Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12055

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
2,673,293	-		LRK54_RS12050	0.44	+0.5
2,673,293	-		LRK54_RS12050	0.44	-0.1
2,673,298	+		LRK54_RS12050	0.45	+0.3
2,673,298	+		LRK54_RS12050	0.45	+0.4
2,673,298	+		LRK54_RS12050	0.45	+0.9
2,673,298	+		LRK54_RS12050	0.45	+1.1
2,673,299	-		LRK54_RS12050	0.45	+0.5
2,673,299	-		LRK54_RS12050	0.45	-0.6
2,673,299	-		LRK54_RS12050	0.45	-0.6
2,673,299	-		LRK54_RS12050	0.45	+0.4
2,673,345	+		LRK54_RS12050	0.48	-0.6
2,673,345	+		LRK54_RS12050	0.48	-0.4
2,673,345	+		LRK54_RS12050	0.48	-0.1
2,673,345	+		LRK54_RS12050	0.48	-0.9
2,673,346	-		LRK54_RS12050	0.48	+0.5
2,673,346	-		LRK54_RS12050	0.48	-0.3
2,673,346	-		LRK54_RS12050	0.48	-0.2
2,673,346	-		LRK54_RS12050	0.48	-0.5
2,673,346	-		LRK54_RS12050	0.48	-0.5
2,673,499	+		LRK54_RS12050	0.58	-1.2
2,673,500	-		LRK54_RS12050	0.58	+0.4
2,673,500	-		LRK54_RS12050	0.58	-1.3
2,673,500	-		LRK54_RS12050	0.58	-0.5
2,673,500	-		LRK54_RS12050	0.58	-0.9
2,673,511	+		LRK54_RS12050	0.59	+0.9
2,673,511	+		LRK54_RS12050	0.59	+0.6
2,673,512	-		LRK54_RS12050	0.59	-1.0
2,673,512	-		LRK54_RS12050	0.59	+0.6
2,673,512	-		LRK54_RS12050	0.59	+0.5
2,673,559	+		LRK54_RS12050	0.62	+0.3
2,673,559	+		LRK54_RS12050	0.62	+0.1
2,673,560	-		LRK54_RS12050	0.62	-0.7
2,673,560	-		LRK54_RS12050	0.62	+0.8
2,673,560	-		LRK54_RS12050	0.62	-0.2
2,673,560	-		LRK54_RS12050	0.62	-0.9
2,673,560	-		LRK54_RS12050	0.62	-0.1
2,673,574	+		LRK54_RS12050	0.63	-0.8
2,673,574	+		LRK54_RS12050	0.63	+0.0
2,673,574	+		LRK54_RS12050	0.63	-0.3
2,673,574	+		LRK54_RS12050	0.63	-0.3
2,673,574	+		LRK54_RS12050	0.63	-0.8
2,673,574	+		LRK54_RS12050	0.63	-0.8
2,673,575	-		LRK54_RS12050	0.63	+0.8
2,673,575	-		LRK54_RS12050	0.63	-1.7
2,673,575	-		LRK54_RS12050	0.63	-1.6
2,673,575	-		LRK54_RS12050	0.63	+0.4
2,673,575	-		LRK54_RS12050	0.63	-1.2
2,673,719	-		LRK54_RS12050	0.72	-0.2
2,673,719	-		LRK54_RS12050	0.72	-0.2
2,674,212	+				-0.3
2,674,212	+				-0.7
2,674,213	-				-0.6
2,674,213	-				+0.5
2,674,213	-				+0.4
2,674,213	-				-0.6
2,674,213	-				-0.5
2,674,213	-				-1.0
2,675,007	+		LRK54_RS12055	0.85	+1.2
2,675,007	+		LRK54_RS12055	0.85	-0.5
2,675,007	+		LRK54_RS12055	0.85	-0.5
2,675,008	-		LRK54_RS12055	0.85	+0.2
2,675,088	+				-0.2
2,675,088	+				+0.4
2,675,088	+				+0.0
2,675,088	+				-0.8
2,675,088	+				-0.7
2,675,088	+				-1.5
2,675,088	+				+0.4
2,675,089	-				-0.5
2,675,089	-				+0.5
2,675,089	-				-0.2
2,675,089	-				+0.3
2,675,089	-				+0.3
2,675,089	-				+2.4
2,675,177	+				+0.4
2,675,416	+		LRK54_RS12060	0.20	+0.1
