Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10520

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
2,321,686	+		LRK54_RS10515	0.32	-0.2
2,321,756	-		LRK54_RS10515	0.39	+0.0
2,321,915	-		LRK54_RS10515	0.55	+1.8
2,321,915	-		LRK54_RS10515	0.55	+0.2
2,321,915	-		LRK54_RS10515	0.55	-0.6
2,321,915	-		LRK54_RS10515	0.55	-0.0
2,321,998	+		LRK54_RS10515	0.63	+0.3
2,321,998	+		LRK54_RS10515	0.63	+0.9
2,321,998	+		LRK54_RS10515	0.63	-0.7
2,321,998	+		LRK54_RS10515	0.63	-0.6
2,321,998	+		LRK54_RS10515	0.63	+0.0
2,321,998	+		LRK54_RS10515	0.63	-0.2
2,321,998	+		LRK54_RS10515	0.63	+0.4
2,321,999	-		LRK54_RS10515	0.63	-0.1
2,321,999	-		LRK54_RS10515	0.63	+0.6
2,321,999	-		LRK54_RS10515	0.63	-0.0
2,321,999	-		LRK54_RS10515	0.63	+0.4
2,321,999	-		LRK54_RS10515	0.63	+0.7
2,321,999	-		LRK54_RS10515	0.63	+0.4
2,321,999	-		LRK54_RS10515	0.63	+0.9
2,322,001	+		LRK54_RS10515	0.63	-0.2
2,322,001	+		LRK54_RS10515	0.63	+1.4
2,322,001	+		LRK54_RS10515	0.63	+1.2
2,322,001	+		LRK54_RS10515	0.63	-0.6
2,322,001	+		LRK54_RS10515	0.63	-0.3
2,322,001	+		LRK54_RS10515	0.63	-0.5
2,322,001	+		LRK54_RS10515	0.63	+2.1
2,322,002	-		LRK54_RS10515	0.63	-1.0
2,322,002	-		LRK54_RS10515	0.63	-0.8
2,322,002	-		LRK54_RS10515	0.63	+0.5
2,322,002	-		LRK54_RS10515	0.63	+0.2
2,322,002	-		LRK54_RS10515	0.63	-0.1
2,322,002	-		LRK54_RS10515	0.63	-1.3
2,322,002	-		LRK54_RS10515	0.63	+1.4
2,322,002	-		LRK54_RS10515	0.63	-0.0
2,322,002	-		LRK54_RS10515	0.63	-1.0
2,322,002	-		LRK54_RS10515	0.63	+0.2
2,322,002	-		LRK54_RS10515	0.63	+0.2
2,322,014	+		LRK54_RS10515	0.65	-1.5
2,322,061	+		LRK54_RS10515	0.69	-0.1
2,322,061	+		LRK54_RS10515	0.69	-0.4
2,322,061	+		LRK54_RS10515	0.69	-0.7
2,322,061	+		LRK54_RS10515	0.69	-0.6
2,322,061	+		LRK54_RS10515	0.69	-0.3
2,322,061	+		LRK54_RS10515	0.69	-0.4
2,322,061	+		LRK54_RS10515	0.69	-0.3
2,322,061	+		LRK54_RS10515	0.69	+0.0
2,322,061	+		LRK54_RS10515	0.69	+1.1
2,322,061	+		LRK54_RS10515	0.69	-0.7
2,322,061	+		LRK54_RS10515	0.69	-1.5
2,322,061	+		LRK54_RS10515	0.69	+0.1
2,322,061	+		LRK54_RS10515	0.69	+1.0
2,322,061	+		LRK54_RS10515	0.69	-0.6
2,322,062	-		LRK54_RS10515	0.69	+0.8
2,322,062	-		LRK54_RS10515	0.69	+0.4
2,322,062	-		LRK54_RS10515	0.69	+0.6
2,322,062	-		LRK54_RS10515	0.69	-0.3
2,322,062	-		LRK54_RS10515	0.69	+0.1
2,322,062	-		LRK54_RS10515	0.69	+0.1
