Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12515

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
2,792,516	-		LRK54_RS12510	0.70	-1.6
2,792,516	-		LRK54_RS12510	0.70	+0.7
2,792,728	+		LRK54_RS12510	0.80	+2.2
2,792,728	+		LRK54_RS12510	0.80	+1.2
2,792,729	-		LRK54_RS12510	0.80	+0.7
2,792,729	-		LRK54_RS12510	0.80	+1.4
2,793,130	+				+0.4
2,793,130	+				+1.0
2,793,130	+				-0.4
2,793,130	+				-0.2
2,793,130	+				+1.2
2,793,130	+				+0.1
2,793,130	+				+0.9
2,793,130	+				+0.4
2,793,130	+				-0.3
2,793,130	+				+2.0
2,793,130	+				+0.9
2,793,130	+				-0.2
2,793,130	+				+0.4
2,793,130	+				-0.5
2,793,131	-				-0.1
2,793,131	-				+1.7
2,793,131	-				+0.1
2,793,131	-				-0.3
2,793,131	-				+0.3
2,793,131	-				-0.1
2,793,131	-				+0.7
2,793,131	-				+1.1
2,793,131	-				+0.5
2,793,369	+				-0.1
2,793,485	-		LRK54_RS12515	0.13	+0.9
2,793,773	+		LRK54_RS12515	0.38	-1.5
2,793,773	+		LRK54_RS12515	0.38	+0.6
2,793,773	+		LRK54_RS12515	0.38	+1.2
2,793,773	+		LRK54_RS12515	0.38	+0.1
2,793,773	+		LRK54_RS12515	0.38	+0.7
2,793,773	+		LRK54_RS12515	0.38	+0.1
2,793,773	+		LRK54_RS12515	0.38	-0.2
2,793,773	+		LRK54_RS12515	0.38	+0.3
2,793,773	+		LRK54_RS12515	0.38	-0.1
2,793,773	+		LRK54_RS12515	0.38	+0.8
2,793,773	+		LRK54_RS12515	0.38	-0.7
2,793,773	+		LRK54_RS12515	0.38	-0.0
2,793,773	+		LRK54_RS12515	0.38	+0.1
2,793,773	+		LRK54_RS12515	0.38	+1.7
2,793,773	+		LRK54_RS12515	0.38	+0.5
2,793,773	+		LRK54_RS12515	0.38	+1.7
2,793,773	+		LRK54_RS12515	0.38	-0.1
2,793,773	+		LRK54_RS12515	0.38	+0.7
2,793,773	+		LRK54_RS12515	0.38	+1.1
2,793,773	+		LRK54_RS12515	0.38	-0.1
2,793,773	+		LRK54_RS12515	0.38	-0.6
2,793,773	+		LRK54_RS12515	0.38	+0.9
2,793,773	+		LRK54_RS12515	0.38	-0.6
2,793,773	+		LRK54_RS12515	0.38	+0.3
2,793,773	+		LRK54_RS12515	0.38	+0.1
2,793,773	+		LRK54_RS12515	0.38	+2.2
2,793,773	+		LRK54_RS12515	0.38	+0.5
2,793,773	+		LRK54_RS12515	0.38	+2.0
2,793,773	+		LRK54_RS12515	0.38	-0.8
2,793,773	+		LRK54_RS12515	0.38	-1.8
2,793,773	+		LRK54_RS12515	0.38	+1.2
2,793,773	+		LRK54_RS12515	0.38	+0.5
2,793,773	+		LRK54_RS12515	0.38	-0.3
2,793,773	+		LRK54_RS12515	0.38	+1.0
2,793,773	+		LRK54_RS12515	0.38	-0.7
2,793,773	+		LRK54_RS12515	0.38	-0.0
2,793,773	+		LRK54_RS12515	0.38	-0.5
2,793,773	+		LRK54_RS12515	0.38	+1.4
2,793,773	+		LRK54_RS12515	0.38	+0.5
2,793,773	+		LRK54_RS12515	0.38	-0.5
2,793,773	+		LRK54_RS12515	0.38	+0.4
2,793,774	-		LRK54_RS12515	0.38	-1.6
2,793,774	-		LRK54_RS12515	0.38	+2.7
2,793,774	-		LRK54_RS12515	0.38	+0.1
2,793,774	-		LRK54_RS12515	0.38	+0.4
2,793,774	-		LRK54_RS12515	0.38	+1.9
2,793,774	-		LRK54_RS12515	0.38	+1.7
2,793,774	-		LRK54_RS12515	0.38	+0.4
2,793,774	-		LRK54_RS12515	0.38	+0.5
2,793,774	-		LRK54_RS12515	0.38	+0.8
2,793,774	-		LRK54_RS12515	0.38	+0.3
2,793,774	-		LRK54_RS12515	0.38	+1.0
2,793,774	-		LRK54_RS12515	0.38	+1.2
2,793,774	-		LRK54_RS12515	0.38	+0.5
2,793,774	-		LRK54_RS12515	0.38	+0.2
2,793,774	-		LRK54_RS12515	0.38	+0.4
2,793,774	-		LRK54_RS12515	0.38	+3.2
2,793,774	-		LRK54_RS12515	0.38	+0.1
2,793,774	-		LRK54_RS12515	0.38	+0.6
2,793,774	-		LRK54_RS12515	0.38	-0.0
2,793,774	-		LRK54_RS12515	0.38	+0.6
2,793,774	-		LRK54_RS12515	0.38	+2.7
2,793,774	-		LRK54_RS12515	0.38	+0.5
2,793,774	-		LRK54_RS12515	0.38	+0.4
2,793,774	-		LRK54_RS12515	0.38	+0.2
