RS12530	0.84	+0.7
2,797,405	-		LRK54_RS12530	0.85	-0.7
2,797,405	-		LRK54_RS12530	0.85	+1.7
2,797,442	-				+0.3
2,797,463	-				+0.1