Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11885

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
2,633,421	+		LRK54_RS11880	0.53	+1.0
2,633,421	+		LRK54_RS11880	0.53	-0.4
2,633,421	+		LRK54_RS11880	0.53	+0.1
2,633,421	+		LRK54_RS11880	0.53	-0.6
2,633,421	+		LRK54_RS11880	0.53	-0.3
2,633,421	+		LRK54_RS11880	0.53	-0.5
2,633,421	+		LRK54_RS11880	0.53	+0.6
2,633,421	+		LRK54_RS11880	0.53	-0.2
2,633,422	-		LRK54_RS11880	0.53	-0.4
2,633,422	-		LRK54_RS11880	0.53	+0.2
2,633,422	-		LRK54_RS11880	0.53	+1.0
2,633,431	-		LRK54_RS11880	0.54	-0.0
2,633,588	+		LRK54_RS11880	0.62	-0.3
2,633,588	+		LRK54_RS11880	0.62	+0.3
2,633,588	+		LRK54_RS11880	0.62	-0.2
2,633,588	+		LRK54_RS11880	0.62	-0.1
2,633,588	+		LRK54_RS11880	0.62	-0.8
2,633,588	+		LRK54_RS11880	0.62	+0.1
2,633,588	+		LRK54_RS11880	0.62	-0.3
2,633,588	+		LRK54_RS11880	0.62	+0.2
2,633,589	-		LRK54_RS11880	0.62	+0.6
2,633,589	-		LRK54_RS11880	0.62	+0.2
2,633,589	-		LRK54_RS11880	0.62	+0.2
2,633,589	-		LRK54_RS11880	0.62	+0.4
2,633,589	-		LRK54_RS11880	0.62	+0.6
2,633,639	+		LRK54_RS11880	0.65	+0.4
2,633,639	+		LRK54_RS11880	0.65	-0.1
2,633,639	+		LRK54_RS11880	0.65	-1.5
2,633,639	+		LRK54_RS11880	0.65	+0.7
2,633,639	+		LRK54_RS11880	0.65	+1.8
2,633,639	+		LRK54_RS11880	0.65	-0.6
2,633,639	+		LRK54_RS11880	0.65	+1.4
2,633,639	+		LRK54_RS11880	0.65	-0.3
2,633,639	+		LRK54_RS11880	0.65	+1.5
2,633,640	-		LRK54_RS11880	0.65	-0.4
2,633,640	-		LRK54_RS11880	0.65	+0.5
2,633,640	-		LRK54_RS11880	0.65	-0.6
2,633,640	-		LRK54_RS11880	0.65	+1.1
2,633,640	-		LRK54_RS11880	0.65	+0.7
2,633,640	-		LRK54_RS11880	0.65	+0.1
2,633,640	-		LRK54_RS11880	0.65	+1.2
2,633,640	-		LRK54_RS11880	0.65	+0.8
2,633,640	-		LRK54_RS11880	0.65	+0.3
2,633,696	+		LRK54_RS11880	0.68	+0.1
2,633,696	+		LRK54_RS11880	0.68	-0.4
2,633,696	+		LRK54_RS11880	0.68	-0.3
2,633,696	+		LRK54_RS11880	0.68	+0.1
2,633,696	+		LRK54_RS11880	0.68	+0.6
2,633,697	-		LRK54_RS11880	0.68	+0.4
2,633,697	-		LRK54_RS11880	0.68	+0.7
2,633,697	-		LRK54_RS11880	0.68	+0.3
2,633,697	-		LRK54_RS11880	0.68	-0.8
2,633,697	-		LRK54_RS11880	0.68	+0.4
2,633,697	-		LRK54_RS11880	0.68	+3.5
2,633,697	-		LRK54_RS11880	0.68	-0.1
2,633,697	-		LRK54_RS11880	0.68	+0.7
2,633,697	-		LRK54_RS11880	0.68	+1.6
2,634,254	+				+0.3
2,634,254	+				+1.3
2,634,254	+				+0.4
2,634,254	+				-0.4
2,634,255	-				+0.2
2,634,255	-				-0.3
2,634,317	+				+0.0
2,634,317	+				-0.2
2,634,317	+				+0.2
2,634,317	+				+0.3
2,634,317	+				+0.2
2,634,317	+				+0.5
2,634,317	+				+0.3
2,634,317	+				+0.3
2,634,317	+				-0.6
2,634,317	+				+0.7