2,675,416	+		LRK54_RS12060	0.20	+0.5
2,675,416	+		LRK54_RS12060	0.20	-1.7
2,675,416	+		LRK54_RS12060	0.20	-0.9
2,675,417	-		LRK54_RS12060	0.20	-2.5
2,675,417	-		LRK54_RS12060	0.20	-0.7
2,675,417	-		LRK54_RS12060	0.20	-0.8
2,675,458	+		LRK54_RS12060	0.22	-1.4
2,675,458	+		LRK54_RS12060	0.22	-0.1
2,675,458	+		LRK54_RS12060	0.22	-0.6
2,675,458	+		LRK54_RS12060	0.22	-0.3
2,675,458	+		LRK54_RS12060	0.22	+1.7
2,675,458	+		LRK54_RS12060	0.22	-0.8
2,675,458	+		LRK54_RS12060	0.22	+2.7
2,675,458	+		LRK54_RS12060	0.22	-0.2
2,675,458	+		LRK54_RS12060	0.22	-0.3
2,675,458	+		LRK54_RS12060	0.22	+2.2
2,675,458	+		LRK54_RS12060	0.22	-1.7
2,675,458	+		LRK54_RS12060	0.22	-0.6
2,675,458	+		LRK54_RS12060	0.22	-0.4
2,675,459	-		LRK54_RS12060	0.22	+0.2
2,675,459	-		LRK54_RS12060	0.22	-1.3
2,675,459	-		LRK54_RS12060	0.22	-0.1
2,675,459	-		LRK54_RS12060	0.22	+0.8
2,675,459	-		LRK54_RS12060	0.22	-0.1
2,675,459	-		LRK54_RS12060	0.22	-0.3
2,675,459	-		LRK54_RS12060	0.22	-0.1
2,675,459	-		LRK54_RS12060	0.22	+2.2
2,675,459	-		LRK54_RS12060	0.22	-1.2
2,675,463	+		LRK54_RS12060	0.23	+0.6
2,675,463	+		LRK54_RS12060	0.23	-0.8
2,675,464	+		LRK54_RS12060	0.23	-1.2
2,675,464	+		LRK54_RS12060	0.23	-0.8
2,675,464	+		LRK54_RS12060	0.23	-0.6
2,675,464	+		LRK54_RS12060	0.23	-1.3
2,675,464	+		LRK54_RS12060	0.23	+1.8
2,675,464	+		LRK54_RS12060	0.23	-1.5
2,675,464	+		LRK54_RS12060	0.23	-0.5
2,675,464	+		LRK54_RS12060	0.23	-0.5
2,675,464	+		LRK54_RS12060	0.23	+0.2
2,675,464	+		LRK54_RS12060	0.23	-0.0
2,675,464	+		LRK54_RS12060	0.23	-2.3
2,675,465	-		LRK54_RS12060	0.23	+0.6
2,675,465	-		LRK54_RS12060	0.23	-1.0
2,675,465	-		LRK54_RS12060	0.23	-0.5
2,675,465	-		LRK54_RS12060	0.23	-1.0
2,675,465	-		LRK54_RS12060	0.23	-0.3
2,675,465	-		LRK54_RS12060	0.23	+0.6
2,675,465	-		LRK54_RS12060	0.23	-2.6
2,675,465	-		LRK54_RS12060	0.23	+0.1
2,675,465	-		LRK54_RS12060	0.23	-0.4
2,675,465	-		LRK54_RS12060	0.23	+0.6
2,675,465	-		LRK54_RS12060	0.23	+0.2
2,675,465	-		LRK54_RS12060	0.23	-0.7
2,675,465	-		LRK54_RS12060	0.23	+1.4
2,675,465	-		LRK54_RS12060	0.23	-0.3
2,675,527	+		LRK54_RS12060	0.27	+0.5
2,675,528	-		LRK54_RS12060	0.27	+0.5
2,675,929	+		LRK54_RS12060	0.53	-0.3
2,675,929	+		LRK54_RS12060	0.53	-0.0
2,675,929	+		LRK54_RS12060	0.53	+0.3
2,675,929	+		LRK54_RS12060	0.53	+0.3
2,675,929	+		LRK54_RS12060	0.53	-0.2
2,675,929	+		LRK54_RS12060	0.53	-0.2
2,675,930	-		LRK54_RS12060	0.53	-0.3
2,675,930	-		LRK54_RS12060	0.53	-1.2
2,675,930	-		LRK54_RS12060	0.53	+0.3
2,675,930	-		LRK54_RS12060	0.53	+0.4
2,676,029	+		LRK54_RS12060	0.59	+0.4
