Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10405

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
2,292,508	+				+0.2
2,292,508	+				-0.3
2,292,508	+				-1.6
2,292,508	+				-0.6
2,292,508	+				-1.8
2,292,508	+				-0.6
2,292,508	+				-2.0
2,292,508	+				-0.1
2,292,508	+				-0.0
2,292,508	+				-1.7
2,292,508	+				-0.6
2,292,508	+				+0.1
2,292,508	+				+0.2
2,292,508	+				-0.6
2,292,509	-				+0.5
2,292,509	-				-0.4
2,292,509	-				-0.8
2,292,509	-				-0.6
2,292,509	-				-0.3
2,292,509	-				-1.2
2,292,509	-				-0.6
2,292,509	-				-0.7
2,292,509	-				-0.6
2,292,567	+				-0.2
2,292,567	+				-0.0
2,292,678	+				-0.1
2,292,678	+				-2.4
2,292,678	+				-0.0
2,292,679	-				+0.2
2,292,679	-				-0.5
2,292,679	-				-0.9
2,292,702	+				-0.5
2,292,722	+				-1.0
2,292,722	+				+0.2
2,292,723	-				+0.6
2,292,725	+				-0.6
2,292,726	-				+0.9
2,292,726	-				-1.0
2,292,726	-				+1.2
2,292,766	-				-1.1
2,292,766	-				+2.2
2,292,769	+				-0.1
2,292,769	+				-1.5
2,292,770	-				-0.0
2,292,770	-				-0.1
2,292,803	+				-2.3
2,292,804	-				-0.9
2,292,916	+				-0.1
2,292,916	+				-1.1
2,292,916	+				-0.6
2,292,916	+				-0.4
2,292,939	-				-1.6
2,292,939	-				-0.8
2,293,041	+				-2.6
2,293,041	+				+2.2
2,293,042	-				-1.2
2,293,042	-				+0.1
2,293,042	-				-0.1
2,293,042	-				+0.5
2,293,042	-				-1.0
2,293,042	-				-0.4
2,293,042	-				-0.2
2,293,108	-				+0.0
2,293,117	+				-0.6
2,293,117	+				-1.7
2,293,117	+				-1.7
2,293,117	+				-0.7
2,293,118	-				-0.8
2,293,118	-				-0.6
2,293,118	-				-0.6
2,293,118	-				+0.3
2,293,118	-				-0.4
2,293,118	-				+3.0
2,293,118	-				+3.2
2,293,118	-				+0.9
2,293,130	+				-1.6
2,293,130	+				+0.2
2,293,169	+				-1.5
2,293,169	+				-0.5
2,293,170	-				+1.8
2,293,170	-				-0.8
2,293,177	+				-1.9
2,293,178	-				-1.1
2,293,178	-				+0.6
2,293,178	-				-0.4
2,293,178	-				+2.2
2,293,184	+				-0.3
2,293,184	+				-1.1
2,293,184	+				-1.4
2,293,184	+				+1.6
2,293,185	-				-0.2
2,293,185	-				+1.2
2,293,212	+				+0.8
2,293,212	+				-0.4
2,293,225	+				+1.5
2,293,225	+				+0.5
2,293,226	-				-0.2
2,293,226	-				-1.2
2,293,226	-				+0.1
2,293,226	-				+0.6
2,293,226	-				+0.4
2,293,281	+				+0.6
2,293,281	+				-0.7
2,293,281	+				-0.4
2,293,281	+				-0.0
2,293,281	+				-0.2
2,293,281	+				-0.8
2,293,281	+				+0.6
2,293,281	+				+0.1
2,293,281	+				-0.8
2,293,282	-				+1.2
