Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10365

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
2,283,218	+		LRK54_RS10360	0.15	-0.6
2,283,218	+		LRK54_RS10360	0.15	-1.2
2,283,218	+		LRK54_RS10360	0.15	-0.6
2,283,218	+		LRK54_RS10360	0.15	-0.4
2,283,219	-		LRK54_RS10360	0.15	+1.6
2,283,219	-		LRK54_RS10360	0.15	-0.6
2,283,219	-		LRK54_RS10360	0.15	-0.1
2,283,219	-		LRK54_RS10360	0.15	+0.0
2,283,444	-		LRK54_RS10360	0.37	-0.1
2,283,444	-		LRK54_RS10360	0.37	-0.9
2,283,647	+		LRK54_RS10360	0.58	-0.8
2,283,647	+		LRK54_RS10360	0.58	+1.7
2,283,648	-		LRK54_RS10360	0.58	-0.5
2,283,648	-		LRK54_RS10360	0.58	+0.7
2,284,177	+				-0.2
2,284,177	+				+0.7
2,284,178	-				+0.1
2,284,260	+		LRK54_RS10365	0.17	-0.3
2,284,261	-		LRK54_RS10365	0.17	-0.2
2,284,261	-		LRK54_RS10365	0.17	-0.8
2,284,261	-		LRK54_RS10365	0.17	+1.0
2,284,261	-		LRK54_RS10365	0.17	-0.9
2,284,261	-		LRK54_RS10365	0.17	+0.8
2,284,532	+		LRK54_RS10365	0.41	-1.1
2,284,532	+		LRK54_RS10365	0.41	+0.5
2,284,532	+		LRK54_RS10365	0.41	+0.4
2,284,533	-		LRK54_RS10365	0.41	+0.2
2,284,533	-		LRK54_RS10365	0.41	+0.6
2,284,534	+		LRK54_RS10365	0.41	+0.4
2,284,534	+		LRK54_RS10365	0.41	+0.2
2,284,534	+		LRK54_RS10365	0.41	-0.1
2,284,534	+		LRK54_RS10365	0.41	+0.5
2,284,534	+		LRK54_RS10365	0.41	-0.3
2,284,534	+		LRK54_RS10365	0.41	+0.1
2,284,535	-		LRK54_RS10365	0.41	+0.3
2,284,535	-		LRK54_RS10365	0.41	+1.2
2,284,715	-		LRK54_RS10365	0.57	+0.2
2,285,316	+				-0.1
2,285,316	+				-0.6
2,285,316	+				-0.3
2,285,316	+				-1.9
2,285,316	+				+0.8
2,285,316	+				+0.3
2,285,316	+				+0.2
2,285,316	+				-1.0
2,285,316	+				-0.6
2,285,317	-				-0.3
2,285,317	-				-0.2
2,285,317	-				+0.1
2,285,317	-				+0.1
2,285,317	-				+0.8
2,285,317	-				-0.3
2,285,350	+				-0.3
2,285,350	+				+0.4
2,285,350	+				-0.0
2,285,350	+				+0.0
2,285,350	+				-0.7
2,285,350	+				+0.8
2,285,350	+				-1.1
2,285,350	+				-0.5
2,285,350	+				-0.4
2,285,350	+				+0.1
2,285,350	+				-0.8
2,285,351	-				+0.8
2,285,351	-				-0.9
2,285,351	-				+0.1
2,285,351	-				+1.1
2,285,351	-				-0.4
2,285,351	-				+0.6
2,285,351	-				-0.4
2,285,351	-				-0.9
2,285,476	+				+0.1
2,285,476	+				+0.4
2,285,476	+				+0.2
2,285,476	+				+1.2
2,285,476	+				-0.5
2,285,477	-				+0.0
2,285,477	-				+0.1
2,285,477	-				-1.1
2,285,604	+				+0.0
2,285,604	+				+0.8
2,285,604	+				+0.4
2,285,604	+				-1.1
2,285,604	+				-0.9
2,285,604	+				+2.2
2,285,604	+				-0.6
2,285,604	+				+1.0
2,285,604	+				+1.6
2,285,604	+				+0.3
2,285,605	-				-0.0
2,285,605	-				+0.2
2,285,605	-				-0.2
2,285,605	-				-1.1
2,285,605	-				+0.0
2,285,605	-				-0.3
2,285,605	-				+0.7
2,285,605	-				-0.3
2,285,863	+		LRK54_RS10370	0.32	-1.3
2,285,863	+		LRK54_RS10370	0.32	-0.2
2,285,863	+		LRK54_RS10370	0.32	-1.5