2,676,030	-		LRK54_RS12060	0.59	-0.8
2,676,030	-		LRK54_RS12060	0.59	+0.2
2,676,030	-		LRK54_RS12060	0.59	+0.5
2,676,030	-		LRK54_RS12060	0.59	-1.5
2,676,031	-		LRK54_RS12060	0.59	+0.9
2,676,034	+		LRK54_RS12060	0.59	-0.0
2,676,034	+		LRK54_RS12060	0.59	+0.8
2,676,034	+		LRK54_RS12060	0.59	-0.5
2,676,034	+		LRK54_RS12060	0.59	+0.5
2,676,034	+		LRK54_RS12060	0.59	-0.3
2,676,034	+		LRK54_RS12060	0.59	-0.4
2,676,034	+		LRK54_RS12060	0.59	+0.9
2,676,034	+		LRK54_RS12060	0.59	+0.4
2,676,034	+		LRK54_RS12060	0.59	+0.7
2,676,034	+		LRK54_RS12060	0.59	-0.2
2,676,034	+				+1.2
2,676,034	+		LRK54_RS12060	0.59	-2.9
2,676,034	+		LRK54_RS12060	0.59	+2.0
2,676,034	+		LRK54_RS12060	0.59	-0.8
2,676,034	+		LRK54_RS12060	0.59	+1.0
2,676,034	+		LRK54_RS12060	0.59	-0.1
2,676,034	+		LRK54_RS12060	0.59	-0.6
2,676,034	+		LRK54_RS12060	0.59	-0.9
2,676,034	+		LRK54_RS12060	0.59	-0.1
2,676,034	+		LRK54_RS12060	0.59	-0.2
2,676,034	+		LRK54_RS12060	0.59	-0.4
2,676,034	+		LRK54_RS12060	0.59	-1.1
2,676,034	+		LRK54_RS12060	0.59	-0.8
2,676,034	+		LRK54_RS12060	0.59	-2.0
2,676,034	+		LRK54_RS12060	0.59	-1.6
2,676,034	+		LRK54_RS12060	0.59	-0.1
2,676,034	+		LRK54_RS12060	0.59	-0.5
2,676,034	+		LRK54_RS12060	0.59	-0.1
2,676,034	+		LRK54_RS12060	0.59	-0.7
2,676,034	+		LRK54_RS12060	0.59	-0.0
2,676,034	+		LRK54_RS12060	0.59	-0.3
2,676,034	+		LRK54_RS12060	0.59	-0.4
2,676,034	+		LRK54_RS12060	0.59	-0.6
2,676,034	+		LRK54_RS12060	0.59	-0.0
2,676,034	+		LRK54_RS12060	0.59	-0.5
2,676,034	+		LRK54_RS12060	0.59	+0.2
2,676,035	-		LRK54_RS12060	0.59	-0.4
2,676,035	-		LRK54_RS12060	0.59	-0.5
2,676,035	-		LRK54_RS12060	0.59	-0.3
2,676,035	-		LRK54_RS12060	0.59	+0.5
2,676,035	-		LRK54_RS12060	0.59	-0.1
2,676,035	-		LRK54_RS12060	0.59	+0.8
2,676,035	-		LRK54_RS12060	0.59	+0.1
2,676,035	-		LRK54_RS12060	0.59	-0.4
2,676,035	-		LRK54_RS12060	0.59	+0.4
2,676,035	-		LRK54_RS12060	0.59	-1.3
2,676,035	-		LRK54_RS12060	0.59	+1.2
2,676,035	-		LRK54_RS12060	0.59	+0.4
2,676,035	-		LRK54_RS12060	0.59	-0.1
2,676,035	-		LRK54_RS12060	0.59	-0.1
2,676,035	-		LRK54_RS12060	0.59	-0.3
2,676,035	-		LRK54_RS12060	0.59	+0.2
2,676,035	-		LRK54_RS12060	0.59	-0.1
2,676,035	-		LRK54_RS12060	0.59	+1.7
2,676,035	-		LRK54_RS12060	0.59	+0.4
2,676,035	-		LRK54_RS12060	0.59	+1.4
2,676,035	-		LRK54_RS12060	0.59	-0.2
2,676,035	-		LRK54_RS12060	0.59	+1.5
2,676,073	+		LRK54_RS12060	0.62	-0.2
2,676,073	+		LRK54_RS12060	0.62	-0.8
2,676,073	+		LRK54_RS12060	0.62	-0.1
2,676,073	+		LRK54_RS12060	0.62	+0.2
2,676,074	-		LRK54_RS12060	0.62	+0.7
2,676,074	-		LRK54_RS12060	0.62	+1.9