Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10855

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
2,399,070	+				+0.5
2,399,070	+				+0.3
2,399,070	+				+0.2
2,399,070	+				-0.2
2,399,070	+				-0.1
2,399,070	+				+1.6
2,399,070	+				-0.2
2,399,070	+				-0.0
2,399,070	+				+0.3
2,399,071	-				-0.5
2,399,071	-				+0.1
2,399,071	-				-0.1
2,399,071	-				-0.4
2,399,071	-				+0.1
2,399,251	+				-0.3
2,399,252	-				-0.6
2,399,377	+		LRK54_RS10845	0.13	-1.4
2,399,377	+		LRK54_RS10845	0.13	-0.1
2,399,377	+		LRK54_RS10845	0.13	-1.4
2,399,377	+		LRK54_RS10845	0.13	-0.3
2,399,377	+		LRK54_RS10845	0.13	+1.2
2,399,377	+		LRK54_RS10845	0.13	+0.8
2,399,377	+		LRK54_RS10845	0.13	-0.6
2,399,377	+		LRK54_RS10845	0.13	-2.0
2,399,377	+		LRK54_RS10845	0.13	+0.6
2,399,377	+		LRK54_RS10845	0.13	-0.2
2,399,378	-		LRK54_RS10845	0.14	+0.2
2,399,378	-		LRK54_RS10845	0.14	-0.6
2,399,378	-		LRK54_RS10845	0.14	-1.1
2,399,378	-		LRK54_RS10845	0.14	-0.9
2,399,378	-		LRK54_RS10845	0.14	-1.8
2,399,378	-		LRK54_RS10845	0.14	-1.2
2,399,378	-		LRK54_RS10845	0.14	-1.4
2,399,378	-		LRK54_RS10845	0.14	-0.6
2,399,378	-		LRK54_RS10845	0.14	-1.4
2,399,407	+		LRK54_RS10845	0.31	+0.1
2,399,407	+		LRK54_RS10845	0.31	+0.2
2,399,407	+		LRK54_RS10845	0.31	+0.1
2,399,407	+		LRK54_RS10845	0.31	+0.5
2,399,407	+		LRK54_RS10845	0.31	-1.9
2,399,407	+		LRK54_RS10845	0.31	+1.1
2,399,407	+		LRK54_RS10845	0.31	+1.7
2,399,408	-		LRK54_RS10845	0.32	-0.4
2,399,408	-		LRK54_RS10845	0.32	-0.0
2,399,408	-		LRK54_RS10845	0.32	-1.4
2,399,408	-		LRK54_RS10845	0.32	+0.2
2,399,408	-		LRK54_RS10845	0.32	+0.2
2,399,408	-		LRK54_RS10845	0.32	-1.7
2,399,408	-		LRK54_RS10845	0.32	-1.9
2,399,461	+		LRK54_RS10845	0.63	-0.1
2,399,461	+		LRK54_RS10845	0.63	-0.8
2,399,461	+		LRK54_RS10845	0.63	-0.3
2,399,461	+		LRK54_RS10845	0.63	-0.1
2,399,461	+		LRK54_RS10845	0.63	-1.2
2,399,461	+		LRK54_RS10845	0.63	-1.9
2,399,461	+		LRK54_RS10845	0.63	-0.6
2,399,461	+		LRK54_RS10845	0.63	-1.2
2,399,461	+		LRK54_RS10845	0.63	+0.5
2,399,461	+		LRK54_RS10845	0.63	-0.6
2,399,461	+		LRK54_RS10845	0.63	-0.8
2,399,462	-		LRK54_RS10845	0.64	-0.4
2,399,462	-		LRK54_RS10845	0.64	+0.1
2,399,462	-		LRK54_RS10845	0.64	+0.3
2,399,462	-		LRK54_RS10845	0.64	-0.7
2,399,462	-		LRK54_RS10845	0.64	-1.8
2,399,462	-		LRK54_RS10845	0.64	-1.9
2,399,462	-		LRK54_RS10845	0.64	+1.6
