Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11040

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
2,445,818	+		LRK54_RS11035	0.39	+0.5
2,445,819	-		LRK54_RS11035	0.39	+0.7
2,445,819	-		LRK54_RS11035	0.39	+0.2
2,445,819	-		LRK54_RS11035	0.39	+0.2
2,445,819	-		LRK54_RS11035	0.39	-1.8
2,445,819	-		LRK54_RS11035	0.39	-0.1
2,445,846	-		LRK54_RS11035	0.41	-0.7
2,445,846	-		LRK54_RS11035	0.41	-0.1
2,445,860	+		LRK54_RS11035	0.42	-0.8
2,445,860	+		LRK54_RS11035	0.42	-0.4
2,445,860	+		LRK54_RS11035	0.42	-0.8
2,445,860	+		LRK54_RS11035	0.42	+0.5
2,445,860	+		LRK54_RS11035	0.42	+0.2
2,445,860	+		LRK54_RS11035	0.42	-0.0
2,445,860	+		LRK54_RS11035	0.42	+0.7
2,445,861	-		LRK54_RS11035	0.42	+1.1
2,445,861	-		LRK54_RS11035	0.42	-1.4
2,445,861	-		LRK54_RS11035	0.42	-0.0
2,445,861	-		LRK54_RS11035	0.42	+0.2
2,445,887	+		LRK54_RS11035	0.44	-0.4
2,445,887	+		LRK54_RS11035	0.44	-1.5
2,445,887	+		LRK54_RS11035	0.44	-0.0
2,445,887	+		LRK54_RS11035	0.44	+0.0
2,445,887	+		LRK54_RS11035	0.44	-0.3
2,445,887	+		LRK54_RS11035	0.44	-1.7
2,445,887	+		LRK54_RS11035	0.44	-1.6
2,445,887	+		LRK54_RS11035	0.44	+0.3
2,445,887	+		LRK54_RS11035	0.44	+0.2
2,445,887	+		LRK54_RS11035	0.44	-0.7
2,445,887	+		LRK54_RS11035	0.44	+0.2
2,445,887	+		LRK54_RS11035	0.44	+0.9
2,445,887	+		LRK54_RS11035	0.44	+0.6
2,445,887	+		LRK54_RS11035	0.44	+0.8
2,445,888	-		LRK54_RS11035	0.44	-0.9
2,445,888	-		LRK54_RS11035	0.44	+0.6
2,445,888	-		LRK54_RS11035	0.44	-0.5
2,445,888	-		LRK54_RS11035	0.44	-0.1
2,445,888	-		LRK54_RS11035	0.44	+0.8
2,445,888	-		LRK54_RS11035	0.44	-0.9
2,445,888	-		LRK54_RS11035	0.44	-0.4
2,445,888	-		LRK54_RS11035	0.44	+0.1
2,445,888	-		LRK54_RS11035	0.44	-0.4
2,445,888	-		LRK54_RS11035	0.44	-0.2
2,445,888	-		LRK54_RS11035	0.44	+0.0
2,445,888	-		LRK54_RS11035	0.44	-1.1
2,445,888	-		LRK54_RS11035	0.44	-0.0
2,445,888	-		LRK54_RS11035	0.44	-0.3
2,445,888	-		LRK54_RS11035	0.44	-0.0
2,445,888	-		LRK54_RS11035	0.44	-2.2
2,445,888	-		LRK54_RS11035	0.44	-1.7
2,445,888	-		LRK54_RS11035	0.44	-0.4
2,445,888	-		LRK54_RS11035	0.44	-0.8
2,445,888	-		LRK54_RS11035	0.44	+0.1
2,445,899	+		LRK54_RS11035	0.45	-0.3
2,445,899	+		LRK54_RS11035	0.45	-0.6
2,445,899	+		LRK54_RS11035	0.45	+0.6
2,445,899	+		LRK54_RS11035	0.45	-0.0
2,445,899	+		LRK54_RS11035	0.45	+0.6
2,445,900	-		LRK54_RS11035	0.45	+0.2
2,445,900	-		LRK54_RS11035	0.45	-0.1
2,445,900	-		LRK54_RS11035	0.45	-0.9
2,445,900	-		LRK54_RS11035	0.45	-0.7
2,445,900	-		LRK54_RS11035	0.45	-0.5
2,445,900	-		LRK54_RS11035	0.45	+0.0
2,445,916	+		LRK54_RS11035	0.46	-0.4
2,445,916	+		LRK54_RS11035	0.46	+0.2
2,445,917	-		LRK54_RS11035	0.46	+0.5
2,446,046	+		LRK54_RS11035	0.56	+0.7
2,446,046	+		LRK54_RS11035	0.56	-0.5
2,446,046	+		LRK54_RS11035	0.56	-0.8