2,793,774	-		LRK54_RS12515	0.38	-1.2
2,793,774	-		LRK54_RS12515	0.38	+1.2
2,793,774	-		LRK54_RS12515	0.38	+2.2
2,793,774	-		LRK54_RS12515	0.38	+1.4
2,793,774	-		LRK54_RS12515	0.38	+0.4
2,793,774	-		LRK54_RS12515	0.38	+0.3
2,793,774	-		LRK54_RS12515	0.38	+0.2
2,793,774	-		LRK54_RS12515	0.38	-0.3
2,793,946	+		LRK54_RS12515	0.54	+2.2
2,793,946	+		LRK54_RS12515	0.54	+0.5
2,793,946	+		LRK54_RS12515	0.54	+0.5
2,793,946	+		LRK54_RS12515	0.54	-0.3
2,793,946	+		LRK54_RS12515	0.54	+1.2
2,793,946	+		LRK54_RS12515	0.54	-0.9
2,793,947	-		LRK54_RS12515	0.54	-0.1
2,793,947	-		LRK54_RS12515	0.54	+1.4
2,793,947	-		LRK54_RS12515	0.54	+0.7
2,793,947	-		LRK54_RS12515	0.54	+1.0
2,794,006	+		LRK54_RS12515	0.59	+0.7
2,794,006	+		LRK54_RS12515	0.59	+0.1
2,794,006	+		LRK54_RS12515	0.59	+0.5
2,794,006	+		LRK54_RS12515	0.59	-0.1
2,794,006	+		LRK54_RS12515	0.59	+1.7
2,794,006	+		LRK54_RS12515	0.59	+0.2
2,794,007	-		LRK54_RS12515	0.59	-0.5
2,794,007	-		LRK54_RS12515	0.59	+1.5
2,794,007	-		LRK54_RS12515	0.59	+0.7
2,794,007	-		LRK54_RS12515	0.59	+1.2
2,794,007	-		LRK54_RS12515	0.59	+0.2
2,794,007	-		LRK54_RS12515	0.59	+0.7
2,794,007	-		LRK54_RS12515	0.59	+0.2
2,794,007	-		LRK54_RS12515	0.59	+1.4
2,794,007	-		LRK54_RS12515	0.59	+0.1
2,794,007	-		LRK54_RS12515	0.59	+1.2
2,794,007	-		LRK54_RS12515	0.59	+1.8
2,794,007	-		LRK54_RS12515	0.59	-0.4
2,794,066	+		LRK54_RS12515	0.64	-0.1
2,794,066	+		LRK54_RS12515	0.64	+0.3
2,794,066	+		LRK54_RS12515	0.64	-0.9
2,794,066	+		LRK54_RS12515	0.64	+0.5
2,794,066	+		LRK54_RS12515	0.64	+2.0
2,794,066	+		LRK54_RS12515	0.64	+0.3
2,794,066	+		LRK54_RS12515	0.64	+0.8
2,794,066	+		LRK54_RS12515	0.64	+0.2
2,794,066	+		LRK54_RS12515	0.64	+1.7
2,794,066	+		LRK54_RS12515	0.64	+0.3
2,794,066	+		LRK54_RS12515	0.64	-0.8
2,794,066	+		LRK54_RS12515	0.64	+1.0
2,794,066	+		LRK54_RS12515	0.64	+0.7
2,794,066	+		LRK54_RS12515	0.64	+0.6
2,794,066	+		LRK54_RS12515	0.64	+0.4
2,794,066	+		LRK54_RS12515	0.64	+0.7
2,794,067	-		LRK54_RS12515	0.64	+0.7
2,794,067	-		LRK54_RS12515	0.64	+0.2
2,794,067	-		LRK54_RS12515	0.64	+1.2
2,794,067	-		LRK54_RS12515	0.64	+1.1
2,794,067	-		LRK54_RS12515	0.64	-0.2
2,794,067	-		LRK54_RS12515	0.64	+0.5
2,794,067	-		LRK54_RS12515	0.64	+0.9
2,794,067	-		LRK54_RS12515	0.64	-0.3
2,794,067	-		LRK54_RS12515	0.64	-0.2
2,794,067	-		LRK54_RS12515	0.64	+0.7
2,794,360	+				+0.2
2,794,360	+				-0.3
2,794,360	+				-0.4
2,794,360	+				-0.1
2,794,360	+				+0.8
2,794,360	+				+1.1
2,794,360	+				-0.2
2,794,361	-				+0.9
2,794,361	-				+0.5
2,794,361	-				-0.2
2,794,361	-				+1.6
2,794,361	-				-0.6
2,794,361	-				-0.0
2,794,361	-				+0.0
2,794,361	-				+1.2
2,794,361	-				+2.0
2,794,361	-				+2.0
2,794,361	-				-1.8
2,794,361	-				-0.4
2,794,361	-				+1.5
2,794,361	-				-0.5
2,794,361	-				-1.0
2,794,361	-				+0.6
2,794,361	-				+1.4
2,794,361	-				+0.7
2,794,497	+				-0.7
2,794,497	+				+0.8
2,794,497	+				+0.6
2,794,497	+				+1.2
2,794,497	+				-0.3
2,794,498	-				+0.4
2,794,498	-				-0.0
2,794,608	+				-1.7
2,794,608	+				+1.3
2,794,608	+				+0.3
2,794,608	+				+1.4
2,794,608	+				+0.8
2,794,608	+				+0.1
2,794,608	+				+2.8
2,794,608	+				+0.2
2,794,608	+				-1.1
2,794,608	+				-0.4
2,794,608	+				+0.7
2,794,608	+				+1.9
2,794,609	-				+0.0
2,794,609	-				+0.9
2,794,609	-				+0.9
2,794,609	-				-0.8