2,322,062	-		LRK54_RS10515	0.69	-0.1
2,322,062	-		LRK54_RS10515	0.69	+1.0
2,322,062	-		LRK54_RS10515	0.69	+0.0
2,322,062	-		LRK54_RS10515	0.69	-0.4
2,322,062	-		LRK54_RS10515	0.69	-0.1
2,322,062	-		LRK54_RS10515	0.69	-0.4
2,322,062	-		LRK54_RS10515	0.69	+0.4
2,322,062	-		LRK54_RS10515	0.69	-0.3
2,322,062	-		LRK54_RS10515	0.69	+0.5
2,322,062	-		LRK54_RS10515	0.69	-1.1
2,322,199	+		LRK54_RS10515	0.83	+0.0
2,322,199	+		LRK54_RS10515	0.83	+0.0
2,322,199	+		LRK54_RS10515	0.83	+0.2
2,322,199	+		LRK54_RS10515	0.83	-0.2
2,322,199	+		LRK54_RS10515	0.83	+0.2
2,322,199	+		LRK54_RS10515	0.83	-0.0
2,322,199	+		LRK54_RS10515	0.83	+0.0
2,322,199	+		LRK54_RS10515	0.83	+0.6
2,322,199	+		LRK54_RS10515	0.83	-1.0
2,322,199	+		LRK54_RS10515	0.83	+0.3
2,322,199	+		LRK54_RS10515	0.83	-0.6
2,322,199	+		LRK54_RS10515	0.83	+0.1
2,322,199	+		LRK54_RS10515	0.83	+1.3
2,322,199	+		LRK54_RS10515	0.83	-0.3
2,322,199	+		LRK54_RS10515	0.83	-1.0
2,322,200	-		LRK54_RS10515	0.83	+2.2
2,322,200	-		LRK54_RS10515	0.83	-0.0
2,322,200	-		LRK54_RS10515	0.83	-1.1
2,322,200	-		LRK54_RS10515	0.83	-0.6
2,322,200	-		LRK54_RS10515	0.83	+1.3
2,322,200	-		LRK54_RS10515	0.83	-0.5
2,322,200	-		LRK54_RS10515	0.83	+1.1
2,322,200	-		LRK54_RS10515	0.83	+0.0
2,322,200	-		LRK54_RS10515	0.83	+1.2
2,322,200	-		LRK54_RS10515	0.83	-0.1
2,322,200	-		LRK54_RS10515	0.83	+0.4
2,322,200	-		LRK54_RS10515	0.83	+0.0
2,322,200	-		LRK54_RS10515	0.83	+0.2
2,322,200	-		LRK54_RS10515	0.83	+0.4
2,322,200	-		LRK54_RS10515	0.83	-0.4
2,322,286	+				+0.2
2,322,286	+				-0.3
2,322,287	-				+0.0
2,322,287	-				-0.3
2,322,380	+				+1.1
2,322,380	+				-1.0
2,322,381	-				+0.9
2,322,381	-				-0.9
2,322,381	-				+0.1
2,322,381	-				+1.2
2,322,381	-				-0.9
2,322,381	-				+0.0
2,322,422	-				-1.1
2,322,432	+				+0.5
2,322,432	+				-1.9
2,322,497	+				-1.4
2,322,497	+				-1.6
2,322,497	+				-2.0
2,322,497	+				+0.6
2,322,498	-				-0.6
2,322,498	-				+0.7
2,322,662	+		LRK54_RS10520	0.21	+0.5
2,322,662	+		LRK54_RS10520	0.21	-0.6
2,322,662	+		LRK54_RS10520	0.21	-0.4
2,322,662	+		LRK54_RS10520	0.21	+0.1
2,322,662	+		LRK54_RS10520	0.21	-0.2
2,322,662	+		LRK54_RS10520	0.21	+1.8
2,322,662	+		LRK54_RS10520	0.21	+1.1
2,322,662	+		LRK54_RS10520	0.21	+0.2
2,322,662	+		LRK54_RS10520	0.21	-1.2
2,322,662	+		LRK54_RS10520	0.21	+1.2
2,322,662	+		LRK54_RS10520	0.21	+0.3