2,293,282	-				-0.2
2,293,282	-				-0.7
2,293,282	-				+0.2
2,293,282	-				-0.6
2,293,282	-				+0.6
2,293,302	-				+1.0
2,293,336	+		LRK54_RS10405	0.12	-1.2
2,293,337	-		LRK54_RS10405	0.13	+0.5
2,293,337	-		LRK54_RS10405	0.13	+0.2
2,293,356	+		LRK54_RS10405	0.19	+0.7
2,293,356	+		LRK54_RS10405	0.19	+0.1
2,293,382	+		LRK54_RS10405	0.28	-0.8
2,293,423	-		LRK54_RS10405	0.43	+1.2
2,293,451	-		LRK54_RS10405	0.52	+3.0
2,293,456	+		LRK54_RS10405	0.54	-2.1
2,293,457	-		LRK54_RS10405	0.55	-0.4
2,293,485	+		LRK54_RS10405	0.64	-0.6
2,293,486	-		LRK54_RS10405	0.65	+0.8
2,293,486	-		LRK54_RS10405	0.65	-0.6
2,293,486	-		LRK54_RS10405	0.65	-0.4
2,293,578	+				+0.6
2,293,578	+				-0.5
2,293,579	-				-0.9
2,293,579	-				-2.1
2,293,636	+				+0.6
2,293,636	+				-0.7
2,293,637	-				-0.7
2,293,675	-				-0.4
2,293,767	-				+1.4
2,293,767	-				-1.1
2,293,770	+				-0.6
2,293,770	+				-1.4
2,293,775	+				+0.3
2,293,775	+				-0.4
2,293,775	+				+0.0
2,293,776	-				-0.4
2,293,776	-				-0.8
2,293,776	-				-0.2
2,293,793	+				-0.9
2,293,794	-				-0.9
2,293,794	-				+0.3
2,293,845	+				-0.5
2,293,845	+				-1.0
2,293,845	+				+0.7
2,293,846	-		LRK54_RS10410	0.10	-0.9
2,293,888	-		LRK54_RS10410	0.16	+0.2
2,293,888	-		LRK54_RS10410	0.16	+0.6
2,293,940	+		LRK54_RS10410	0.23	+0.2
2,293,941	-		LRK54_RS10410	0.23	+0.4
2,293,941	-		LRK54_RS10410	0.23	-0.1
2,294,026	+		LRK54_RS10410	0.35	-1.2
2,294,026	+		LRK54_RS10410	0.35	-0.8
2,294,026	+		LRK54_RS10410	0.35	+0.6
2,294,026	+		LRK54_RS10410	0.35	-1.0
2,294,031	+		LRK54_RS10410	0.36	-0.9
2,294,039	+		LRK54_RS10410	0.37	-1.2
2,294,039	+		LRK54_RS10410	0.37	+0.4
2,294,135	+		LRK54_RS10410	0.50	-0.9
2,294,211	+		LRK54_RS10410	0.61	-0.7
2,294,249	+		LRK54_RS10410	0.66	-0.9
2,294,250	-		LRK54_RS10410	0.66	+0.4
2,294,250	-		LRK54_RS10410	0.66	+0.1
2,294,278	+		LRK54_RS10410	0.70	-0.8
2,294,278	+		LRK54_RS10410	0.70	-0.2
2,294,278	+		LRK54_RS10410	0.70	+0.4
2,294,348	+		LRK54_RS10410	0.80	+1.2
2,294,348	+		LRK54_RS10410	0.80	+1.6
2,294,348	+		LRK54_RS10410	0.80	-0.3
2,294,348	+		LRK54_RS10410	0.80	-0.1
2,294,348	+		LRK54_RS10410	0.80	+0.7
2,294,349	-		LRK54_RS10410	0.80	+0.6
2,294,349	-		LRK54_RS10410	0.80	+1.1
2,294,349	-		LRK54_RS10410	0.80	+0.6
2,294,349	-		LRK54_RS10410	0.80	+0.0
2,294,349	-		LRK54_RS10410	0.80	+0.5
2,294,349	-		LRK54_RS10410	0.80	+0.0
2,294,349	-		LRK54_RS10410	0.80	+0.6
