Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09615

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
2,107,470	+		LRK54_RS09605	0.30	+0.3
2,107,470	+		LRK54_RS09605	0.30	-0.3
2,107,470	+		LRK54_RS09605	0.30	-0.9
2,107,470	+		LRK54_RS09605	0.30	-1.4
2,107,470	+		LRK54_RS09605	0.30	-1.1
2,107,471	-		LRK54_RS09605	0.30	+0.3
2,107,471	-		LRK54_RS09605	0.30	-0.4
2,107,471	-		LRK54_RS09605	0.30	-0.0
2,107,471	-		LRK54_RS09605	0.30	-0.0
2,107,471	-		LRK54_RS09605	0.30	-0.7
2,107,471	-		LRK54_RS09605	0.30	+0.4
2,107,511	+		LRK54_RS09605	0.34	-0.7
2,107,511	+		LRK54_RS09605	0.34	+0.6
2,107,512	-		LRK54_RS09605	0.34	-0.4
2,107,643	+		LRK54_RS09605	0.49	-0.1
2,107,643	+		LRK54_RS09605	0.49	-0.3
2,107,643	+		LRK54_RS09605	0.49	-0.6
2,107,643	+		LRK54_RS09605	0.49	-1.9
2,107,643	+		LRK54_RS09605	0.49	+1.1
2,107,643	+		LRK54_RS09605	0.49	-0.4
2,107,643	+		LRK54_RS09605	0.49	-0.9
2,107,643	+		LRK54_RS09605	0.49	-0.0
2,107,644	-		LRK54_RS09605	0.49	+0.1
2,107,644	-		LRK54_RS09605	0.49	-0.4
2,107,644	-		LRK54_RS09605	0.49	-0.7
2,107,644	-		LRK54_RS09605	0.49	+0.6
2,107,644	-		LRK54_RS09605	0.49	+0.4
2,107,644	-		LRK54_RS09605	0.49	+1.2
2,107,644	-		LRK54_RS09605	0.49	-0.7
2,107,644	-		LRK54_RS09605	0.49	+0.1
2,107,644	-		LRK54_RS09605	0.49	+1.1
2,107,646	+		LRK54_RS09605	0.49	-2.1
2,107,646	+		LRK54_RS09605	0.49	+0.6
2,107,646	+		LRK54_RS09605	0.49	-2.4
2,107,646	+		LRK54_RS09605	0.49	-1.0
2,107,646	+		LRK54_RS09605	0.49	-2.3
2,107,646	+		LRK54_RS09605	0.49	+0.0
2,107,646	+		LRK54_RS09605	0.49	-1.8
2,107,646	+		LRK54_RS09605	0.49	-1.0
2,107,646	+		LRK54_RS09605	0.49	-0.1
2,107,646	+		LRK54_RS09605	0.49	+0.2
2,107,646	+		LRK54_RS09605	0.49	+0.5
2,107,647	-		LRK54_RS09605	0.49	+0.5
2,107,647	-		LRK54_RS09605	0.49	-0.7
2,107,647	-		LRK54_RS09605	0.49	+0.3
2,107,647	-		LRK54_RS09605	0.49	-1.1
2,107,647	-		LRK54_RS09605	0.49	-0.2
2,107,731	+		LRK54_RS09605	0.58	+0.4
2,107,731	+		LRK54_RS09605	0.58	-0.6
2,107,731	+		LRK54_RS09605	0.58	+0.1
2,107,731	+		LRK54_RS09605	0.58	-0.0
2,107,731	+		LRK54_RS09605	0.58	-0.5
2,107,731	+		LRK54_RS09605	0.58	-0.2
2,107,731	+		LRK54_RS09605	0.58	+0.7
2,107,732	-		LRK54_RS09605	0.58	+0.1
2,107,732	-		LRK54_RS09605	0.58	-0.9
2,107,732	-		LRK54_RS09605	0.58	-0.0
2,107,732	-		LRK54_RS09605	0.58	-0.1