2,322,662	+		LRK54_RS10520	0.21	+0.3
2,322,662	+		LRK54_RS10520	0.21	+0.2
2,322,662	+		LRK54_RS10520	0.21	+0.7
2,322,662	+		LRK54_RS10520	0.21	+0.5
2,322,662	+		LRK54_RS10520	0.21	-0.7
2,322,662	+		LRK54_RS10520	0.21	+1.3
2,322,662	+		LRK54_RS10520	0.21	+0.6
2,322,662	+		LRK54_RS10520	0.21	+1.1
2,322,662	+		LRK54_RS10520	0.21	+0.2
2,322,663	-		LRK54_RS10520	0.22	-0.2
2,322,663	-		LRK54_RS10520	0.22	+0.1
2,322,663	-		LRK54_RS10520	0.22	+1.3
2,322,663	-		LRK54_RS10520	0.22	+0.7
2,322,663	-		LRK54_RS10520	0.22	+0.4
2,322,663	-		LRK54_RS10520	0.22	+0.6
2,322,663	-		LRK54_RS10520	0.22	+0.8
2,322,663	-		LRK54_RS10520	0.22	+0.5
2,322,663	-		LRK54_RS10520	0.22	+0.5
2,322,663	-		LRK54_RS10520	0.22	-2.3
2,322,663	-		LRK54_RS10520	0.22	-1.0
2,322,663	-		LRK54_RS10520	0.22	-0.5
2,322,663	-		LRK54_RS10520	0.22	-0.8
2,322,663	-				+2.2
2,322,663	-		LRK54_RS10520	0.22	+0.6
2,322,663	-		LRK54_RS10520	0.22	+0.6
2,322,663	-		LRK54_RS10520	0.22	-2.0
2,322,663	-		LRK54_RS10520	0.22	-0.5
2,322,663	-		LRK54_RS10520	0.22	+0.3
2,322,663	-		LRK54_RS10520	0.22	-1.5
2,322,663	-		LRK54_RS10520	0.22	+1.2
2,322,663	-		LRK54_RS10520	0.22	-0.1
2,322,663	-		LRK54_RS10520	0.22	+0.2
2,322,663	-		LRK54_RS10520	0.22	+1.1
2,322,663	-		LRK54_RS10520	0.22	+0.6
2,322,663	-		LRK54_RS10520	0.22	-0.4
2,322,663	-		LRK54_RS10520	0.22	-0.7
2,322,663	-		LRK54_RS10520	0.22	-0.4
2,322,663	-		LRK54_RS10520	0.22	+0.4
2,322,663	-		LRK54_RS10520	0.22	-1.1
2,322,663	-		LRK54_RS10520	0.22	+0.2
2,322,663	-		LRK54_RS10520	0.22	-0.4
2,322,663	-		LRK54_RS10520	0.22	-0.2
2,322,665	+		LRK54_RS10520	0.22	+0.1
2,322,665	+		LRK54_RS10520	0.22	-0.6
2,322,665	+		LRK54_RS10520	0.22	+0.2
2,322,666	-		LRK54_RS10520	0.22	+0.9
2,322,666	-		LRK54_RS10520	0.22	+1.3
2,322,873	+		LRK54_RS10520	0.45	+0.9
2,322,874	-		LRK54_RS10520	0.45	+0.1
2,322,980	+		LRK54_RS10520	0.57	-0.6
2,322,980	+		LRK54_RS10520	0.57	+0.6
2,322,980	+		LRK54_RS10520	0.57	+0.8
2,322,980	+		LRK54_RS10520	0.57	+1.0
2,322,981	-		LRK54_RS10520	0.57	-0.6
2,322,981	-		LRK54_RS10520	0.57	-0.0
2,323,154	+		LRK54_RS10520	0.77	-2.4
2,323,154	+		LRK54_RS10520	0.77	-0.0
2,323,154	+		LRK54_RS10520	0.77	+1.0
2,323,155	-		LRK54_RS10520	0.77	-0.2
2,323,155	-		LRK54_RS10520	0.77	-0.5
2,323,155	-		LRK54_RS10520	0.77	+0.4
2,323,155	-		LRK54_RS10520	0.77	+0.2
