Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11700

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
2,594,564	+		LRK54_RS11695	0.30	+0.3
2,594,564	+		LRK54_RS11695	0.30	-1.8
2,594,564	+		LRK54_RS11695	0.30	+2.2
2,594,564	+		LRK54_RS11695	0.30	+0.6
2,594,564	+		LRK54_RS11695	0.30	+0.8
2,594,564	+		LRK54_RS11695	0.30	+0.3
2,594,564	+		LRK54_RS11695	0.30	-1.8
2,594,564	+		LRK54_RS11695	0.30	+0.3
2,594,565	-		LRK54_RS11695	0.30	-0.3
2,594,565	-		LRK54_RS11695	0.30	+0.1
2,594,565	-		LRK54_RS11695	0.30	-1.5
2,594,565	-		LRK54_RS11695	0.30	-0.4
2,594,565	-		LRK54_RS11695	0.30	-0.3
2,594,565	-		LRK54_RS11695	0.30	+0.4
2,594,565	-		LRK54_RS11695	0.30	+1.0
2,594,565	-		LRK54_RS11695	0.30	-0.1
2,594,565	-		LRK54_RS11695	0.30	-0.2
2,594,565	-		LRK54_RS11695	0.30	+0.2
2,594,565	-		LRK54_RS11695	0.30	-1.1
2,594,565	-		LRK54_RS11695	0.30	+0.9
2,594,565	-		LRK54_RS11695	0.30	-0.6
2,594,565	-		LRK54_RS11695	0.30	-1.6
2,594,702	+		LRK54_RS11695	0.41	-0.4
2,594,702	+		LRK54_RS11695	0.41	+0.4
2,594,702	+		LRK54_RS11695	0.41	+1.0
2,594,702	+		LRK54_RS11695	0.41	-0.7
2,594,702	+		LRK54_RS11695	0.41	+1.8
2,594,702	+		LRK54_RS11695	0.41	-1.0
2,594,702	+		LRK54_RS11695	0.41	-0.5
2,594,702	+		LRK54_RS11695	0.41	+0.6
2,594,702	+		LRK54_RS11695	0.41	-1.2
2,594,702	+		LRK54_RS11695	0.41	+1.8
2,594,703	-		LRK54_RS11695	0.41	+0.5
2,594,703	-		LRK54_RS11695	0.41	-0.2
2,594,703	-		LRK54_RS11695	0.41	+0.5
2,594,703	-		LRK54_RS11695	0.41	-0.9
2,594,703	-		LRK54_RS11695	0.41	+0.5
2,594,703	-		LRK54_RS11695	0.41	+1.6
2,594,703	-		LRK54_RS11695	0.41	-0.5
2,594,703	-		LRK54_RS11695	0.41	+0.7
2,594,703	-		LRK54_RS11695	0.41	+0.2
2,594,703	-		LRK54_RS11695	0.41	-0.1
2,594,703	-		LRK54_RS11695	0.41	+0.2
2,594,703	-		LRK54_RS11695	0.41	-0.1
2,594,703	-		LRK54_RS11695	0.41	-0.0
2,594,703	-		LRK54_RS11695	0.41	-0.0
2,594,703	-		LRK54_RS11695	0.41	-1.4
2,594,703	-		LRK54_RS11695	0.41	+1.2
2,594,703	-		LRK54_RS11695	0.41	-1.1
2,594,703	-		LRK54_RS11695	0.41	-1.4
2,594,703	-		LRK54_RS11695	0.41	-0.3
2,594,804	+		LRK54_RS11695	0.48	-0.7
2,594,804	+		LRK54_RS11695	0.48	+0.6
2,594,804	+		LRK54_RS11695	0.48	-1.0
2,594,805	-		LRK54_RS11695	0.48	-0.1
2,594,805	-		LRK54_RS11695	0.48	+0.4
2,594,805	-		LRK54_RS11695	0.48	+0.2
