Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12490

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
2,784,886	+		LRK54_RS12485	0.41	+0.3
2,784,886	+		LRK54_RS12485	0.41	+0.4
2,784,887	-		LRK54_RS12485	0.41	-0.7
2,784,887	-		LRK54_RS12485	0.41	-0.4
2,784,887	-		LRK54_RS12485	0.41	+0.7
2,784,887	-		LRK54_RS12485	0.41	-0.3
2,784,887	-		LRK54_RS12485	0.41	-0.9
2,784,887	-		LRK54_RS12485	0.41	-0.1
2,784,887	-		LRK54_RS12485	0.41	-0.1
2,784,916	+		LRK54_RS12485	0.43	-0.1
2,784,916	+		LRK54_RS12485	0.43	+0.2
2,784,916	+		LRK54_RS12485	0.43	+0.6
2,784,916	+		LRK54_RS12485	0.43	-0.9
2,784,916	+		LRK54_RS12485	0.43	-0.7
2,784,916	+		LRK54_RS12485	0.43	-0.3
2,784,916	+		LRK54_RS12485	0.43	+0.9
2,784,916	+		LRK54_RS12485	0.43	-0.3
2,784,916	+		LRK54_RS12485	0.43	+0.2
2,784,916	+		LRK54_RS12485	0.43	+0.5
2,784,916	+		LRK54_RS12485	0.43	+0.7
2,784,917	-		LRK54_RS12485	0.43	+0.0
2,784,917	-		LRK54_RS12485	0.43	-2.5
2,784,917	-		LRK54_RS12485	0.43	-0.1
2,784,917	-		LRK54_RS12485	0.43	+0.0
2,784,917	-		LRK54_RS12485	0.43	-0.2
2,784,917	-		LRK54_RS12485	0.43	-0.8
2,784,917	-		LRK54_RS12485	0.43	-0.6
2,784,917	-		LRK54_RS12485	0.43	+1.4
2,784,917	-		LRK54_RS12485	0.43	-1.0
2,784,917	-		LRK54_RS12485	0.43	+0.4
2,784,917	-		LRK54_RS12485	0.43	+0.0
2,784,917	-		LRK54_RS12485	0.43	-1.5
2,784,917	-		LRK54_RS12485	0.43	+1.1
2,784,940	+		LRK54_RS12485	0.45	+0.5
2,784,940	+		LRK54_RS12485	0.45	+0.5
2,784,940	+		LRK54_RS12485	0.45	+0.2
2,784,940	+		LRK54_RS12485	0.45	-1.7
2,784,940	+		LRK54_RS12485	0.45	+0.7
2,784,941	-		LRK54_RS12485	0.45	+0.5
2,784,941	-		LRK54_RS12485	0.45	-1.3
2,784,941	-		LRK54_RS12485	0.45	+0.7
2,784,941	-		LRK54_RS12485	0.45	+0.7
2,784,941	-		LRK54_RS12485	0.45	+0.3
2,784,941	-		LRK54_RS12485	0.45	+0.1
2,784,941	-		LRK54_RS12485	0.45	-0.3
2,785,192	+		LRK54_RS12485	0.61	+1.0
2,785,192	+		LRK54_RS12485	0.61	+0.8
2,785,192	+		LRK54_RS12485	0.61	+1.8
2,785,192	+		LRK54_RS12485	0.61	+0.2
2,785,192	+		LRK54_RS12485	0.61	-0.3
2,785,192	+		LRK54_RS12485	0.61	-0.5
2,785,193	-		LRK54_RS12485	0.61	-0.1
2,785,193	-		LRK54_RS12485	0.61	+1.4
2,785,246	+		LRK54_RS12485	0.65	-0.3
2,785,246	+		LRK54_RS12485	0.65	+0.4
2,785,246	+		LRK54_RS12485	0.65	+0.1
2,785,246	+		LRK54_RS12485	0.65	-0.4
2,785,246	+		LRK54_RS12485	0.65	-0.3
2,785,246	+		LRK54_RS12485	0.65	-0.3
2,785,246	+		LRK54_RS12485	0.65	+2.9