2,634,317	+				+0.8
2,634,317	+				-0.2
2,634,317	+				-0.3
2,634,318	-				+0.0
2,634,318	-				-0.8
2,634,318	-				-1.1
2,634,318	-				+0.5
2,634,318	-				-0.1
2,634,318	-				-0.1
2,634,318	-				+0.1
2,634,318	-				+0.6
2,634,318	-				+0.9
2,634,318	-				-0.6
2,634,318	-				+0.8
2,634,318	-				+0.6
2,634,739	+		LRK54_RS11885	0.24	+0.2
2,634,739	+		LRK54_RS11885	0.24	+0.7
2,634,739	+		LRK54_RS11885	0.24	-0.5
2,634,739	+		LRK54_RS11885	0.24	-1.2
2,634,739	+		LRK54_RS11885	0.24	+1.5
2,634,740	-		LRK54_RS11885	0.24	+0.6
2,634,740	-		LRK54_RS11885	0.24	+0.2
2,634,740	-		LRK54_RS11885	0.24	+0.3
2,634,760	+		LRK54_RS11885	0.26	+0.6
2,634,760	+		LRK54_RS11885	0.26	-0.2
2,634,760	+		LRK54_RS11885	0.26	+0.2
2,634,760	+		LRK54_RS11885	0.26	-2.0
2,634,760	+		LRK54_RS11885	0.26	-0.7
2,634,760	+		LRK54_RS11885	0.26	+0.3
2,634,760	+		LRK54_RS11885	0.26	+1.8
2,634,760	+		LRK54_RS11885	0.26	+0.6
2,634,760	+		LRK54_RS11885	0.26	+0.9
2,634,760	+		LRK54_RS11885	0.26	+0.9
2,634,760	+		LRK54_RS11885	0.26	+0.7
2,634,760	+		LRK54_RS11885	0.26	+0.6
2,634,760	+		LRK54_RS11885	0.26	-0.1
2,634,760	+		LRK54_RS11885	0.26	+2.5
2,634,760	+		LRK54_RS11885	0.26	-1.1
2,634,760	+		LRK54_RS11885	0.26	-0.2
2,634,760	+		LRK54_RS11885	0.26	+0.1
2,634,760	+		LRK54_RS11885	0.26	+0.7
2,634,760	+		LRK54_RS11885	0.26	-0.7
2,634,761	-		LRK54_RS11885	0.26	+1.0
2,634,761	-		LRK54_RS11885	0.26	+0.2
2,634,761	-		LRK54_RS11885	0.26	-0.1
2,634,761	-		LRK54_RS11885	0.26	+0.3
2,634,761	-		LRK54_RS11885	0.26	-0.3
2,634,761	-		LRK54_RS11885	0.26	+0.5
2,634,761	-		LRK54_RS11885	0.26	-0.4
2,634,761	-		LRK54_RS11885	0.26	+0.3
2,634,761	-		LRK54_RS11885	0.26	+0.7
2,634,761	-		LRK54_RS11885	0.26	-0.5
2,634,761	-		LRK54_RS11885	0.26	+0.8
2,634,761	-		LRK54_RS11885	0.26	-0.5
2,634,761	-		LRK54_RS11885	0.26	-0.1
2,634,761	-		LRK54_RS11885	0.26	+1.1
2,634,761	-		LRK54_RS11885	0.26	+0.2
2,634,761	-		LRK54_RS11885	0.26	+0.6
2,634,761	-		LRK54_RS11885	0.26	+0.6
2,634,761	-		LRK54_RS11885	0.26	-1.1
2,634,761	-		LRK54_RS11885	0.26	-0.6
2,634,775	+		LRK54_RS11885	0.27	+1.7
2,634,775	+		LRK54_RS11885	0.27	+0.1
2,634,775	+		LRK54_RS11885	0.27	+0.3
2,634,775	+		LRK54_RS11885	0.27	+0.0
2,634,775	+		LRK54_RS11885	0.27	+1.2
2,634,775	+		LRK54_RS11885	0.27	-0.5
2,634,775	+		LRK54_RS11885	0.27	+0.7
2,634,776	-		LRK54_RS11885	0.27	+0.5
2,634,776	-		LRK54_RS11885	0.27	-0.1
2,634,776	-		LRK54_RS11885	0.27	-1.3
2,634,776	-		LRK54_RS11885	0.27	-0.1
2,634,776	-		LRK54_RS11885	0.27	+0.6
2,634,776	-		LRK54_RS11885	0.27	+1.8
2,634,776	-		LRK54_RS11885	0.27	-0.8
2,634,776	-		LRK54_RS11885	0.27	+0.0