2,594,805	-		LRK54_RS11695	0.48	-2.0
2,594,805	-		LRK54_RS11695	0.48	+0.1
2,594,906	+		LRK54_RS11695	0.56	+0.3
2,594,906	+		LRK54_RS11695	0.56	+1.5
2,594,906	+		LRK54_RS11695	0.56	-0.0
2,594,906	+		LRK54_RS11695	0.56	-0.2
2,594,907	-		LRK54_RS11695	0.56	+0.5
2,594,907	-		LRK54_RS11695	0.56	-0.1
2,594,907	-		LRK54_RS11695	0.56	-0.1
2,594,907	-		LRK54_RS11695	0.56	-0.9
2,594,978	+		LRK54_RS11695	0.61	+0.8
2,594,978	+		LRK54_RS11695	0.61	-0.9
2,594,978	+		LRK54_RS11695	0.61	-1.9
2,594,978	+		LRK54_RS11695	0.61	+0.2
2,594,978	+		LRK54_RS11695	0.61	-1.1
2,594,978	+		LRK54_RS11695	0.61	+1.5
2,594,978	+		LRK54_RS11695	0.61	+1.2
2,594,979	-		LRK54_RS11695	0.61	+1.8
2,594,979	-		LRK54_RS11695	0.61	+0.9
2,594,979	-		LRK54_RS11695	0.61	-0.6
2,594,979	-		LRK54_RS11695	0.61	+3.5
2,594,979	-		LRK54_RS11695	0.61	+1.9
2,594,979	-		LRK54_RS11695	0.61	-0.2
2,594,979	-		LRK54_RS11695	0.61	-0.4
2,594,979	-		LRK54_RS11695	0.61	-2.6
2,594,979	-		LRK54_RS11695	0.61	+1.3
2,594,979	-		LRK54_RS11695	0.61	-0.6
2,594,979	-		LRK54_RS11695	0.61	+0.1
2,594,979	-		LRK54_RS11695	0.61	+1.4
2,594,979	-		LRK54_RS11695	0.61	+0.6
2,595,021	-		LRK54_RS11695	0.65	+0.3
2,595,021	-		LRK54_RS11695	0.65	+0.0
2,595,021	-		LRK54_RS11695	0.65	-1.5
2,595,044	+		LRK54_RS11695	0.66	-1.0
2,595,044	+		LRK54_RS11695	0.66	+0.1
2,595,044	+		LRK54_RS11695	0.66	+0.1
2,595,044	+		LRK54_RS11695	0.66	+0.3
2,595,044	+		LRK54_RS11695	0.66	-0.6
2,595,044	+		LRK54_RS11695	0.66	-0.1
2,595,044	+		LRK54_RS11695	0.66	-1.0
2,595,044	+		LRK54_RS11695	0.66	+0.2
2,595,044	+		LRK54_RS11695	0.66	-0.3
2,595,044	+		LRK54_RS11695	0.66	+1.0
2,595,044	+		LRK54_RS11695	0.66	-0.1
2,595,044	+		LRK54_RS11695	0.66	+0.0
2,595,044	+		LRK54_RS11695	0.66	-0.5
2,595,044	+		LRK54_RS11695	0.66	+0.2
2,595,044	+		LRK54_RS11695	0.66	+0.0
2,595,044	+		LRK54_RS11695	0.66	-0.0
2,595,044	+		LRK54_RS11695	0.66	-0.5
2,595,044	+		LRK54_RS11695	0.66	+1.0
2,595,044	+		LRK54_RS11695	0.66	+0.3
2,595,044	+		LRK54_RS11695	0.66	+0.1
2,595,044	+		LRK54_RS11695	0.66	-0.2
2,595,044	+		LRK54_RS11695	0.66	-0.5
2,595,044	+		LRK54_RS11695	0.66	+0.3
2,595,044	+		LRK54_RS11695	0.66	-0.8
2,595,044	+		LRK54_RS11695	0.66	+0.4
2,595,044	+		LRK54_RS11695	0.66	-1.8
2,595,045	-		LRK54_RS11695	0.66	-0.8