2,785,246	+		LRK54_RS12485	0.65	-0.6
2,785,246	+		LRK54_RS12485	0.65	-1.2
2,785,247	-		LRK54_RS12485	0.65	+1.4
2,785,247	-		LRK54_RS12485	0.65	+0.2
2,785,247	-		LRK54_RS12485	0.65	-0.2
2,785,247	-		LRK54_RS12485	0.65	-0.4
2,785,247	-		LRK54_RS12485	0.65	+0.2
2,785,247	-		LRK54_RS12485	0.65	+1.0
2,785,247	-		LRK54_RS12485	0.65	+0.4
2,785,247	-		LRK54_RS12485	0.65	+0.1
2,785,247	-		LRK54_RS12485	0.65	-1.2
2,785,247	-		LRK54_RS12485	0.65	-0.1
2,785,546	+		LRK54_RS12485	0.84	+1.6
2,785,546	+		LRK54_RS12485	0.84	-0.6
2,785,546	+		LRK54_RS12485	0.84	-0.2
2,785,546	+		LRK54_RS12485	0.84	-0.3
2,785,702	+				+0.8
2,785,702	+				+0.7
2,785,703	-				+0.6
2,785,703	-				+0.3
2,785,703	-				-0.8
2,785,908	+		LRK54_RS12490	0.12	-0.8
2,785,908	+		LRK54_RS12490	0.12	+1.2
2,785,908	+		LRK54_RS12490	0.12	-0.0
2,785,908	+		LRK54_RS12490	0.12	+0.0
2,785,908	+		LRK54_RS12490	0.12	+0.7
2,785,908	+		LRK54_RS12490	0.12	+0.1
2,785,908	+		LRK54_RS12490	0.12	-0.5
2,785,908	+		LRK54_RS12490	0.12	+1.2
2,785,908	+		LRK54_RS12490	0.12	-0.6
2,785,908	+		LRK54_RS12490	0.12	+0.8
2,785,908	+		LRK54_RS12490	0.12	+0.3
2,785,908	+		LRK54_RS12490	0.12	-0.3
2,785,908	+		LRK54_RS12490	0.12	+1.2
2,785,909	-		LRK54_RS12490	0.12	+0.7
2,785,909	-		LRK54_RS12490	0.12	+0.9
2,785,909	-		LRK54_RS12490	0.12	-1.6
2,785,909	-		LRK54_RS12490	0.12	-0.4
2,785,909	-		LRK54_RS12490	0.12	+0.9
2,785,909	-		LRK54_RS12490	0.12	-0.5
2,785,909	-		LRK54_RS12490	0.12	+0.7
2,785,909	-		LRK54_RS12490	0.12	+0.0
2,785,909	-		LRK54_RS12490	0.12	+0.6
2,785,909	-		LRK54_RS12490	0.12	-0.6
2,785,909	-		LRK54_RS12490	0.12	-0.5
2,785,909	-		LRK54_RS12490	0.12	+0.2
2,785,909	-		LRK54_RS12490	0.12	+0.7
2,785,909	-		LRK54_RS12490	0.12	+0.2
2,786,307	+		LRK54_RS12490	0.48	+0.4
2,786,307	+		LRK54_RS12490	0.48	-0.8
2,786,308	-		LRK54_RS12490	0.48	-1.4
2,786,308	-		LRK54_RS12490	0.48	+1.2
2,786,308	-		LRK54_RS12490	0.48	-0.5
2,786,454	+		LRK54_RS12490	0.61	+0.4
2,786,454	+		LRK54_RS12490	0.61	+0.8
2,786,454	+		LRK54_RS12490	0.61	+0.7
2,786,454	+		LRK54_RS12490	0.61	-0.4
2,786,455	-		LRK54_RS12490	0.61	+2.0
2,786,455	-		LRK54_RS12490	0.61	+0.2
2,786,455	-		LRK54_RS12490	0.61	+0.2
2,786,455	-		LRK54_RS12490	0.61	+0.2
2,786,463	+		LRK54_RS12490	0.62	+0.2
2,786,464	-		LRK54_RS12490	0.62	-0.3
2,786,464	-		LRK54_RS12490	0.62	+0.4
2,786,464	-		LRK54_RS12490	0.62	+1.2