2,285,863	+		LRK54_RS10370	0.32	+0.3
2,285,863	+		LRK54_RS10370	0.32	+0.3
2,285,863	+		LRK54_RS10370	0.32	-0.4
2,285,863	+		LRK54_RS10370	0.32	-0.5
2,285,864	-		LRK54_RS10370	0.32	-1.4
2,285,864	-		LRK54_RS10370	0.32	+0.6
2,285,884	+		LRK54_RS10370	0.34	-0.8
2,285,884	+		LRK54_RS10370	0.34	+1.5
2,285,884	+		LRK54_RS10370	0.34	+0.9
2,285,884	+		LRK54_RS10370	0.34	-1.2
2,285,884	+		LRK54_RS10370	0.34	+0.1
2,285,884	+		LRK54_RS10370	0.34	+0.9
2,285,884	+		LRK54_RS10370	0.34	+0.1
2,285,884	+		LRK54_RS10370	0.34	+0.0
2,285,884	+		LRK54_RS10370	0.34	+0.7
2,285,884	+		LRK54_RS10370	0.34	-1.3
2,285,884	+		LRK54_RS10370	0.34	+0.1
2,285,884	+		LRK54_RS10370	0.34	+0.2
2,285,884	+		LRK54_RS10370	0.34	-0.5
2,285,884	+		LRK54_RS10370	0.34	-1.7
2,285,884	+		LRK54_RS10370	0.34	+0.9
2,285,884	+		LRK54_RS10370	0.34	-2.2
2,285,884	+		LRK54_RS10370	0.34	-0.1
2,285,884	+		LRK54_RS10370	0.34	-0.0
2,285,885	-		LRK54_RS10370	0.34	+0.3
2,285,885	-		LRK54_RS10370	0.34	+0.3
2,285,885	-		LRK54_RS10370	0.34	-1.8
2,285,885	-		LRK54_RS10370	0.34	+0.6
2,285,885	-		LRK54_RS10370	0.34	-0.2
2,285,885	-		LRK54_RS10370	0.34	-0.2
2,285,885	-		LRK54_RS10370	0.34	+2.2
2,285,885	-		LRK54_RS10370	0.34	-0.2
2,285,885	-		LRK54_RS10370	0.34	+1.8
2,285,885	-		LRK54_RS10370	0.34	-0.9
2,285,885	-		LRK54_RS10370	0.34	-0.5
2,285,885	-		LRK54_RS10370	0.34	+0.0
2,285,885	-		LRK54_RS10370	0.34	-0.8
2,285,885	-		LRK54_RS10370	0.34	-0.8
2,285,923	+		LRK54_RS10370	0.39	-0.2
2,285,923	+		LRK54_RS10370	0.39	-0.5
2,285,923	+		LRK54_RS10370	0.39	-0.6
2,285,923	+		LRK54_RS10370	0.39	-0.4
2,285,923	+		LRK54_RS10370	0.39	+0.0
2,285,923	+		LRK54_RS10370	0.39	+0.4
2,285,923	+		LRK54_RS10370	0.39	+0.4
2,285,923	+		LRK54_RS10370	0.39	-0.4
2,285,923	+		LRK54_RS10370	0.39	+0.3
2,285,923	+		LRK54_RS10370	0.39	-0.8
2,285,923	+		LRK54_RS10370	0.39	-0.4
2,285,923	+		LRK54_RS10370	0.39	-0.1
2,285,923	+		LRK54_RS10370	0.39	-0.3
2,285,923	+		LRK54_RS10370	0.39	-0.3
2,285,923	+		LRK54_RS10370	0.39	+1.2
2,285,923	+		LRK54_RS10370	0.39	+0.2
2,285,923	+		LRK54_RS10370	0.39	-0.6
2,285,923	+		LRK54_RS10370	0.39	+0.7
2,285,923	+		LRK54_RS10370	0.39	-0.9
2,285,923	+		LRK54_RS10370	0.39	+0.4
2,285,923	+		LRK54_RS10370	0.39	-0.7
2,285,923	+		LRK54_RS10370	0.39	-0.1
2,285,923	+		LRK54_RS10370	0.39	+0.4
2,285,923	+		LRK54_RS10370	0.39	-0.5
2,285,923	+		LRK54_RS10370	0.39	-0.2
2,285,923	+		LRK54_RS10370	0.39	-0.8
2,285,923	+		LRK54_RS10370	0.39	-0.8
2,285,923	+		LRK54_RS10370	0.39	+1.3
2,285,923	+		LRK54_RS10370	0.39	+1.9
2,285,923	+		LRK54_RS10370	0.39	-1.6
2,285,923	+		LRK54_RS10370	0.39	+0.2
2,285,923	+		LRK54_RS10370	0.39	-0.2
2,285,923	+		LRK54_RS10370	0.39	-1.2
2,285,923	+		LRK54_RS10370	0.39	-0.1
2,285,923	+		LRK54_RS10370	0.39	+0.6
2,285,923	+		LRK54_RS10370	0.39	+0.4
2,285,924	-		LRK54_RS10370	0.40	+0.1