2,294,349	-		LRK54_RS10410	0.80	-1.2
2,294,349	-		LRK54_RS10410	0.80	+0.4
2,294,349	-		LRK54_RS10410	0.80	-0.4
2,294,349	-		LRK54_RS10410	0.80	-0.8
2,294,382	+		LRK54_RS10410	0.84	+0.1
2,294,382	+		LRK54_RS10410	0.84	-0.1
2,294,382	+		LRK54_RS10410	0.84	-0.9
2,294,382	+		LRK54_RS10410	0.84	+0.6
2,294,382	+		LRK54_RS10410	0.84	+0.6
2,294,382	+		LRK54_RS10410	0.84	+1.0
2,294,383	-		LRK54_RS10410	0.85	+0.6
2,294,383	-		LRK54_RS10410	0.85	-0.1
2,294,383	-		LRK54_RS10410	0.85	+0.0
2,294,383	-		LRK54_RS10410	0.85	+0.5
2,294,383	-		LRK54_RS10410	0.85	+0.2
2,294,383	-		LRK54_RS10410	0.85	-1.0
2,294,383	-		LRK54_RS10410	0.85	-0.4
2,294,384	+		LRK54_RS10410	0.85	-1.1
2,294,384	+		LRK54_RS10410	0.85	+0.2
2,294,384	+		LRK54_RS10410	0.85	+2.1
2,294,384	+		LRK54_RS10410	0.85	-0.0
2,294,384	+		LRK54_RS10410	0.85	+0.0
2,294,384	+		LRK54_RS10410	0.85	-0.6
2,294,384	+		LRK54_RS10410	0.85	-1.0
2,294,384	+		LRK54_RS10410	0.85	+0.4
2,294,384	+		LRK54_RS10410	0.85	-0.9
2,294,385	-		LRK54_RS10410	0.85	-0.1
2,294,385	-		LRK54_RS10410	0.85	-0.3
2,294,385	-		LRK54_RS10410	0.85	-1.6
2,294,385	-		LRK54_RS10410	0.85	-1.8
2,294,385	-		LRK54_RS10410	0.85	+0.8
2,294,385	-		LRK54_RS10410	0.85	-0.6
2,294,385	-		LRK54_RS10410	0.85	+0.0
2,294,385	-		LRK54_RS10410	0.85	+0.4
2,294,385	-		LRK54_RS10410	0.85	-0.7
2,294,385	-		LRK54_RS10410	0.85	+1.2
2,294,385	-		LRK54_RS10410	0.85	+1.6
2,294,385	-		LRK54_RS10410	0.85	-0.1
2,294,385	-		LRK54_RS10410	0.85	-0.9
2,294,385	-		LRK54_RS10410	0.85	-0.5
2,294,402	+		LRK54_RS10410	0.87	+0.2
2,294,403	-		LRK54_RS10410	0.87	-0.1
2,294,467	+				-0.8
2,294,467	+				+0.0
2,294,467	+				+0.2
2,294,467	+				-0.8
2,294,467	+				-0.0
2,294,467	+				-0.6
2,294,468	-				+0.1
2,294,474	-				-0.6
2,294,474	-				-0.1
2,294,474	-				-2.1
2,294,474	-				+1.2
2,294,474	-				+1.6
2,294,581	+				+1.1
2,294,581	+				+0.1
2,294,581	+				-0.5
2,294,581	+				-0.3
2,294,581	+				+0.6
2,294,581	+				-1.2
2,294,581	+				-0.9
2,294,581	+				+1.1
2,294,581	+				+0.2
2,294,581	+				+0.4
2,294,581	+				-0.2
2,294,581	+				+2.2
2,294,581	+				-1.1
2,294,581	+				+0.1
2,294,581	+				-0.3
2,294,582	-				-0.1
2,294,582	-				+0.0
2,294,582	-				-0.4
2,294,582	-				-0.5
2,294,582	-				-0.5
2,294,582	-				-0.9
2,294,582	-				-0.2
2,294,582	-				-0.8
2,294,582	-				-1.5
2,294,582	-				-1.1
2,294,582	-				-0.8
2,294,582	-				-0.3
2,294,582	-				-0.2