2,786,652	+		LRK54_RS12490	0.79	-0.6
2,786,652	+		LRK54_RS12490	0.79	+0.9
2,786,652	+		LRK54_RS12490	0.79	+0.4
2,786,652	+		LRK54_RS12490	0.79	-0.3
2,786,652	+		LRK54_RS12490	0.79	+1.7
2,786,652	+		LRK54_RS12490	0.79	+0.2
2,786,652	+		LRK54_RS12490	0.79	-0.9
2,786,652	+		LRK54_RS12490	0.79	+0.1
2,786,653	-		LRK54_RS12490	0.79	-0.0
2,786,653	-		LRK54_RS12490	0.79	+0.6
2,786,760	+		LRK54_RS12490	0.88	+0.7
2,786,760	+		LRK54_RS12490	0.88	+1.7
2,786,760	+		LRK54_RS12490	0.88	+0.1
2,786,760	+		LRK54_RS12490	0.88	+0.2
2,786,761	-		LRK54_RS12490	0.88	-1.5
2,786,761	-		LRK54_RS12490	0.88	+1.5
2,786,761	-		LRK54_RS12490	0.88	+1.5
2,786,761	-		LRK54_RS12490	0.88	+0.7
2,786,761	-		LRK54_RS12490	0.88	+0.9
2,786,761	-		LRK54_RS12490	0.88	+1.1
2,787,185	+		LRK54_RS12495	0.28	-0.3
2,787,185	+		LRK54_RS12495	0.28	+2.0
2,787,185	+		LRK54_RS12495	0.28	+1.0
2,787,185	+		LRK54_RS12495	0.28	+0.8
2,787,185	+		LRK54_RS12495	0.28	+3.6
2,787,185	+		LRK54_RS12495	0.28	+0.0
2,787,185	+		LRK54_RS12495	0.28	+1.5
2,787,185	+		LRK54_RS12495	0.28	+0.5
2,787,185	+		LRK54_RS12495	0.28	+0.3
2,787,185	+		LRK54_RS12495	0.28	+0.5
2,787,185	+		LRK54_RS12495	0.28	-0.2
2,787,185	+		LRK54_RS12495	0.28	-0.1
2,787,186	-		LRK54_RS12495	0.28	-0.3
2,787,186	-		LRK54_RS12495	0.28	-0.3
2,787,186	-				+1.2
2,787,186	-		LRK54_RS12495	0.28	+0.7
2,787,186	-		LRK54_RS12495	0.28	+0.2
2,787,186	-		LRK54_RS12495	0.28	+0.9
2,787,186	-		LRK54_RS12495	0.28	+0.4
2,787,186	-		LRK54_RS12495	0.28	-0.8
2,787,186	-		LRK54_RS12495	0.28	+2.2
2,787,186	-		LRK54_RS12495	0.28	+1.2
2,787,186	-		LRK54_RS12495	0.28	+1.2
2,787,186	-		LRK54_RS12495	0.28	+0.0
2,787,186	-		LRK54_RS12495	0.28	-0.5
2,787,401	+		LRK54_RS12495	0.50	-0.2
2,787,401	+		LRK54_RS12495	0.50	+0.0
2,787,401	+		LRK54_RS12495	0.50	+0.7
2,787,401	+		LRK54_RS12495	0.50	-0.9
2,787,401	+		LRK54_RS12495	0.50	+0.0
2,787,401	+		LRK54_RS12495	0.50	-0.7
2,787,401	+		LRK54_RS12495	0.50	+2.2
2,787,402	-		LRK54_RS12495	0.50	+0.7
2,787,402	-		LRK54_RS12495	0.50	-0.7
2,787,402	-		LRK54_RS12495	0.50	+1.6
2,787,402	-		LRK54_RS12495	0.50	+0.7
2,787,402	-		LRK54_RS12495	0.50	-0.2
2,787,402	-		LRK54_RS12495	0.50	+1.7
2,787,402	-		LRK54_RS12495	0.50	+2.0
2,787,402	-		LRK54_RS12495	0.50	+0.1
2,787,620	+		LRK54_RS12495	0.72	+0.3
2,787,620	+		LRK54_RS12495	0.72	-1.4
2,787,621	-		LRK54_RS12495	0.72	+0.7
2,787,621	-		LRK54_RS12495	0.72	-0.1