2,285,924	-		LRK54_RS10370	0.40	-0.2
2,285,924	-		LRK54_RS10370	0.40	+0.8
2,285,924	-		LRK54_RS10370	0.40	+1.6
2,285,924	-		LRK54_RS10370	0.40	+0.0
2,285,924	-		LRK54_RS10370	0.40	+0.0
2,285,924	-		LRK54_RS10370	0.40	+1.1
2,285,924	-		LRK54_RS10370	0.40	-0.4
2,285,924	-		LRK54_RS10370	0.40	+0.4
2,285,924	-		LRK54_RS10370	0.40	-0.3
2,285,924	-		LRK54_RS10370	0.40	-1.4
2,285,924	-		LRK54_RS10370	0.40	-0.3
2,285,924	-		LRK54_RS10370	0.40	-0.1
2,285,924	-		LRK54_RS10370	0.40	+1.2
2,285,924	-		LRK54_RS10370	0.40	-0.4
2,285,924	-		LRK54_RS10370	0.40	+0.3
2,285,924	-		LRK54_RS10370	0.40	-1.0
2,285,924	-		LRK54_RS10370	0.40	+1.0
2,285,924	-		LRK54_RS10370	0.40	-0.6
2,285,924	-		LRK54_RS10370	0.40	+0.9
2,285,924	-		LRK54_RS10370	0.40	+0.3
2,285,924	-		LRK54_RS10370	0.40	-0.4
2,285,924	-		LRK54_RS10370	0.40	+0.1
2,285,924	-		LRK54_RS10370	0.40	-1.1
2,285,924	-		LRK54_RS10370	0.40	-0.4
2,285,924	-		LRK54_RS10370	0.40	+0.3
2,285,924	-		LRK54_RS10370	0.40	-0.7
2,285,924	-		LRK54_RS10370	0.40	-0.7
2,285,924	-		LRK54_RS10370	0.40	-0.2
2,285,924	-		LRK54_RS10370	0.40	-0.1
2,285,950	+		LRK54_RS10370	0.43	+0.1
2,285,950	+		LRK54_RS10370	0.43	+0.2
2,285,950	+		LRK54_RS10370	0.43	-1.8
2,285,950	+		LRK54_RS10370	0.43	-0.1
2,285,950	+		LRK54_RS10370	0.43	+1.1
2,285,950	+		LRK54_RS10370	0.43	+0.8
2,285,951	-		LRK54_RS10370	0.43	+1.6
2,285,951	-		LRK54_RS10370	0.43	+0.5
2,285,971	+		LRK54_RS10370	0.46	-1.1
2,285,972	-		LRK54_RS10370	0.46	-0.9
2,285,972	-		LRK54_RS10370	0.46	+2.2
2,285,972	-		LRK54_RS10370	0.46	-0.9
2,285,972	-		LRK54_RS10370	0.46	+0.9
2,285,996	-		LRK54_RS10370	0.49	-1.1
2,286,083	+		LRK54_RS10370	0.60	+0.4
2,286,084	-		LRK54_RS10370	0.60	-0.5
2,286,084	-		LRK54_RS10370	0.60	-1.0
2,286,084	-		LRK54_RS10370	0.60	-0.1
2,286,084	-		LRK54_RS10370	0.60	+0.2
2,286,160	+		LRK54_RS10370	0.70	-0.2
2,286,160	+		LRK54_RS10370	0.70	+0.4
2,286,160	+		LRK54_RS10370	0.70	+0.5
2,286,160	+		LRK54_RS10370	0.70	-1.2
2,286,160	+		LRK54_RS10370	0.70	-1.4
2,286,160	+		LRK54_RS10370	0.70	+0.4
2,286,160	+		LRK54_RS10370	0.70	-0.4
2,286,160	+		LRK54_RS10370	0.70	+0.2
2,286,161	-		LRK54_RS10370	0.70	-0.4
2,286,161	-		LRK54_RS10370	0.70	-0.1
2,286,161	-		LRK54_RS10370	0.70	-0.5
2,286,161	-		LRK54_RS10370	0.70	-1.0
2,286,161	-		LRK54_RS10370	0.70	-0.2
2,286,166	+		LRK54_RS10370	0.71	-1.7
2,286,166	+		LRK54_RS10370	0.71	-1.4
2,286,166	+		LRK54_RS10370	0.71	+0.8
2,286,166	+		LRK54_RS10370	0.71	+0.4
2,286,166	+		LRK54_RS10370	0.71	-1.1
2,286,166	+		LRK54_RS10370	0.71	+0.1
2,286,166	+		LRK54_RS10370	0.71	+0.7
2,286,166	+		LRK54_RS10370	0.71	-0.6
2,286,166	+		LRK54_RS10370	0.71	+0.6
2,286,167	-		LRK54_RS10370	0.71	+0.0
2,286,167	-		LRK54_RS10370	0.71	-1.3
2,286,167	-		LRK54_RS10370	0.71	-0.5
2,286,167	-		LRK54_RS10370	0.71	+0.1