2,595,045	-		LRK54_RS11695	0.66	-0.5
2,595,045	-		LRK54_RS11695	0.66	+0.2
2,595,045	-		LRK54_RS11695	0.66	-1.3
2,595,045	-		LRK54_RS11695	0.66	-0.8
2,595,045	-		LRK54_RS11695	0.66	-0.9
2,595,045	-		LRK54_RS11695	0.66	-1.0
2,595,045	-		LRK54_RS11695	0.66	+0.0
2,595,045	-		LRK54_RS11695	0.66	+0.5
2,595,045	-		LRK54_RS11695	0.66	-0.0
2,595,045	-		LRK54_RS11695	0.66	-2.4
2,595,045	-		LRK54_RS11695	0.66	-0.1
2,595,045	-		LRK54_RS11695	0.66	+1.0
2,595,045	-		LRK54_RS11695	0.66	+0.0
2,595,045	-		LRK54_RS11695	0.66	+0.1
2,595,045	-		LRK54_RS11695	0.66	+0.0
2,595,045	-		LRK54_RS11695	0.66	-0.8
2,595,045	-		LRK54_RS11695	0.66	-1.7
2,595,045	-		LRK54_RS11695	0.66	+1.8
2,595,045	-		LRK54_RS11695	0.66	-0.8
2,595,045	-		LRK54_RS11695	0.66	+0.0
2,595,045	-		LRK54_RS11695	0.66	+0.4
2,595,045	-		LRK54_RS11695	0.66	-1.1
2,595,045	-		LRK54_RS11695	0.66	-0.1
2,595,206	+		LRK54_RS11695	0.78	-1.3
2,595,215	+		LRK54_RS11695	0.79	+0.2
2,595,215	+		LRK54_RS11695	0.79	-0.9
2,595,215	+		LRK54_RS11695	0.79	-0.6
2,595,215	+		LRK54_RS11695	0.79	-0.8
2,595,216	-		LRK54_RS11695	0.79	-0.3
2,595,216	-		LRK54_RS11695	0.79	+1.9
2,595,216	-		LRK54_RS11695	0.79	-0.4
2,595,216	-		LRK54_RS11695	0.79	+0.8
2,595,338	+		LRK54_RS11695	0.88	+0.1
2,595,338	+		LRK54_RS11695	0.88	+0.6
2,595,338	+		LRK54_RS11695	0.88	-0.1
2,595,338	+		LRK54_RS11695	0.88	+0.2
2,595,338	+		LRK54_RS11695	0.88	+0.3
2,595,338	+		LRK54_RS11695	0.88	+1.4
2,595,338	+		LRK54_RS11695	0.88	-0.2
2,595,338	+		LRK54_RS11695	0.88	-1.4
2,595,338	+		LRK54_RS11695	0.88	+0.3
2,595,338	+		LRK54_RS11695	0.88	-0.1
2,595,338	+		LRK54_RS11695	0.88	+0.4
2,595,338	+		LRK54_RS11695	0.88	-0.6
2,595,338	+		LRK54_RS11695	0.88	+1.3
2,595,338	+		LRK54_RS11695	0.88	-1.0
2,595,338	+		LRK54_RS11695	0.88	-0.6
2,595,338	+		LRK54_RS11695	0.88	-0.9
2,595,338	+		LRK54_RS11695	0.88	+0.9
2,595,338	+		LRK54_RS11695	0.88	-0.0
2,595,339	-		LRK54_RS11695	0.88	+3.2
2,595,339	-		LRK54_RS11695	0.88	+0.1
2,595,339	-		LRK54_RS11695	0.88	-0.2
2,595,339	-		LRK54_RS11695	0.88	-0.6
2,595,339	-		LRK54_RS11695	0.88	+0.4
2,595,339	-		LRK54_RS11695	0.88	+0.3
2,595,339	-		LRK54_RS11695	0.88	-1.2
2,595,339	-		LRK54_RS11695	0.88	-2.4
2,595,339	-		LRK54_RS11695	0.88	+0.5
2,595,339	-		LRK54_RS11695	0.88	+1.2