2,107,770	+		LRK54_RS09605	0.62	-0.5
2,107,770	+		LRK54_RS09605	0.62	-0.8
2,107,770	+		LRK54_RS09605	0.62	-1.2
2,107,770	+		LRK54_RS09605	0.62	+0.1
2,107,770	+		LRK54_RS09605	0.62	+0.1
2,107,770	+		LRK54_RS09605	0.62	+0.0
2,107,770	+		LRK54_RS09605	0.62	+0.4
2,107,770	+		LRK54_RS09605	0.62	-1.1
2,107,770	+		LRK54_RS09605	0.62	+0.7
2,107,770	+		LRK54_RS09605	0.62	+0.1
2,107,771	-		LRK54_RS09605	0.62	+0.1
2,107,771	-		LRK54_RS09605	0.62	+0.4
2,107,771	-		LRK54_RS09605	0.62	+0.1
2,107,771	-		LRK54_RS09605	0.62	-0.4
2,107,771	-		LRK54_RS09605	0.62	-0.9
2,107,771	-		LRK54_RS09605	0.62	-0.1
2,107,771	-		LRK54_RS09605	0.62	+0.8
2,107,771	-		LRK54_RS09605	0.62	-0.9
2,107,771	-		LRK54_RS09605	0.62	+1.4
2,107,771	-		LRK54_RS09605	0.62	-0.5
2,107,772	-		LRK54_RS09605	0.63	-1.3
2,107,798	-		LRK54_RS09605	0.65	+1.7
2,107,870	+		LRK54_RS09605	0.73	+0.1
2,107,870	+		LRK54_RS09605	0.73	+0.0
2,107,870	+		LRK54_RS09605	0.73	-0.5
2,107,870	+		LRK54_RS09605	0.73	-0.3
2,107,870	+		LRK54_RS09605	0.73	+0.1
2,107,871	-		LRK54_RS09605	0.73	-0.8
2,107,871	-		LRK54_RS09605	0.73	+0.0
2,108,010	+		LRK54_RS09605	0.88	-0.5
2,108,010	+		LRK54_RS09605	0.88	-0.3
2,108,010	+		LRK54_RS09605	0.88	-0.0
2,108,010	+		LRK54_RS09605	0.88	-0.5
2,108,010	+		LRK54_RS09605	0.88	-1.2
2,108,010	+		LRK54_RS09605	0.88	-0.0
2,108,010	+		LRK54_RS09605	0.88	-0.0
2,108,010	+		LRK54_RS09605	0.88	-0.0
2,108,010	+		LRK54_RS09605	0.88	+0.2
2,108,010	+		LRK54_RS09605	0.88	+0.1
2,108,010	+		LRK54_RS09605	0.88	+0.2
2,108,010	+		LRK54_RS09605	0.88	-1.5
2,108,010	+		LRK54_RS09605	0.88	-0.7
2,108,010	+		LRK54_RS09605	0.88	-0.1
2,108,010	+		LRK54_RS09605	0.88	-0.2
2,108,010	+		LRK54_RS09605	0.88	-0.7
2,108,010	+		LRK54_RS09605	0.88	-0.1
2,108,011	-		LRK54_RS09605	0.88	+0.1
2,108,011	-		LRK54_RS09605	0.88	-1.4
2,108,011	-		LRK54_RS09605	0.88	+2.1
2,108,011	-		LRK54_RS09605	0.88	-0.7
2,108,011	-		LRK54_RS09605	0.88	-1.2
2,108,011	-		LRK54_RS09605	0.88	-0.8
2,108,011	-		LRK54_RS09605	0.88	-0.6
2,108,011	-		LRK54_RS09605	0.88	-0.0
2,108,011	-		LRK54_RS09605	0.88	-0.2
2,108,011	-		LRK54_RS09605	0.88	+0.1
2,108,011	-		LRK54_RS09605	0.88	+0.4
2,108,079	+				-1.2
2,108,079	+				-0.1
2,108,080	-				-0.9
2,108,119	+				-0.2
2,108,119	+				+0.4
2,108,119	+				-0.8
2,108,119	+				+0.7
2,108,119	+				-0.4