2,323,155	-		LRK54_RS10520	0.77	+0.2
2,323,155	-		LRK54_RS10520	0.77	-0.1
2,323,155	-		LRK54_RS10520	0.77	+0.1
2,323,155	-		LRK54_RS10520	0.77	-1.8
2,323,155	-		LRK54_RS10520	0.77	+1.2
2,323,155	-		LRK54_RS10520	0.77	-0.9
2,323,361	+				+0.4
2,323,361	+				-1.1
2,323,361	+				+1.0
2,323,361	+				+0.5
2,323,362	-				-0.0
2,323,450	+				+2.2
2,323,450	+				+0.6
2,323,450	+				+0.7
2,323,450	+				-0.6
2,323,450	+				-0.3
2,323,451	-				+0.6
2,323,451	-				-1.9
2,323,451	-				-0.1
2,323,451	-				+0.8
2,323,451	-				+0.9
2,323,451	-				+0.8
2,323,451	-				-0.9
2,323,663	+		LRK54_RS10525	0.28	-0.1
2,323,664	-		LRK54_RS10525	0.29	-2.0
2,323,765	+		LRK54_RS10525	0.42	-0.8
2,323,765	+		LRK54_RS10525	0.42	-0.0
2,323,766	-		LRK54_RS10525	0.42	+3.2
2,323,766	-		LRK54_RS10525	0.42	-0.9
2,323,766	-		LRK54_RS10525	0.42	-0.5
2,323,906	+		LRK54_RS10525	0.61	+0.2
2,323,906	+		LRK54_RS10525	0.61	-0.0
2,323,906	+		LRK54_RS10525	0.61	-0.7
2,323,906	+		LRK54_RS10525	0.61	+0.6
2,323,906	+		LRK54_RS10525	0.61	-0.3
2,323,907	-		LRK54_RS10525	0.61	-0.5
2,323,907	-		LRK54_RS10525	0.61	-0.2
2,323,907	-		LRK54_RS10525	0.61	+0.6
2,323,907	-		LRK54_RS10525	0.61	+2.2
2,323,955	-		LRK54_RS10525	0.67	+0.3
2,323,987	+		LRK54_RS10525	0.71	+0.9
2,323,987	+		LRK54_RS10525	0.71	-0.7
2,323,987	+		LRK54_RS10525	0.71	+0.5
2,323,987	+		LRK54_RS10525	0.71	+0.2
2,323,987	+		LRK54_RS10525	0.71	+1.5
2,323,988	-		LRK54_RS10525	0.72	-0.2
2,323,988	-		LRK54_RS10525	0.72	+0.3
2,323,988	-		LRK54_RS10525	0.72	+0.5
2,323,988	-		LRK54_RS10525	0.72	-1.5
2,324,113	+		LRK54_RS10525	0.88	+0.6
2,324,113	+		LRK54_RS10525	0.88	+0.7
2,324,113	+		LRK54_RS10525	0.88	+0.2
2,324,113	+		LRK54_RS10525	0.88	+1.0
2,324,113	+		LRK54_RS10525	0.88	+0.1
2,324,114	-		LRK54_RS10525	0.88	+0.2
2,324,114	-		LRK54_RS10525	0.88	-1.0
2,324,114	-		LRK54_RS10525	0.88	-0.1
2,324,158	+				-1.7
2,324,158	+				-2.3
2,324,158	+				-1.2
2,324,159	-				+0.5
2,324,170	+				+0.3
2,324,170	+				-0.2
2,324,170	+				-0.6
2,324,170	+				+0.3
2,324,170	+				+0.6
2,324,170	+				+0.9
2,324,170	+				+0.1
2,324,170	+				+1.2
2,324,170	+				+0.1
2,324,171	-				-0.4
2,324,171	-				+1.6
2,324,171	-				-0.0
2,324,171	-				+0.1
2,324,171	-				+0.3
2,324,171	-				-0.2
2,324,171	-				-0.4
2,324,171	-				+1.6
2,324,171	-				-0.2
2,324,171	-				+0.2
2,324,343	-				-0.2