2,634,776	-		LRK54_RS11885	0.27	+0.1
2,634,776	-		LRK54_RS11885	0.27	+0.9
2,634,776	-		LRK54_RS11885	0.27	-0.6
2,634,776	-		LRK54_RS11885	0.27	+0.0
2,634,778	+		LRK54_RS11885	0.27	-1.0
2,634,778	+		LRK54_RS11885	0.27	+0.5
2,634,778	+		LRK54_RS11885	0.27	+1.8
2,634,778	+		LRK54_RS11885	0.27	+0.2
2,634,778	+		LRK54_RS11885	0.27	+0.3
2,634,778	+		LRK54_RS11885	0.27	+0.9
2,634,779	-		LRK54_RS11885	0.27	+0.0
2,634,779	-		LRK54_RS11885	0.27	+0.3
2,634,779	-		LRK54_RS11885	0.27	+0.3
2,634,779	-		LRK54_RS11885	0.27	+0.5
2,634,779	-		LRK54_RS11885	0.27	-1.0
2,634,779	-		LRK54_RS11885	0.27	+0.8
2,634,779	-		LRK54_RS11885	0.27	+0.3
2,634,779	-		LRK54_RS11885	0.27	-0.7
2,634,779	-		LRK54_RS11885	0.27	-0.2
2,634,779	-		LRK54_RS11885	0.27	+0.2
2,634,862	+		LRK54_RS11885	0.32	+0.1
2,634,862	+		LRK54_RS11885	0.32	+0.2
2,634,862	+		LRK54_RS11885	0.32	+1.0
2,634,862	+		LRK54_RS11885	0.32	+0.2
2,634,862	+		LRK54_RS11885	0.32	-0.8
2,634,863	-		LRK54_RS11885	0.32	-2.0
2,634,863	-		LRK54_RS11885	0.32	-0.5
2,634,863	-		LRK54_RS11885	0.32	+0.6
2,634,863	-		LRK54_RS11885	0.32	-0.1
2,634,863	-		LRK54_RS11885	0.32	+1.1
2,634,863	-		LRK54_RS11885	0.32	-1.7
2,634,863	-		LRK54_RS11885	0.32	+0.2
2,634,863	-		LRK54_RS11885	0.32	+0.1
2,634,885	+		LRK54_RS11885	0.33	-0.8
2,634,885	+		LRK54_RS11885	0.33	+0.8
2,634,886	-		LRK54_RS11885	0.33	-0.4
2,634,886	-		LRK54_RS11885	0.33	+0.5
2,634,886	-		LRK54_RS11885	0.33	-0.3
2,634,889	+		LRK54_RS11885	0.33	-0.0
2,634,889	+		LRK54_RS11885	0.33	-0.0
2,634,889	+		LRK54_RS11885	0.33	-0.4
2,634,889	+		LRK54_RS11885	0.33	+0.1
2,634,889	+		LRK54_RS11885	0.33	-1.0
2,634,889	+		LRK54_RS11885	0.33	-0.8
2,634,889	+		LRK54_RS11885	0.33	+1.6
2,634,890	-		LRK54_RS11885	0.34	-0.5
2,634,890	-		LRK54_RS11885	0.34	+1.4
2,634,890	-		LRK54_RS11885	0.34	+0.2
2,634,890	-		LRK54_RS11885	0.34	+0.4
2,634,890	-		LRK54_RS11885	0.34	-2.4
2,634,890	-		LRK54_RS11885	0.34	+0.9
2,634,890	-		LRK54_RS11885	0.34	+0.9
2,634,890	-		LRK54_RS11885	0.34	-1.4
2,634,890	-		LRK54_RS11885	0.34	+0.6
2,635,210	+		LRK54_RS11885	0.53	+0.2
2,635,210	+		LRK54_RS11885	0.53	+0.3
2,635,210	+		LRK54_RS11885	0.53	+0.2
2,635,210	+		LRK54_RS11885	0.53	-0.3
2,635,210	+		LRK54_RS11885	0.53	+0.4
2,635,210	+		LRK54_RS11885	0.53	+1.0
2,635,210	+		LRK54_RS11885	0.53	+0.5
2,635,211	-		LRK54_RS11885	0.53	+0.3
2,635,211	-		LRK54_RS11885	0.53	+1.0
2,635,211	-		LRK54_RS11885	0.53	-0.5
2,635,211	-		LRK54_RS11885	0.53	+0.2
2,635,262	-		LRK54_RS11885	0.56	-1.7
2,635,262	-		LRK54_RS11885	0.56	+0.9
2,635,262	-		LRK54_RS11885	0.56	+1.0