2,446,046	+		LRK54_RS11035	0.56	-1.1
2,446,046	+		LRK54_RS11035	0.56	-0.1
2,446,047	-		LRK54_RS11035	0.57	-0.1
2,446,168	+		LRK54_RS11035	0.66	+0.6
2,446,168	+		LRK54_RS11035	0.66	-0.5
2,446,168	+		LRK54_RS11035	0.66	+1.2
2,446,169	-		LRK54_RS11035	0.66	-0.8
2,446,169	-		LRK54_RS11035	0.66	+0.9
2,446,169	-		LRK54_RS11035	0.66	+0.2
2,446,217	+		LRK54_RS11035	0.70	+1.2
2,446,217	+		LRK54_RS11035	0.70	-0.7
2,446,217	+		LRK54_RS11035	0.70	-0.4
2,446,217	+		LRK54_RS11035	0.70	-0.5
2,446,217	+		LRK54_RS11035	0.70	-0.5
2,446,217	+		LRK54_RS11035	0.70	+1.0
2,446,217	+		LRK54_RS11035	0.70	-0.6
2,446,217	+		LRK54_RS11035	0.70	+0.9
2,446,217	+		LRK54_RS11035	0.70	+0.5
2,446,217	+		LRK54_RS11035	0.70	+0.4
2,446,217	+		LRK54_RS11035	0.70	-0.5
2,446,218	-		LRK54_RS11035	0.70	-1.3
2,446,218	-		LRK54_RS11035	0.70	+1.4
2,446,218	-		LRK54_RS11035	0.70	+0.2
2,446,218	-		LRK54_RS11035	0.70	+0.7
2,446,218	-		LRK54_RS11035	0.70	-0.5
2,446,218	-		LRK54_RS11035	0.70	-0.2
2,446,218	-		LRK54_RS11035	0.70	+0.4
2,446,218	-		LRK54_RS11035	0.70	+2.2
2,446,218	-		LRK54_RS11035	0.70	+0.9
2,446,218	-		LRK54_RS11035	0.70	+0.2
2,446,218	-		LRK54_RS11035	0.70	-0.5
2,446,218	-		LRK54_RS11035	0.70	+0.1
2,446,547	+				-1.0
2,446,547	+				+1.4
2,446,547	+				-1.3
2,446,547	+				+1.8
2,446,547	+				-0.4
2,446,547	+				-1.7
2,446,547	+				-1.7
2,446,547	+				-1.2
2,446,547	+				-0.9
2,446,547	+				-1.1
2,446,547	+				-2.4
2,446,547	+				-1.1
2,446,547	+				+0.1
2,446,547	+				-0.7
2,446,547	+				-3.2
2,446,547	+				-0.2
2,446,547	+				-1.0
2,446,548	-				+0.7
2,446,548	-				-0.5
2,446,548	-				+0.9
2,446,548	-				+0.1
2,446,548	-				-1.7
2,446,548	-				-1.4
2,446,548	-				-0.5
2,446,548	-				+0.5
2,446,548	-				+0.6
2,446,548	-				-0.7
2,446,548	-				-1.4
2,446,548	-				-0.5
2,446,548	-				-0.2
2,446,548	-				-0.1
2,446,548	-				+1.2
2,446,548	-				-0.6
2,446,548	-				+0.5
2,446,548	-				+0.2
2,446,548	-				-0.7
2,446,548	-				+0.7
2,446,548	-				-0.2
2,446,548	-				+0.6
2,446,548	-				+1.6
2,446,548	-				+0.1
2,446,548	-				+0.1
2,446,548	-				+0.1
2,446,548	-				-0.2
2,446,548	-				-0.2
2,446,548	-				+0.6
2,446,548	-				+1.5
2,446,636	+				-0.6
2,446,757	-				+0.1
2,446,757	-				+1.0
2,446,757	-				-1.7
2,446,987	+		LRK54_RS11040	0.11	-0.8
2,446,988	-		LRK54_RS11040	0.11	-0.3
2,446,988	-		LRK54_RS11040	0.11	+1.0
2,446,988	-		LRK54_RS11040	0.11	+0.1
2,447,089	+		LRK54_RS11040	0.17	-0.8
2,447,089	+		LRK54_RS11040	0.17	+0.2
2,447,089	+		LRK54_RS11040	0.17	-0.6
2,447,089	+		LRK54_RS11040	0.17	+0.5
2,447,089	+		LRK54_RS11040	0.17	-3.0
2,447,089	+		LRK54_RS11040	0.17	-1.2
2,447,090	-		LRK54_RS11040	0.17	+0.1
2,447,090	-		LRK54_RS11040	0.17	+2.8
2,447,090	-		LRK54_RS11040	0.17	-0.2
2,447,090	-		LRK54_RS11040	0.17	+0.0