2,108,119	+				-0.7
2,108,119	+				+0.7
2,108,119	+				-0.7
2,108,119	+				-0.8
2,108,119	+				+0.7
2,108,120	-				-1.0
2,108,120	-				-0.8
2,108,120	-				-0.0
2,108,120	-				+0.5
2,108,120	-				-1.0
2,108,120	-				+0.1
2,108,156	+				-1.1
2,108,156	+				+0.4
2,108,156	+				+0.2
2,108,156	+				+1.7
2,108,156	+				-0.1
2,108,156	+				+0.3
2,108,156	+				-0.4
2,108,156	+				-1.0
2,108,156	+				+0.7
2,108,156	+				+1.0
2,108,156	+				+0.8
2,108,157	-				-0.3
2,108,157	-				+0.4
2,108,157	-				-0.3
2,108,157	-				-0.8
2,108,157	-				-0.3
2,108,157	-				-1.0
2,108,192	+				-0.3
2,108,192	+				-1.5
2,108,192	+				-0.7
2,108,192	+				+1.1
2,108,193	-				+0.1
2,108,193	-				-0.2
2,108,193	-				+0.0
2,108,193	-				-0.2
2,108,193	-				+0.1
2,108,193	-				+0.3
2,108,193	-				+1.0
2,108,193	-				-0.3
2,108,238	+		LRK54_RS09610	0.13	+0.5
2,108,238	+		LRK54_RS09610	0.13	-0.6
2,108,238	+		LRK54_RS09610	0.13	-0.8
2,108,238	+		LRK54_RS09610	0.13	+0.1
2,108,239	-		LRK54_RS09610	0.13	-1.5
2,108,250	+		LRK54_RS09610	0.18	-0.3
2,108,250	+		LRK54_RS09610	0.18	-0.7
2,108,250	+		LRK54_RS09610	0.18	+0.1
2,108,250	+		LRK54_RS09610	0.18	+0.7
2,108,250	+		LRK54_RS09610	0.18	-0.8
2,108,250	+		LRK54_RS09610	0.18	-1.3
2,108,250	+		LRK54_RS09610	0.18	-1.1
2,108,251	-		LRK54_RS09610	0.18	-0.9
2,108,251	-		LRK54_RS09610	0.18	-0.6
2,108,251	-		LRK54_RS09610	0.18	-1.2
2,108,251	-		LRK54_RS09610	0.18	+1.8
2,108,251	-		LRK54_RS09610	0.18	-0.8
2,108,251	-		LRK54_RS09610	0.18	-1.1
2,108,251	-		LRK54_RS09610	0.18	+0.4
2,108,251	-		LRK54_RS09610	0.18	+0.6
2,108,251	-		LRK54_RS09610	0.18	-0.5
2,108,251	-		LRK54_RS09610	0.18	-0.8
2,108,251	-		LRK54_RS09610	0.18	-2.3
2,108,251	-		LRK54_RS09610	0.18	+0.7
2,108,251	-		LRK54_RS09610	0.18	-0.2
2,108,519	+		LRK54_RS09615	0.16	+0.8
2,108,519	+		LRK54_RS09615	0.16	-1.2
2,108,520	-		LRK54_RS09615	0.16	-1.3
2,108,520	-		LRK54_RS09615	0.16	+0.3
2,108,520	-		LRK54_RS09615	0.16	+0.7
2,108,522	+		LRK54_RS09615	0.16	+0.8
2,108,522	+		LRK54_RS09615	0.16	-0.6
2,108,522	+		LRK54_RS09615	0.16	+0.9
2,108,523	-		LRK54_RS09615	0.17	-1.2
2,108,523	-		LRK54_RS09615	0.17	+0.3
2,108,523	-		LRK54_RS09615	0.17	+0.3
2,108,523	-		LRK54_RS09615	0.17	-1.5
2,108,523	-		LRK54_RS09615	0.17	-0.3
2,108,580	-		LRK54_RS09615	0.31	+0.3
2,108,908	+				+0.1