2,635,262	-		LRK54_RS11885	0.56	+1.5
2,635,262	-		LRK54_RS11885	0.56	+0.1
2,635,858	+				+2.5
2,635,858	+				+0.6
2,635,972	+				-0.2
2,635,972	+				+0.2
2,635,972	+				+2.4
2,635,972	+				+0.3
2,635,972	+				+1.6
2,635,973	-				+1.0
2,635,973	-				-0.1
2,635,973	-				+1.2
2,636,044	+				-0.8
2,636,044	+				-0.5
2,636,188	+		LRK54_RS11890	0.28	+0.1
2,636,188	+		LRK54_RS11890	0.28	-0.9
2,636,188	+		LRK54_RS11890	0.28	+1.0
2,636,189	-		LRK54_RS11890	0.28	-2.4
2,636,189	-		LRK54_RS11890	0.28	-0.9
2,636,577	+				+0.1
2,636,577	+				+0.2
2,636,577	+				-0.3
2,636,577	+				+0.5
2,636,577	+				+0.1
2,636,577	+				+0.1
2,636,577	+				+1.0
2,636,577	+				-1.7
2,636,577	+				+0.2
2,636,577	+				+0.2
2,636,577	+				-0.1
2,636,577	+				+0.1
2,636,577	+				-0.2
2,636,577	+				-0.6
2,636,577	+				+1.8
2,636,577	+				-3.0
2,636,577	+				-0.2
2,636,577	+				-0.6
2,636,577	+				+1.1
2,636,577	+				+0.2
2,636,577	+				+0.5
2,636,577	+				-0.1
2,636,577	+				+0.4
2,636,577	+				+2.2
2,636,577	+				-0.2
2,636,577	+				-0.5
2,636,577	+				-0.2
2,636,577	+				-0.0
2,636,577	+				+1.0
2,636,577	+				+0.2
2,636,577	+				+0.5
2,636,578	-				-0.9
2,636,578	-				+0.2
2,636,578	-				+1.5
2,636,578	-				+0.3
2,636,578	-				-0.7
2,636,578	-				+0.5
2,636,578	-				+1.1
2,636,578	-				+1.0
2,636,578	-				-0.0
2,636,578	-				+0.3
2,636,578	-				-0.2
2,636,578	-				+0.4
2,636,578	-				+0.2
2,636,578	-				-0.3
2,636,578	-				-0.4
2,636,578	-				-0.3
2,636,578	-				+0.6
2,636,578	-				-0.4
2,636,578	-				+0.2
2,636,578	-				+0.8
2,636,578	-				+0.2
2,636,578	-				+0.4
2,636,582	+				+1.1
2,636,582	+				+0.3
2,636,582	+				+1.5
2,636,582	+				-0.8
2,636,582	+				-0.3
2,636,582	+				-0.5
2,636,582	+				-1.1
2,636,582	+				+1.4
2,636,582	+				-0.5
2,636,582	+				+0.2
2,636,582	+				-0.5
2,636,582	+				-0.2
2,636,582	+				-0.9
2,636,582	+				-1.0
2,636,582	+				-0.4
2,636,582	+				-0.9
2,636,583	-				-0.5
2,636,583	-				+0.0
2,636,583	-				+0.1
2,636,583	-				+0.6
2,636,583	-				+0.1
2,636,583	-				-0.5
2,636,583	-				+0.2
2,636,583	-				-0.7
2,636,583	-				-0.5
2,636,583	-				-0.2
2,636,583	-				+0.6
2,636,583	-				+0.8
2,636,583	-				+0.4
2,636,583	-				-0.8
2,636,583	-				+1.2
2,636,655	+				-1.4
2,636,656	-				-2.0
2,636,757	+		LRK54_RS11895	0.29	-0.5
2,636,757	+		LRK54_RS11895	0.29	-0.5
2,636,757	+		LRK54_RS11895	0.29	+0.6
2,636,757	+		LRK54_RS11895	0.29	+0.1
2,636,757	+		LRK54_RS11895	0.29	-1.5
2,636,757	+		LRK54_RS11895	0.29	+0.1
2,636,757	+		LRK54_RS11895	0.29	-1.4
2,636,757	+		LRK54_RS11895	0.29	+2.0
2,636,757	+		LRK54_RS11895	0.29	-0.5