2,447,173	+		LRK54_RS11040	0.22	-1.4
2,447,173	+		LRK54_RS11040	0.22	+0.0
2,447,173	+		LRK54_RS11040	0.22	+0.1
2,447,173	+		LRK54_RS11040	0.22	-0.4
2,447,173	+		LRK54_RS11040	0.22	+0.0
2,447,173	+		LRK54_RS11040	0.22	+0.2
2,447,173	+		LRK54_RS11040	0.22	+0.5
2,447,173	+		LRK54_RS11040	0.22	-0.2
2,447,173	+		LRK54_RS11040	0.22	+0.3
2,447,174	-		LRK54_RS11040	0.22	-0.1
2,447,174	-		LRK54_RS11040	0.22	+0.3
2,447,174	-		LRK54_RS11040	0.22	+0.2
2,447,174	-		LRK54_RS11040	0.22	+0.2
2,447,174	-		LRK54_RS11040	0.22	+1.2
2,447,174	-		LRK54_RS11040	0.22	-0.5
2,447,174	-		LRK54_RS11040	0.22	-0.7
2,447,174	-		LRK54_RS11040	0.22	+1.0
2,447,174	-		LRK54_RS11040	0.22	-1.1
2,447,174	-		LRK54_RS11040	0.22	-0.2
2,447,174	-		LRK54_RS11040	0.22	-0.3
2,447,251	+		LRK54_RS11040	0.27	-0.3
2,447,251	+		LRK54_RS11040	0.27	+2.2
2,447,314	+		LRK54_RS11040	0.30	-1.8
2,447,314	+		LRK54_RS11040	0.30	-0.5
2,447,314	+		LRK54_RS11040	0.30	-0.1
2,447,314	+		LRK54_RS11040	0.30	-2.0
2,447,314	+		LRK54_RS11040	0.30	+0.1
2,447,314	+		LRK54_RS11040	0.30	+0.1
2,447,314	+		LRK54_RS11040	0.30	-0.6
2,447,314	+		LRK54_RS11040	0.30	-0.4
2,447,314	+		LRK54_RS11040	0.30	-1.0
2,447,314	+		LRK54_RS11040	0.30	-1.1
2,447,314	+		LRK54_RS11040	0.30	-0.3
2,447,314	+		LRK54_RS11040	0.30	-1.5
2,447,314	+		LRK54_RS11040	0.30	-0.7
2,447,314	+		LRK54_RS11040	0.30	-0.5
2,447,314	+		LRK54_RS11040	0.30	-0.1
2,447,315	-		LRK54_RS11040	0.30	+0.6
2,447,315	-		LRK54_RS11040	0.30	-0.3
2,447,315	-		LRK54_RS11040	0.30	+1.2
2,447,315	-		LRK54_RS11040	0.30	+0.0
2,447,315	-		LRK54_RS11040	0.30	+0.3
2,447,315	-		LRK54_RS11040	0.30	+0.6
2,447,315	-		LRK54_RS11040	0.30	-0.0
2,447,315	-		LRK54_RS11040	0.30	-1.4
2,447,315	-		LRK54_RS11040	0.30	+0.6
2,447,315	-		LRK54_RS11040	0.30	-0.5
2,447,315	-		LRK54_RS11040	0.30	-0.2
2,447,315	-		LRK54_RS11040	0.30	+0.1
2,447,315	-		LRK54_RS11040	0.30	-0.1
2,447,315	-		LRK54_RS11040	0.30	+0.2
2,447,315	-		LRK54_RS11040	0.30	+0.3
2,447,315	-		LRK54_RS11040	0.30	+1.2
2,447,315	-		LRK54_RS11040	0.30	+0.6
2,447,315	-		LRK54_RS11040	0.30	+0.6
2,447,315	-		LRK54_RS11040	0.30	+1.1
2,447,315	-		LRK54_RS11040	0.30	-0.1
2,447,362	+		LRK54_RS11040	0.33	-0.4
2,447,362	+		LRK54_RS11040	0.33	-1.9
2,447,362	+		LRK54_RS11040	0.33	-0.1
2,447,363	-		LRK54_RS11040	0.33	+1.6
2,447,363	-		LRK54_RS11040	0.33	+0.6
2,447,374	+		LRK54_RS11040	0.34	+0.4
2,447,374	+		LRK54_RS11040	0.34	+0.3
2,447,374	+		LRK54_RS11040	0.34	+2.2
2,447,374	+		LRK54_RS11040	0.34	-0.9
2,447,374	+		LRK54_RS11040	0.34	+0.6
2,447,374	+		LRK54_RS11040	0.34	-0.1
2,447,374	+		LRK54_RS11040	0.34	-0.6
2,447,374	+		LRK54_RS11040	0.34	-0.8
2,447,375	-		LRK54_RS11040	0.34	-1.2
2,447,375	-		LRK54_RS11040	0.34	-1.4
2,447,375	-		LRK54_RS11040	0.34	-1.0