2,108,908	+				-1.6
2,109,020	+		LRK54_RS09620	0.11	+0.8
2,109,020	+		LRK54_RS09620	0.11	+0.1
2,109,020	+		LRK54_RS09620	0.11	-0.9
2,109,020	+		LRK54_RS09620	0.11	+0.1
2,109,021	-		LRK54_RS09620	0.11	+0.8
2,109,021	-		LRK54_RS09620	0.11	-0.3
2,109,052	+		LRK54_RS09620	0.14	+0.2
2,109,052	+		LRK54_RS09620	0.14	+0.5
2,109,052	+		LRK54_RS09620	0.14	+0.2
2,109,052	+		LRK54_RS09620	0.14	+0.7
2,109,053	-		LRK54_RS09620	0.14	+0.0
2,109,053	-		LRK54_RS09620	0.14	-0.3
2,109,053	-		LRK54_RS09620	0.14	+0.6
2,109,058	+		LRK54_RS09620	0.14	-1.3
2,109,058	+		LRK54_RS09620	0.14	+0.2
2,109,058	+		LRK54_RS09620	0.14	-1.4
2,109,059	-		LRK54_RS09620	0.14	-1.0
2,109,059	-		LRK54_RS09620	0.14	-1.4
2,109,203	+		LRK54_RS09620	0.25	-0.2
2,109,211	+		LRK54_RS09620	0.25	+0.1
2,109,212	-		LRK54_RS09620	0.25	+0.1
2,109,212	-		LRK54_RS09620	0.25	+0.3
2,109,212	-		LRK54_RS09620	0.25	+1.1
2,109,322	+		LRK54_RS09620	0.33	+0.1
2,109,322	+		LRK54_RS09620	0.33	-0.7
2,109,322	+		LRK54_RS09620	0.33	+0.7
2,109,322	+		LRK54_RS09620	0.33	+0.6
2,109,323	-		LRK54_RS09620	0.34	-0.7
2,109,323	-		LRK54_RS09620	0.34	-0.7
2,109,323	-		LRK54_RS09620	0.34	-0.1
2,109,323	-		LRK54_RS09620	0.34	-0.2
2,109,323	-		LRK54_RS09620	0.34	-0.6
2,109,323	-		LRK54_RS09620	0.34	-1.0
2,109,323	-		LRK54_RS09620	0.34	+1.4
2,109,538	+		LRK54_RS09620	0.49	+1.2
2,109,538	+		LRK54_RS09620	0.49	+0.6
2,109,549	+		LRK54_RS09620	0.50	-0.4
2,109,549	+		LRK54_RS09620	0.50	+0.4
2,109,549	+		LRK54_RS09620	0.50	+1.4
2,109,549	+		LRK54_RS09620	0.50	+0.7
2,109,549	+		LRK54_RS09620	0.50	+0.3
2,109,549	+		LRK54_RS09620	0.50	+0.1
2,109,550	-		LRK54_RS09620	0.50	-0.1
2,109,550	-		LRK54_RS09620	0.50	-0.6
2,109,550	-		LRK54_RS09620	0.50	-0.4
2,109,550	-		LRK54_RS09620	0.50	+0.4
2,109,550	-		LRK54_RS09620	0.50	+0.2
2,109,550	-		LRK54_RS09620	0.50	-1.1
2,109,550	-		LRK54_RS09620	0.50	-0.3
2,109,550	-		LRK54_RS09620	0.50	-0.8
2,109,550	-		LRK54_RS09620	0.50	-0.4
2,109,672	-		LRK54_RS09620	0.59	+0.5
2,109,694	+		LRK54_RS09620	0.61	+0.1
2,109,694	+		LRK54_RS09620	0.61	-1.3
2,109,694	+		LRK54_RS09620	0.61	+2.4
2,109,694	+		LRK54_RS09620	0.61	+1.0
2,109,694	+		LRK54_RS09620	0.61	+0.5
2,109,695	-		LRK54_RS09620	0.61	-0.6
2,109,695	-		LRK54_RS09620	0.61	-0.2
2,109,695	-		LRK54_RS09620	0.61	-1.2
2,109,695	-		LRK54_RS09620	0.61	-0.3