2,399,462	-		LRK54_RS10845	0.64	-0.6
2,399,462	-		LRK54_RS10845	0.64	-2.2
2,399,462	-		LRK54_RS10845	0.64	-0.2
2,399,462	-		LRK54_RS10845	0.64	-0.4
2,399,462	-		LRK54_RS10845	0.64	-1.2
2,399,517	-				-1.2
2,399,517	-				-1.7
2,399,792	-				-1.6
2,400,013	+				+0.5
2,400,013	+				-0.9
2,400,013	+				+0.4
2,400,013	+				-0.5
2,400,013	+				+0.2
2,400,013	+				-0.4
2,400,013	+				+0.5
2,400,013	+				-0.6
2,400,013	+				+0.0
2,400,013	+				-1.4
2,400,013	+				-0.1
2,400,013	+				-0.2
2,400,013	+				-0.8
2,400,013	+				-0.7
2,400,013	+				+0.6
2,400,013	+				+0.3
2,400,013	+				+0.1
2,400,013	+				-0.4
2,400,013	+				+0.4
2,400,013	+				+0.8
2,400,013	+				-1.8
2,400,013	+				+0.5
2,400,013	+				-0.9
2,400,013	+				-0.3
2,400,013	+				+1.2
2,400,013	+				-1.4
2,400,013	+				-0.1
2,400,013	+				+1.4
2,400,013	+				-0.2
2,400,013	+				-0.9
2,400,013	+				+0.4
2,400,013	+				-0.4
2,400,013	+				-0.3
2,400,013	+				+1.5
2,400,013	+				+0.9
2,400,013	+				-0.1
2,400,013	+				-0.1
2,400,013	+				+0.2
2,400,013	+				-0.3
2,400,013	+				-1.6
2,400,013	+				+2.2
2,400,013	+				-0.4
2,400,013	+				-0.1
2,400,013	+				+0.1
2,400,013	+				+1.2
2,400,013	+				-0.3
2,400,013	+				-0.7
2,400,013	+				-1.2
2,400,013	+				-0.2
2,400,013	+				-0.4
2,400,013	+				-1.3
2,400,013	+				-1.6
2,400,013	+				-0.0
2,400,013	+				-1.2
2,400,013	+				-1.0
2,400,013	+				-0.2
2,400,013	+				+0.5
2,400,013	+				-0.5
2,400,013	+				+0.1
2,400,013	+				+0.7
2,400,013	+				-0.9
2,400,013	+				-0.4
2,400,013	+				-0.4
2,400,013	+				-1.1
2,400,014	-				-0.1
2,400,014	-				+0.2
2,400,036	+				+0.0
2,400,036	+				+0.0
2,400,036	+				+0.4
2,400,036	+				-0.8
2,400,036	+				-0.0
2,400,138	+		LRK54_RS10855	0.14	-0.4
2,400,138	+		LRK54_RS10855	0.14	-2.5
2,400,138	+		LRK54_RS10855	0.14	-2.7
2,400,138	+		LRK54_RS10855	0.14	-0.1
2,400,264	+		LRK54_RS10855	0.39	-0.6
2,400,264	+		LRK54_RS10855	0.39	-0.6
2,400,264	+		LRK54_RS10855	0.39	+0.2
2,400,264	+		LRK54_RS10855	0.39	-0.9
2,400,264	+		LRK54_RS10855	0.39	-1.7
2,400,264	+		LRK54_RS10855	0.39	-1.4
2,400,318	+		LRK54_RS10855	0.50	-1.1
2,400,318	+		LRK54_RS10855	0.50	-0.2
2,400,399	+		LRK54_RS10855	0.66	-0.1
2,400,399	+		LRK54_RS10855	0.66	+0.2
2,400,399	+		LRK54_RS10855	0.66	-0.6
2,400,399	+		LRK54_RS10855	0.66	-1.5
2,400,399	+		LRK54_RS10855	0.66	-1.9
2,400,423	+		LRK54_RS10855	0.71	-2.4