2,595,339	-		LRK54_RS11695	0.88	-0.9
2,595,339	-		LRK54_RS11695	0.88	+2.2
2,595,339	-		LRK54_RS11695	0.88	+1.0
2,595,339	-		LRK54_RS11695	0.88	-0.5
2,595,339	-		LRK54_RS11695	0.88	+0.5
2,595,339	-		LRK54_RS11695	0.88	-0.9
2,595,339	-		LRK54_RS11695	0.88	+0.2
2,595,339	-		LRK54_RS11695	0.88	+2.2
2,595,525	+				+0.6
2,595,525	+				-0.5
2,595,525	+				-1.8
2,595,525	+				-0.6
2,595,525	+				-0.2
2,595,525	+				-0.1
2,595,525	+				+0.4
2,595,526	-				-0.2
2,595,526	-				+1.5
2,595,526	-				-0.1
2,595,526	-				-0.8
2,595,594	+		LRK54_RS11700	0.50	-0.2
2,595,594	+		LRK54_RS11700	0.50	+1.2
2,595,594	+		LRK54_RS11700	0.50	+0.8
2,595,594	+		LRK54_RS11700	0.50	+1.0
2,595,594	+		LRK54_RS11700	0.50	-0.7
2,595,594	+		LRK54_RS11700	0.50	+1.6
2,595,594	+		LRK54_RS11700	0.50	+1.2
2,595,594	+		LRK54_RS11700	0.50	-0.8
2,595,595	-		LRK54_RS11700	0.50	+1.4
2,595,595	-		LRK54_RS11700	0.50	-0.6
2,595,657	+				+0.2
2,595,657	+				-1.4
2,595,657	+				+1.2
2,595,657	+				-0.4
2,595,657	+				+1.6
2,595,658	-				+0.9
2,595,658	-				-0.3
2,595,658	-				+0.1
2,595,658	-				-0.2
2,595,658	-				-0.6
2,595,658	-				-0.4
2,595,658	-				-1.0
2,595,658	-				+0.2
2,595,658	-				+0.9
2,595,658	-				-0.9
2,595,658	-				-0.4
2,595,658	-				-0.6
2,595,773	+				-0.6
2,595,773	+				-0.2
2,595,845	+				-1.0
2,595,845	+				-1.9
2,595,845	+				+0.2
2,595,845	+				+1.8
2,595,845	+				-0.8
2,595,845	+				+0.5
2,595,845	+				-2.3
2,595,845	+				+0.6
2,595,846	-				-1.4
2,595,846	-				-1.3
2,595,846	-				-2.5
2,595,846	-				-0.1
2,595,846	-				+0.1
2,595,846	-				+1.6
2,595,846	-				+0.2
2,595,868	+				-0.8
2,595,868	+				-2.5
2,595,868	+				-1.1
2,595,868	+				-0.5
2,595,868	+				-0.7
2,595,868	+				-1.1
2,595,868	+				-1.0
2,595,869	-				-0.7
2,595,869	-				-0.2
2,595,869	-				+1.2
2,595,869	-				-0.0
2,595,869	-				-0.1
2,595,869	-				+0.2
2,596,119	-		LRK54_RS11705	0.31	-0.1
2,596,119	-		LRK54_RS11705	0.31	-1.2
2,596,119	-		LRK54_RS11705	0.31	-0.4
2,596,119	-		LRK54_RS11705	0.31	+2.2
2,596,166	+		LRK54_RS11705	0.35	-1.4
2,596,166	+		LRK54_RS11705	0.35	+1.2
2,596,166	+				+2.2
2,596,166	+		LRK54_RS11705	0.35	-0.5
2,596,166	+		LRK54_RS11705	0.35	+0.5
2,596,166	+		LRK54_RS11705	0.35	+1.0
2,596,166	+		LRK54_RS11705	0.35	+0.3