2,636,757	+		LRK54_RS11895	0.29	+0.6
2,636,757	+		LRK54_RS11895	0.29	-0.5
2,636,757	+		LRK54_RS11895	0.29	-0.5
2,636,757	+		LRK54_RS11895	0.29	-0.8
2,636,757	+		LRK54_RS11895	0.29	+0.2
2,636,757	+		LRK54_RS11895	0.29	+0.8
2,636,757	+		LRK54_RS11895	0.29	+1.8
2,636,757	+		LRK54_RS11895	0.29	+0.4
2,636,757	+		LRK54_RS11895	0.29	-0.5
2,636,757	+		LRK54_RS11895	0.29	-0.1
2,636,757	+		LRK54_RS11895	0.29	-0.8
2,636,757	+		LRK54_RS11895	0.29	-0.1
2,636,757	+		LRK54_RS11895	0.29	-1.1
2,636,757	+		LRK54_RS11895	0.29	+0.3
2,636,757	+		LRK54_RS11895	0.29	+0.0
2,636,758	-		LRK54_RS11895	0.29	-1.2
2,636,758	-		LRK54_RS11895	0.29	-0.5
2,636,758	-		LRK54_RS11895	0.29	-0.6
2,636,758	-		LRK54_RS11895	0.29	-0.1
2,636,758	-		LRK54_RS11895	0.29	-0.3
2,636,758	-		LRK54_RS11895	0.29	-0.4
2,636,758	-		LRK54_RS11895	0.29	-0.8
2,636,758	-		LRK54_RS11895	0.29	+0.0
2,636,758	-		LRK54_RS11895	0.29	+0.2
2,636,758	-		LRK54_RS11895	0.29	-1.0
2,636,758	-		LRK54_RS11895	0.29	+0.0
2,636,758	-		LRK54_RS11895	0.29	-0.8
2,636,758	-		LRK54_RS11895	0.29	-1.0
2,636,758	-		LRK54_RS11895	0.29	-0.4
2,636,758	-		LRK54_RS11895	0.29	-1.6
2,636,758	-		LRK54_RS11895	0.29	+0.3
2,636,758	-		LRK54_RS11895	0.29	+0.1
2,636,758	-		LRK54_RS11895	0.29	-0.2
2,636,758	-		LRK54_RS11895	0.29	+0.4
2,636,758	-		LRK54_RS11895	0.29	-0.5
2,636,758	-		LRK54_RS11895	0.29	-0.4
2,636,758	-		LRK54_RS11895	0.29	-0.6
2,636,758	-		LRK54_RS11895	0.29	+0.9
2,636,904	+		LRK54_RS11895	0.62	-0.1
2,636,904	+		LRK54_RS11895	0.62	-2.0
2,636,904	+		LRK54_RS11895	0.62	-0.4
2,636,904	+		LRK54_RS11895	0.62	+0.3
2,636,904	+		LRK54_RS11895	0.62	+1.1
2,636,904	+		LRK54_RS11895	0.62	-1.5
2,636,904	+		LRK54_RS11895	0.62	+0.3
2,636,904	+		LRK54_RS11895	0.62	-2.7
2,636,904	+		LRK54_RS11895	0.62	+0.1
2,636,904	+		LRK54_RS11895	0.62	-0.6
2,636,904	+		LRK54_RS11895	0.62	+0.9
2,636,904	+		LRK54_RS11895	0.62	-0.5
2,636,904	+		LRK54_RS11895	0.62	+1.0
2,636,904	+		LRK54_RS11895	0.62	-0.1
2,636,904	+		LRK54_RS11895	0.62	+1.2
2,636,904	+		LRK54_RS11895	0.62	-1.2
2,636,905	-		LRK54_RS11895	0.62	+0.4
2,636,905	-		LRK54_RS11895	0.62	+2.0
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2,636,905	-		LRK54_RS11895	0.62	-0.2
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2,636,905	-		LRK54_RS11895	0.62	-1.2
2,636,905	-		LRK54_RS11895	0.62	+0.1
2,636,905	-		LRK54_RS11895	0.62	-0.4
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2,636,905	-		LRK54_RS11895	0.62	+1.8
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2,636,905	-		LRK54_RS11895	0.62	-0.3
2,636,905	-		LRK54_RS11895	0.62	-1.0