2,447,375	-		LRK54_RS11040	0.34	+1.6
2,447,375	-		LRK54_RS11040	0.34	-0.6
2,447,375	-		LRK54_RS11040	0.34	-0.0
2,447,375	-		LRK54_RS11040	0.34	-0.4
2,447,375	-		LRK54_RS11040	0.34	-1.5
2,447,375	-		LRK54_RS11040	0.34	-0.8
2,447,375	-		LRK54_RS11040	0.34	-0.4
2,447,452	+		LRK54_RS11040	0.38	+0.6
2,447,452	+		LRK54_RS11040	0.38	-1.4
2,447,452	+		LRK54_RS11040	0.38	+1.1
2,447,452	+		LRK54_RS11040	0.38	-0.4
2,447,452	+		LRK54_RS11040	0.38	-0.5
2,447,452	+		LRK54_RS11040	0.38	-1.7
2,447,452	+		LRK54_RS11040	0.38	-0.1
2,447,452	+		LRK54_RS11040	0.38	-1.4
2,447,452	+		LRK54_RS11040	0.38	+0.6
2,447,452	+		LRK54_RS11040	0.38	-1.7
2,447,452	+		LRK54_RS11040	0.38	-0.4
2,447,452	+		LRK54_RS11040	0.38	-0.0
2,447,452	+		LRK54_RS11040	0.38	-0.8
2,447,452	+		LRK54_RS11040	0.38	-0.7
2,447,452	+		LRK54_RS11040	0.38	+0.0
2,447,453	-		LRK54_RS11040	0.38	-0.3
2,447,453	-		LRK54_RS11040	0.38	-0.2
2,447,453	-		LRK54_RS11040	0.38	+0.2
2,447,453	-		LRK54_RS11040	0.38	+0.2
2,447,453	-		LRK54_RS11040	0.38	-0.4
2,447,453	-		LRK54_RS11040	0.38	-0.9
2,447,453	-		LRK54_RS11040	0.38	-0.8
2,447,453	-		LRK54_RS11040	0.38	+0.0
2,447,453	-		LRK54_RS11040	0.38	-0.4
2,447,453	-		LRK54_RS11040	0.38	+0.1
2,447,453	-		LRK54_RS11040	0.38	+0.3
2,447,453	-		LRK54_RS11040	0.38	+0.4
2,447,453	-		LRK54_RS11040	0.38	-1.2
2,447,453	-		LRK54_RS11040	0.38	-1.9
2,447,453	-		LRK54_RS11040	0.38	-0.2
2,447,453	-		LRK54_RS11040	0.38	-1.6
2,447,453	-		LRK54_RS11040	0.38	-1.0
2,447,453	-		LRK54_RS11040	0.38	+2.2
2,447,453	-		LRK54_RS11040	0.38	-1.9
2,447,453	-		LRK54_RS11040	0.38	+0.6
2,447,491	+		LRK54_RS11040	0.41	+0.8
2,447,491	+		LRK54_RS11040	0.41	-0.8
2,447,491	+		LRK54_RS11040	0.41	+1.6
2,447,492	-		LRK54_RS11040	0.41	-0.5
2,447,492	-		LRK54_RS11040	0.41	+0.5
2,447,566	+		LRK54_RS11040	0.45	-0.6
2,447,566	+		LRK54_RS11040	0.45	-0.1
2,447,566	+		LRK54_RS11040	0.45	-0.2
2,447,566	+		LRK54_RS11040	0.45	-1.1
2,447,566	+		LRK54_RS11040	0.45	-0.3
2,447,566	+		LRK54_RS11040	0.45	-0.4
2,447,566	+		LRK54_RS11040	0.45	-0.3
2,447,566	+		LRK54_RS11040	0.45	+0.3
2,447,566	+		LRK54_RS11040	0.45	-0.9
2,447,566	+		LRK54_RS11040	0.45	-0.1
2,447,566	+		LRK54_RS11040	0.45	+0.5
2,447,566	+		LRK54_RS11040	0.45	-1.0
2,447,566	+		LRK54_RS11040	0.45	-0.4
2,447,566	+		LRK54_RS11040	0.45	-1.4
2,447,566	+		LRK54_RS11040	0.45	-1.6
2,447,566	+		LRK54_RS11040	0.45	+0.5
2,447,566	+		LRK54_RS11040	0.45	+0.5
2,447,566	+		LRK54_RS11040	0.45	-1.2
2,447,566	+		LRK54_RS11040	0.45	-0.1
2,447,566	+		LRK54_RS11040	0.45	-0.4
2,447,566	+		LRK54_RS11040	0.45	-0.3
2,447,566	+		LRK54_RS11040	0.45	+1.8
2,447,566	+		LRK54_RS11040	0.45	-0.8
2,447,566	+		LRK54_RS11040	0.45	-1.0
2,447,566	+		LRK54_RS11040	0.45	+0.7
2,447,566	+		LRK54_RS11040	0.45	-0.1