2,596,166	+		LRK54_RS11705	0.35	-0.3
2,596,166	+		LRK54_RS11705	0.35	-0.1
2,596,167	-		LRK54_RS11705	0.35	-0.1
2,596,167	-		LRK54_RS11705	0.35	-2.6
2,596,167	-		LRK54_RS11705	0.35	-0.9
2,596,167	-		LRK54_RS11705	0.35	+1.2
2,596,167	-		LRK54_RS11705	0.35	+1.2
2,596,167	-		LRK54_RS11705	0.35	-0.7
2,596,167	-		LRK54_RS11705	0.35	+0.3
2,596,167	-		LRK54_RS11705	0.35	+0.0
2,596,167	-		LRK54_RS11705	0.35	+1.3
2,596,167	-		LRK54_RS11705	0.35	+1.5
2,596,167	-		LRK54_RS11705	0.35	-1.1
2,596,167	-		LRK54_RS11705	0.35	-0.8
2,596,167	-		LRK54_RS11705	0.35	+0.3
2,596,167	-		LRK54_RS11705	0.35	+0.0
2,596,214	+		LRK54_RS11705	0.39	-0.1
2,596,256	+		LRK54_RS11705	0.43	-0.1
2,596,256	+		LRK54_RS11705	0.43	-0.6
2,596,256	+		LRK54_RS11705	0.43	-0.3
2,596,256	+		LRK54_RS11705	0.43	-1.0
2,596,256	+		LRK54_RS11705	0.43	-0.4
2,596,256	+		LRK54_RS11705	0.43	-0.1
2,596,256	+		LRK54_RS11705	0.43	+0.0
2,596,256	+		LRK54_RS11705	0.43	+1.5
2,596,256	+		LRK54_RS11705	0.43	+0.6
2,596,256	+		LRK54_RS11705	0.43	+0.8
2,596,256	+		LRK54_RS11705	0.43	+0.5
2,596,256	+		LRK54_RS11705	0.43	-1.4
2,596,256	+		LRK54_RS11705	0.43	-1.3
2,596,256	+		LRK54_RS11705	0.43	-2.7
2,596,256	+		LRK54_RS11705	0.43	-0.8
2,596,256	+		LRK54_RS11705	0.43	-1.6
2,596,256	+		LRK54_RS11705	0.43	+0.9
2,596,256	+		LRK54_RS11705	0.43	-0.1
2,596,256	+		LRK54_RS11705	0.43	-1.0
2,596,256	+		LRK54_RS11705	0.43	-0.4
2,596,256	+		LRK54_RS11705	0.43	+1.0
2,596,257	-		LRK54_RS11705	0.43	-0.3
2,596,257	-		LRK54_RS11705	0.43	+0.2
2,596,257	-		LRK54_RS11705	0.43	-1.1
2,596,257	-		LRK54_RS11705	0.43	-0.3
2,596,257	-		LRK54_RS11705	0.43	+1.2
2,596,257	-		LRK54_RS11705	0.43	+1.1
2,596,257	-		LRK54_RS11705	0.43	+0.6
2,596,257	-		LRK54_RS11705	0.43	+1.3
2,596,257	-		LRK54_RS11705	0.43	-0.2
2,596,257	-		LRK54_RS11705	0.43	-0.6
2,596,257	-		LRK54_RS11705	0.43	-0.7
2,596,257	-		LRK54_RS11705	0.43	+0.2
2,596,257	-		LRK54_RS11705	0.43	-0.0
2,596,257	-		LRK54_RS11705	0.43	+1.2
2,596,257	-		LRK54_RS11705	0.43	-1.3
2,596,257	-		LRK54_RS11705	0.43	-1.7
2,596,257	-		LRK54_RS11705	0.43	+0.2
2,596,257	-		LRK54_RS11705	0.43	-1.0
2,596,257	-		LRK54_RS11705	0.43	-0.7
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2,596,664	+		LRK54_RS11705	0.79	+2.5