2,447,566	+		LRK54_RS11040	0.45	+1.4
2,447,566	+		LRK54_RS11040	0.45	+1.4
2,447,566	+		LRK54_RS11040	0.45	-2.4
2,447,567	-		LRK54_RS11040	0.45	+0.0
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2,447,567	-		LRK54_RS11040	0.45	-0.1
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2,447,704	+		LRK54_RS11040	0.53	-0.1
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2,447,704	+		LRK54_RS11040	0.53	-1.1
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2,448,097	+		LRK54_RS11040	0.76	-0.1
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2,448,097	+		LRK54_RS11040	0.76	+0.1
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2,448,097	+		LRK54_RS11040	0.76	-0.1
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2,448,097	+		LRK54_RS11040	0.76	+0.0
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2,448,098	-		LRK54_RS11040	0.76	-1.1
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2,448,158	-		LRK54_RS11040	0.79	-1.1
2,448,158	-		LRK54_RS11040	0.79	+1.2
2,448,158	-		LRK54_RS11040	0.79	+2.2
2,448,158	-		LRK54_RS11040	0.79	+0.1
2,448,158	-		LRK54_RS11040	0.79	+0.2
2,448,158	-		LRK54_RS11040	0.79	-0.4
2,448,158	-		LRK54_RS11040	0.79	+0.2
2,448,158	-		LRK54_RS11040	0.79	+0.4
2,448,158	-		LRK54_RS11040	0.79	+0.0
2,448,158	-		LRK54_RS11040	0.79	-0.2
2,448,158	-		LRK54_RS11040	0.79	-0.7
2,448,158	-		LRK54_RS11040	0.79	-0.2
2,448,158	-		LRK54_RS11040	0.79	-0.4
2,448,158	-		LRK54_RS11040	0.79	+0.2
2,448,158	-		LRK54_RS11040	0.79	-1.2
2,448,158	-		LRK54_RS11040	0.79	-1.4
2,448,191	+		LRK54_RS11040	0.81	+0.8
2,448,191	+		LRK54_RS11040	0.81	+0.8
2,448,191	+		LRK54_RS11040	0.81	+0.8
2,448,192	-		LRK54_RS11040	0.81	-0.8
2,448,192	-		LRK54_RS11040	0.81	-0.2
2,448,192	-		LRK54_RS11040	0.81	-1.9
2,448,373	+				-0.4
2,448,373	+				+0.4
2,448,373	+				-0.4
2,448,373	+				-0.4
2,448,373	+				-0.1
2,448,373	+				+1.0
2,448,373	+				-0.0
2,448,373	+				+0.5
2,448,373	+				-0.2
2,448,374	-				-0.1
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2,448,374	-				+0.9
2,448,374	-				-0.4
2,448,374	-				+0.8
2,448,374	-				+0.2
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2,448,374	-				-0.5
2,448,459	+				-0.0
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2,448,459	+				+0.8
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2,448,663	+		LRK54_RS11045	0.16	-1.2
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2,448,663	+		LRK54_RS11045	0.16	+0.5
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2,449,146	+		LRK54_RS11045	0.73	+0.0
2,449,146	+		LRK54_RS11045	0.73	+0.6
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2,449,146	+		LRK54_RS11045	0.73	-1.0
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2,449,153	-		LRK54_RS11045	0.74	-0.1